Wall clock time and date at job start Wed Apr 1 2020 03:39:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 H 1.09006 * 109.47194 * 55.00274 * 3 2 1 5 5 C 1.50700 * 109.47526 * 174.99949 * 3 2 1 6 6 H 1.07998 * 119.99966 * 119.99904 * 5 3 2 7 7 C 1.37878 * 120.00064 * 300.00576 * 5 3 2 8 8 N 1.31511 * 119.99697 * 359.97438 * 7 5 3 9 9 Si 1.86792 * 119.99856 * 179.97438 * 7 5 3 10 10 H 1.48503 * 109.47409 * 59.99923 * 9 7 5 11 11 H 1.48501 * 109.46990 * 179.97438 * 9 7 5 12 12 H 1.48492 * 109.47590 * 299.99919 * 9 7 5 13 13 N 1.46501 * 109.47135 * 295.00335 * 3 2 1 14 14 C 1.34777 * 120.00027 * 84.99801 * 13 3 2 15 15 O 1.21527 * 119.99885 * 0.02562 * 14 13 3 16 16 C 1.48071 * 119.99991 * 179.97438 * 14 13 3 17 17 C 1.39790 * 119.83936 * 359.72682 * 16 14 13 18 18 C 1.37743 * 120.27474 * 179.76292 * 17 16 14 19 19 C 1.39306 * 119.71541 * 0.50798 * 18 17 16 20 20 C 1.40533 * 120.25973 * 359.74377 * 19 18 17 21 21 C 1.38579 * 119.77614 * 0.02562 * 20 19 18 22 22 N 1.38811 * 118.76531 * 179.97438 * 20 19 18 23 23 H 0.97003 * 119.65325 * 179.97438 * 22 20 19 24 24 C 1.34387 * 120.68284 * 359.97438 * 22 20 19 25 25 O 1.21575 * 118.59283 * 179.97438 * 24 22 20 26 26 N 1.34220 * 122.81846 * 0.04986 * 24 22 20 27 27 C 1.46501 * 119.36113 * 179.97438 * 26 24 22 28 28 C 1.53006 * 109.47044 * 269.97379 * 27 26 24 29 29 C 1.35054 * 121.26910 * 359.94961 * 26 24 22 30 30 O 1.21572 * 120.85206 * 180.02562 * 29 26 24 31 31 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 32 32 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 33 33 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 34 34 H 1.08996 * 109.47853 * 120.00331 * 2 1 3 35 35 H 1.09002 * 109.47153 * 240.00359 * 2 1 3 36 36 H 0.97005 * 119.99685 * 180.02562 * 8 7 5 37 37 H 0.96998 * 120.00208 * 264.99507 * 13 3 2 38 38 H 1.08002 * 119.86103 * 359.97438 * 17 16 14 39 39 H 1.07999 * 120.13835 * 180.23133 * 18 17 16 40 40 H 1.08007 * 120.17360 * 179.97438 * 21 20 19 41 41 H 1.09003 * 109.47631 * 29.97855 * 27 26 24 42 42 H 1.09006 * 109.46929 * 149.97747 * 27 26 24 43 43 H 1.08998 * 109.46821 * 180.02562 * 28 27 26 44 44 H 1.09000 * 109.47016 * 300.00227 * 28 27 26 45 45 H 1.08998 * 109.46790 * 60.00633 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8419 5 6 3.5419 1.4443 0.1238 6 1 4.1472 1.8889 -0.6523 7 6 4.1433 0.8783 1.2279 8 7 3.4062 0.3373 2.1732 9 14 6.0050 0.8800 1.3810 10 1 6.5005 2.2800 1.3808 11 1 6.3978 0.2167 2.6502 12 1 6.5967 0.1454 0.2342 13 7 1.6524 2.0975 -1.2518 14 6 0.4351 2.6644 -1.3669 15 8 -0.3408 2.6326 -0.4321 16 6 0.0436 3.3270 -2.6319 17 6 0.9413 3.3675 -3.7027 18 6 0.5846 3.9772 -4.8852 19 6 -0.6728 4.5642 -5.0076 20 6 -1.5775 4.5311 -3.9327 21 6 -1.2151 3.9121 -2.7470 22 7 -2.8219 5.1262 -4.0884 23 1 -3.4565 5.1106 -3.3549 24 6 -3.1565 5.7235 -5.2447 25 8 -4.2566 6.2323 -5.3397 26 7 -2.3289 5.7813 -6.2998 27 6 -2.7722 6.4517 -7.5247 28 6 -3.4618 5.4378 -8.4399 29 6 -1.0951 5.2339 -6.2538 30 8 -0.3515 5.2910 -7.2138 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3634 0.5139 -0.8900 34 1 1.8934 -0.5138 0.8899 35 1 1.8933 -0.5138 -0.8900 36 1 3.8293 -0.0605 2.9501 37 1 2.2718 2.1232 -1.9978 38 1 1.9173 2.9158 -3.6035 39 1 1.2785 4.0039 -5.7123 40 1 -1.9052 3.8834 -1.9166 41 1 -3.4729 7.2471 -7.2704 42 1 -1.9101 6.8774 -8.0383 43 1 -3.7912 5.9365 -9.3514 44 1 -2.7611 4.6425 -8.6942 45 1 -4.3238 5.0122 -7.9263 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000183890297.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:39:47 Heat of formation + Delta-G solvation = -89.043248 kcal Electronic energy + Delta-G solvation = -29870.275896 eV Core-core repulsion = 25659.046295 eV Total energy + Delta-G solvation = -4211.229601 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -43.41117 -41.21828 -40.24710 -39.65867 -37.00729 -36.75654 -36.54374 -34.33275 -33.22153 -32.76935 -31.64271 -30.88450 -28.94625 -26.73777 -25.29867 -24.99201 -24.18087 -23.76822 -22.43311 -21.38047 -20.70197 -19.92016 -19.52950 -18.61913 -18.03942 -17.59719 -17.45810 -17.25612 -16.61574 -16.39471 -16.30048 -16.00869 -15.57856 -15.55691 -15.15958 -14.97804 -14.79081 -14.65066 -14.55559 -13.99077 -13.89569 -13.64946 -13.44130 -13.22895 -13.13338 -12.89214 -12.63553 -12.60726 -12.23644 -12.18357 -12.14613 -12.04372 -12.02620 -11.59416 -11.54917 -11.03743 -11.03475 -10.85281 -10.49460 -10.36474 -9.65796 -9.44670 -8.13234 -6.29937 -0.84802 -0.04098 0.78246 0.90914 1.43363 1.49046 1.49606 1.57132 1.76915 2.15280 2.31388 2.52411 2.74474 2.93211 3.17054 3.40070 3.66708 3.82246 3.99296 4.00547 4.04326 4.10043 4.17802 4.43465 4.49097 4.53858 4.56166 4.61104 4.74593 4.79484 4.88631 4.95250 5.08220 5.10579 5.14358 5.16654 5.30724 5.39581 5.46083 5.49687 5.56777 5.62812 5.82486 5.93323 6.00045 6.18670 6.19626 6.73250 6.77017 6.91884 7.34340 7.50575 8.91679 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.022239 B = 0.002335 C = 0.002195 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1258.725450 B =11986.591580 C =12755.373469 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.122 4.122 3 C 0.278 3.722 4 H 0.004 0.996 5 C -0.547 4.547 6 H 0.075 0.925 7 C 0.017 3.983 8 N -0.914 5.914 9 Si 0.966 3.034 10 H -0.272 1.272 11 H -0.290 1.290 12 H -0.264 1.264 13 N -0.692 5.692 14 C 0.537 3.463 15 O -0.573 6.573 16 C -0.060 4.060 17 C -0.113 4.113 18 C -0.011 4.011 19 C -0.188 4.188 20 C 0.195 3.805 21 C -0.105 4.105 22 N -0.632 5.632 23 H 0.446 0.554 24 C 0.707 3.293 25 O -0.564 6.564 26 N -0.557 5.557 27 C 0.100 3.900 28 C -0.160 4.160 29 C 0.568 3.432 30 O -0.506 6.506 31 H 0.027 0.973 32 H 0.044 0.956 33 H 0.045 0.955 34 H 0.072 0.928 35 H 0.043 0.957 36 H 0.264 0.736 37 H 0.405 0.595 38 H 0.162 0.838 39 H 0.170 0.830 40 H 0.155 0.845 41 H 0.105 0.895 42 H 0.107 0.893 43 H 0.099 0.901 44 H 0.052 0.948 45 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.069 8.950 -18.917 22.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.161 4.161 3 C 0.175 3.825 4 H 0.022 0.978 5 C -0.585 4.585 6 H 0.093 0.907 7 C -0.183 4.183 8 N -0.552 5.552 9 Si 0.792 3.208 10 H -0.197 1.197 11 H -0.216 1.216 12 H -0.189 1.189 13 N -0.341 5.341 14 C 0.324 3.676 15 O -0.454 6.454 16 C -0.064 4.064 17 C -0.132 4.132 18 C -0.030 4.030 19 C -0.194 4.194 20 C 0.095 3.905 21 C -0.127 4.127 22 N -0.280 5.280 23 H 0.290 0.710 24 C 0.409 3.591 25 O -0.439 6.439 26 N -0.301 5.301 27 C -0.020 4.020 28 C -0.218 4.218 29 C 0.360 3.640 30 O -0.380 6.380 31 H 0.047 0.953 32 H 0.063 0.937 33 H 0.064 0.936 34 H 0.090 0.910 35 H 0.061 0.939 36 H 0.073 0.927 37 H 0.242 0.758 38 H 0.179 0.821 39 H 0.187 0.813 40 H 0.172 0.828 41 H 0.123 0.877 42 H 0.125 0.875 43 H 0.118 0.882 44 H 0.072 0.928 45 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -9.766 9.196 -18.819 23.110 hybrid contribution 0.765 -0.216 0.835 1.153 sum -9.001 8.980 -17.984 22.024 Atomic orbital electron populations 1.21693 0.96932 0.99215 1.00371 1.21801 0.93795 0.99062 1.01487 1.18434 0.93733 0.89244 0.81101 0.97834 1.21542 0.91358 1.38920 1.06723 0.90723 1.25713 1.02974 0.94478 0.95144 1.70032 1.37016 1.38310 1.09821 0.85482 0.79523 0.78392 0.77449 1.19727 1.21580 1.18908 1.46215 1.15037 1.54968 1.17884 1.18630 0.82411 0.79032 0.87559 1.90750 1.52307 1.60977 1.41372 1.20063 0.94933 0.97613 0.93781 1.21520 1.00497 0.99809 0.91393 1.21107 0.93103 0.90886 0.97871 1.19693 0.97841 1.08930 0.92937 1.17687 0.84929 0.93937 0.93920 1.20658 0.97027 0.98653 0.96375 1.42686 1.15892 1.53799 1.15584 0.71038 1.15593 0.84024 0.79269 0.80187 1.91037 1.20803 1.50025 1.82058 1.46333 1.15012 1.53195 1.15567 1.21977 1.01795 0.96379 0.81857 1.22047 1.00221 0.99344 1.00217 1.18514 0.80381 0.77239 0.87870 1.90817 1.52523 1.57037 1.37619 0.95341 0.93726 0.93608 0.90986 0.93851 0.92667 0.75783 0.82101 0.81281 0.82762 0.87675 0.87496 0.88188 0.92840 0.92933 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.23 8.51 71.98 0.61 -4.62 16 2 C -0.12 -5.65 5.45 30.59 0.17 -5.48 16 3 C 0.28 13.19 2.24 44.24 0.10 13.29 16 4 H 0.00 0.21 7.58 -2.38 -0.02 0.20 16 5 C -0.55 -27.04 8.73 25.60 0.22 -26.81 16 6 H 0.07 3.40 7.74 -2.91 -0.02 3.38 16 7 C 0.02 0.89 5.29 84.66 0.45 1.33 16 8 N -0.91 -50.15 11.29 21.45 0.24 -49.91 16 9 Si 0.97 40.22 29.54 68.60 2.03 42.25 16 10 H -0.27 -11.07 7.11 99.48 0.71 -10.36 16 11 H -0.29 -12.18 7.11 99.48 0.71 -11.47 16 12 H -0.26 -10.45 7.11 99.48 0.71 -9.75 16 13 N -0.69 -25.37 4.97 -448.75 -2.23 -27.60 16 14 C 0.54 18.75 6.34 86.85 0.55 19.30 16 15 O -0.57 -24.28 13.46 -3.80 -0.05 -24.33 16 16 C -0.06 -1.49 5.88 -20.04 -0.12 -1.61 16 17 C -0.11 -2.15 9.52 22.53 0.21 -1.94 16 18 C -0.01 -0.19 9.65 22.41 0.22 0.03 16 19 C -0.19 -3.67 5.89 -19.98 -0.12 -3.78 16 20 C 0.20 3.73 6.66 38.68 0.26 3.98 16 21 C -0.11 -2.30 9.48 22.60 0.21 -2.09 16 22 N -0.63 -10.87 5.35 -317.93 -1.70 -12.57 16 23 H 0.45 5.86 8.79 -92.71 -0.81 5.04 16 24 C 0.71 14.42 8.33 179.35 1.49 15.92 16 25 O -0.56 -13.75 16.49 -3.95 -0.07 -13.82 16 26 N -0.56 -10.74 2.55 -776.64 -1.98 -12.73 16 27 C 0.10 1.52 5.76 86.38 0.50 2.02 16 28 C -0.16 -2.16 10.24 71.98 0.74 -1.42 16 29 C 0.57 11.82 7.65 86.68 0.66 12.48 16 30 O -0.51 -12.04 16.17 -3.94 -0.06 -12.10 16 31 H 0.03 1.29 7.84 -2.39 -0.02 1.27 16 32 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 33 H 0.04 1.82 5.65 -2.38 -0.01 1.81 16 34 H 0.07 3.77 5.95 -2.39 -0.01 3.76 16 35 H 0.04 1.87 8.14 -2.39 -0.02 1.85 16 36 H 0.26 13.88 8.31 -92.70 -0.77 13.11 16 37 H 0.41 12.07 6.54 -92.71 -0.61 11.46 16 38 H 0.16 2.49 6.36 -2.91 -0.02 2.47 16 39 H 0.17 2.31 7.79 -2.91 -0.02 2.29 16 40 H 0.15 3.32 7.63 -2.91 -0.02 3.29 16 41 H 0.10 1.52 7.30 -2.39 -0.02 1.50 16 42 H 0.11 1.48 7.41 -2.38 -0.02 1.47 16 43 H 0.10 0.88 8.14 -2.39 -0.02 0.86 16 44 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 45 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 Total: -1.00 -66.77 372.36 1.98 -64.79 By element: Atomic # 1 Polarization: 25.74 SS G_CDS: -0.35 Total: 25.38 kcal Atomic # 6 Polarization: 14.46 SS G_CDS: 6.16 Total: 20.62 kcal Atomic # 7 Polarization: -97.13 SS G_CDS: -5.67 Total: -102.80 kcal Atomic # 8 Polarization: -50.06 SS G_CDS: -0.18 Total: -50.24 kcal Atomic # 14 Polarization: 40.22 SS G_CDS: 2.03 Total: 42.25 kcal Total: -66.77 1.98 -64.79 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183890297.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.250 kcal (2) G-P(sol) polarization free energy of solvation -66.774 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.024 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.980 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.794 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.043 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds