Wall clock time and date at job start Wed Apr 1 2020 03:40:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53002 * 109.47326 * 2 1 4 4 H 1.09000 * 109.46822 * 305.00769 * 3 2 1 5 5 C 1.50696 * 109.46925 * 185.00185 * 3 2 1 6 6 H 1.08003 * 119.99950 * 239.99530 * 5 3 2 7 7 C 1.37879 * 119.99885 * 60.00627 * 5 3 2 8 8 N 1.31507 * 120.00175 * 359.97438 * 7 5 3 9 9 Si 1.86804 * 119.99513 * 179.97438 * 7 5 3 10 10 H 1.48498 * 109.47161 * 90.00056 * 9 7 5 11 11 H 1.48500 * 109.46839 * 209.99312 * 9 7 5 12 12 H 1.48497 * 109.47198 * 329.99722 * 9 7 5 13 13 N 1.46504 * 109.46847 * 65.00232 * 3 2 1 14 14 C 1.34773 * 120.00023 * 275.00025 * 13 3 2 15 15 O 1.21556 * 120.00322 * 0.02562 * 14 13 3 16 16 C 1.47847 * 119.99927 * 179.97438 * 14 13 3 17 17 C 1.39580 * 120.14253 * 179.97438 * 16 14 13 18 18 C 1.37956 * 119.84928 * 180.02562 * 17 16 14 19 19 C 1.38356 * 120.14868 * 0.02562 * 18 17 16 20 20 C 1.50699 * 119.85677 * 179.97438 * 19 18 17 21 21 N 1.46504 * 109.47189 * 89.99711 * 20 19 18 22 22 C 1.34771 * 124.17359 * 90.00026 * 21 20 19 23 23 O 1.21225 * 127.16028 * 0.06992 * 22 21 20 24 24 C 1.51585 * 105.68254 * 180.02562 * 22 21 20 25 25 N 1.47317 * 103.59313 * 359.97438 * 24 22 21 26 26 C 1.33785 * 124.17976 * 270.30916 * 21 20 19 27 27 O 1.21542 * 123.77022 * 359.97438 * 26 21 20 28 28 C 1.38364 * 120.29014 * 0.26897 * 19 18 17 29 29 C 1.37957 * 120.14307 * 359.45507 * 28 19 18 30 30 H 1.09007 * 109.46508 * 299.99454 * 1 2 3 31 31 H 1.08992 * 109.47307 * 59.99668 * 1 2 3 32 32 H 1.08998 * 109.47069 * 179.97438 * 1 2 3 33 33 H 1.09005 * 109.46740 * 240.00055 * 2 1 3 34 34 H 1.09002 * 109.47325 * 120.00430 * 2 1 3 35 35 H 0.96998 * 119.99863 * 180.02562 * 8 7 5 36 36 H 0.96998 * 119.99958 * 95.00137 * 13 3 2 37 37 H 1.08000 * 120.07322 * 0.02562 * 17 16 14 38 38 H 1.08002 * 119.92467 * 179.97438 * 18 17 16 39 39 H 1.09000 * 109.47083 * 329.99892 * 20 19 18 40 40 H 1.08998 * 109.47209 * 209.99555 * 20 19 18 41 41 H 1.08998 * 110.59926 * 241.47169 * 24 22 21 42 42 H 1.09003 * 110.73128 * 118.58762 * 24 22 21 43 43 H 0.97001 * 126.68790 * 179.97438 * 25 24 22 44 44 H 1.08004 * 119.92412 * 179.70531 * 28 19 18 45 45 H 1.08002 * 120.07091 * 180.29388 * 29 28 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9815 -0.8417 5 6 3.5419 1.4442 -0.1239 6 1 4.1473 1.8888 0.6522 7 6 4.1432 0.8784 -1.2281 8 7 3.4061 0.3367 -2.1730 9 14 6.0049 0.8812 -1.3819 10 1 6.5548 -0.3503 -0.7605 11 1 6.3829 0.9223 -2.8174 12 1 6.5570 2.0736 -0.6902 13 7 1.6526 2.0974 1.2519 14 6 0.4353 2.6643 1.3671 15 8 -0.3413 2.6319 0.4325 16 6 0.0440 3.3248 2.6307 17 6 -1.2157 3.9133 2.7531 18 6 -1.5743 4.5284 3.9347 19 6 -0.6883 4.5632 4.9968 20 6 -1.0867 5.2374 6.2843 21 7 -1.7286 4.2613 7.1684 22 6 -1.0678 3.5029 8.0653 23 8 0.1243 3.5005 8.2853 24 6 -2.1255 2.6542 8.7426 25 7 -3.3769 3.0726 8.0876 26 6 -3.0423 4.0085 7.1810 27 8 -3.8443 4.5652 6.4571 28 6 0.5642 3.9870 4.8799 29 6 0.9332 3.3638 3.7057 30 1 -0.3632 0.5138 0.8901 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3633 -1.0276 -0.0005 33 1 1.8933 -0.5139 -0.8901 34 1 1.8934 -0.5139 0.8899 35 1 3.8292 -0.0616 -2.9496 36 1 2.2721 2.1231 1.9978 37 1 -1.9081 3.8872 1.9246 38 1 -2.5486 4.9846 4.0306 39 1 -1.7842 6.0471 6.0698 40 1 -0.1998 5.6415 6.7724 41 1 -2.1623 2.8676 9.8109 42 1 -1.9381 1.5942 8.5707 43 1 -4.2678 2.7355 8.2709 44 1 1.2529 4.0218 5.7111 45 1 1.9094 2.9103 3.6174 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000183893509.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:40:32 Heat of formation + Delta-G solvation = -52.700660 kcal Electronic energy + Delta-G solvation = -29700.236023 eV Core-core repulsion = 25490.582355 eV Total energy + Delta-G solvation = -4209.653668 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.70724 -39.85596 -38.94049 -38.26660 -36.46396 -35.39532 -35.00021 -32.62140 -31.81844 -31.06025 -30.54006 -28.32895 -27.47062 -26.58091 -23.53273 -23.27500 -22.76024 -22.30077 -20.92356 -20.19649 -19.33335 -18.46561 -17.95242 -17.59422 -17.07158 -16.18810 -15.95044 -15.74397 -15.62066 -15.33207 -14.92879 -14.58002 -14.56550 -14.47545 -14.44701 -14.11309 -13.71305 -13.49873 -13.07595 -12.71814 -12.61753 -12.53715 -12.05475 -11.87099 -11.51385 -11.35938 -11.25140 -11.02728 -10.97219 -10.82650 -10.66252 -10.32953 -10.20960 -10.18379 -9.94925 -9.64379 -9.11984 -9.04228 -8.97407 -8.84814 -8.51179 -7.83681 -6.13083 -4.22652 0.78914 1.22888 1.39392 1.88971 2.60708 2.70643 3.23888 3.28936 3.31144 3.33280 3.57046 4.03157 4.16202 4.29126 4.36366 4.46550 4.51050 4.61503 4.89306 4.91848 5.07351 5.13647 5.18297 5.28476 5.36633 5.42113 5.61193 5.81198 6.01468 6.29449 6.30894 6.39269 6.40289 6.46113 6.48712 6.63695 6.66296 6.86854 6.95154 7.04428 7.19838 7.35567 7.42659 7.61232 7.70636 7.72393 7.89120 8.16893 8.63540 8.76150 9.08988 9.44589 10.92300 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.017834 B = 0.002353 C = 0.002250 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1569.666922 B =11898.483572 C =12443.676283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.127 4.127 3 C 0.270 3.730 4 H 0.051 0.949 5 C -0.535 4.535 6 H 0.061 0.939 7 C 0.067 3.933 8 N -0.882 5.882 9 Si 0.901 3.099 10 H -0.279 1.279 11 H -0.285 1.285 12 H -0.274 1.274 13 N -0.700 5.700 14 C 0.539 3.461 15 O -0.543 6.543 16 C -0.107 4.107 17 C -0.070 4.070 18 C -0.101 4.101 19 C -0.114 4.114 20 C 0.162 3.838 21 N -0.572 5.572 22 C 0.520 3.480 23 O -0.464 6.464 24 C 0.062 3.938 25 N -0.730 5.730 26 C 0.701 3.299 27 O -0.538 6.538 28 C -0.104 4.104 29 C -0.094 4.094 30 H 0.038 0.962 31 H 0.050 0.950 32 H 0.023 0.977 33 H 0.100 0.900 34 H 0.031 0.969 35 H 0.265 0.735 36 H 0.388 0.612 37 H 0.137 0.863 38 H 0.131 0.869 39 H 0.106 0.894 40 H 0.105 0.895 41 H 0.124 0.876 42 H 0.124 0.876 43 H 0.441 0.559 44 H 0.129 0.871 45 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.041 6.036 24.140 27.223 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.166 4.166 3 C 0.168 3.832 4 H 0.069 0.931 5 C -0.573 4.573 6 H 0.079 0.921 7 C -0.136 4.136 8 N -0.519 5.519 9 Si 0.729 3.271 10 H -0.205 1.205 11 H -0.211 1.211 12 H -0.198 1.198 13 N -0.348 5.348 14 C 0.324 3.676 15 O -0.422 6.422 16 C -0.110 4.110 17 C -0.089 4.089 18 C -0.119 4.119 19 C -0.115 4.115 20 C 0.042 3.958 21 N -0.318 5.318 22 C 0.307 3.693 23 O -0.334 6.334 24 C -0.066 4.066 25 N -0.396 5.396 26 C 0.402 3.598 27 O -0.411 6.411 28 C -0.122 4.122 29 C -0.113 4.113 30 H 0.057 0.943 31 H 0.069 0.931 32 H 0.042 0.958 33 H 0.118 0.882 34 H 0.050 0.950 35 H 0.075 0.925 36 H 0.221 0.779 37 H 0.155 0.845 38 H 0.149 0.851 39 H 0.125 0.875 40 H 0.123 0.877 41 H 0.141 0.859 42 H 0.142 0.858 43 H 0.286 0.714 44 H 0.147 0.853 45 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -11.247 6.277 22.931 26.301 hybrid contribution 0.966 -0.341 0.353 1.084 sum -10.281 5.936 23.284 26.136 Atomic orbital electron populations 1.21846 0.98348 0.98073 1.01252 1.21940 0.92623 0.99720 1.02325 1.18832 0.94294 0.89220 0.80828 0.93139 1.21220 0.90629 1.39124 1.06353 0.92084 1.24881 0.98630 0.94783 0.95340 1.69890 1.35145 1.37511 1.09359 0.86453 0.84841 0.78452 0.77402 1.20540 1.21054 1.19839 1.46476 1.14332 1.55335 1.18618 1.18178 0.83078 0.79483 0.86853 1.90742 1.51497 1.60062 1.39948 1.20480 0.95390 1.00133 0.95037 1.21312 0.95376 0.94608 0.97624 1.21106 0.99341 0.99059 0.92432 1.20048 0.95067 1.01181 0.95205 1.20575 0.99044 0.89196 0.86994 1.46481 1.08733 1.39496 1.37133 1.20914 0.88988 0.80074 0.79293 1.90836 1.13309 1.65197 1.64009 1.22483 0.82611 1.01571 0.99948 1.45432 1.10328 1.43054 1.40739 1.15888 0.82128 0.80640 0.81169 1.91029 1.51797 1.54225 1.44016 1.21027 0.95862 0.97513 0.97827 1.21394 0.99357 0.98029 0.92487 0.94335 0.93089 0.95819 0.88196 0.95028 0.92531 0.77902 0.84492 0.85076 0.87537 0.87677 0.85866 0.85796 0.71413 0.85300 0.85149 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.13 8.51 37.16 0.32 -2.82 16 2 C -0.13 -3.12 5.45 -26.73 -0.15 -3.26 16 3 C 0.27 6.82 2.24 -69.08 -0.15 6.66 16 4 H 0.05 1.48 7.58 -51.93 -0.39 1.08 16 5 C -0.53 -14.10 8.73 -34.44 -0.30 -14.40 16 6 H 0.06 1.54 7.74 -52.48 -0.41 1.13 16 7 C 0.07 1.79 5.29 -17.82 -0.09 1.70 16 8 N -0.88 -24.68 11.29 55.43 0.63 -24.05 16 9 Si 0.90 20.58 29.54 -169.99 -5.02 15.56 16 10 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 11 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 12 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 13 N -0.70 -14.75 4.97 -55.88 -0.28 -15.03 16 14 C 0.54 11.08 6.34 -12.33 -0.08 11.01 16 15 O -0.54 -12.90 13.48 5.32 0.07 -12.83 16 16 C -0.11 -1.76 5.87 -104.97 -0.62 -2.38 16 17 C -0.07 -1.06 9.60 -39.18 -0.38 -1.43 16 18 C -0.10 -1.26 9.68 -39.64 -0.38 -1.65 16 19 C -0.11 -1.27 5.47 -104.53 -0.57 -1.84 16 20 C 0.16 1.40 5.82 -5.19 -0.03 1.37 16 21 N -0.57 -4.88 2.59 -122.02 -0.32 -5.19 16 22 C 0.52 3.99 8.32 -10.55 -0.09 3.90 16 23 O -0.46 -4.82 17.76 5.60 0.10 -4.72 16 24 C 0.06 0.21 7.97 -4.31 -0.03 0.18 16 25 N -0.73 -3.59 6.58 -65.73 -0.43 -4.02 16 26 C 0.70 6.32 8.62 -88.02 -0.76 5.56 16 27 O -0.54 -6.69 17.49 5.33 0.09 -6.59 16 28 C -0.10 -1.22 9.68 -39.64 -0.38 -1.60 16 29 C -0.09 -1.29 9.54 -39.19 -0.37 -1.67 16 30 H 0.04 0.86 5.64 -51.92 -0.29 0.56 16 31 H 0.05 1.23 7.84 -51.93 -0.41 0.82 16 32 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.10 2.69 5.95 -51.93 -0.31 2.38 16 34 H 0.03 0.74 8.14 -51.93 -0.42 0.31 16 35 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 36 H 0.39 7.12 6.57 -40.82 -0.27 6.85 16 37 H 0.14 2.12 7.65 -52.49 -0.40 1.72 16 38 H 0.13 1.52 8.06 -52.49 -0.42 1.09 16 39 H 0.11 0.84 7.81 -51.93 -0.41 0.43 16 40 H 0.11 0.76 7.94 -51.93 -0.41 0.35 16 41 H 0.12 0.10 8.14 -51.93 -0.42 -0.33 16 42 H 0.12 0.24 8.14 -51.93 -0.42 -0.18 16 43 H 0.44 1.17 8.96 -40.82 -0.37 0.80 16 44 H 0.13 1.33 8.06 -52.48 -0.42 0.91 16 45 H 0.13 1.64 6.41 -52.49 -0.34 1.31 16 LS Contribution 379.24 15.07 5.72 5.72 Total: -1.00 -34.45 379.24 -9.19 -43.64 By element: Atomic # 1 Polarization: 13.89 SS G_CDS: -5.67 Total: 8.22 kcal Atomic # 6 Polarization: 3.39 SS G_CDS: -4.07 Total: -0.69 kcal Atomic # 7 Polarization: -47.90 SS G_CDS: -0.40 Total: -48.30 kcal Atomic # 8 Polarization: -24.41 SS G_CDS: 0.26 Total: -24.14 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -5.02 Total: 15.56 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -34.45 -9.19 -43.64 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183893509.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.065 kcal (2) G-P(sol) polarization free energy of solvation -34.449 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.514 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.186 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.635 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.701 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds