Wall clock time and date at job start Wed Apr 1 2020 03:40:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53002 * 109.47326 * 2 1 4 4 H 1.09000 * 109.46822 * 305.00769 * 3 2 1 5 5 C 1.50696 * 109.46925 * 185.00185 * 3 2 1 6 6 H 1.08003 * 119.99950 * 239.99530 * 5 3 2 7 7 C 1.37879 * 119.99885 * 60.00627 * 5 3 2 8 8 N 1.31507 * 120.00175 * 359.97438 * 7 5 3 9 9 Si 1.86804 * 119.99513 * 179.97438 * 7 5 3 10 10 H 1.48498 * 109.47161 * 90.00056 * 9 7 5 11 11 H 1.48500 * 109.46839 * 209.99312 * 9 7 5 12 12 H 1.48497 * 109.47198 * 329.99722 * 9 7 5 13 13 N 1.46504 * 109.46847 * 65.00232 * 3 2 1 14 14 C 1.34773 * 120.00023 * 275.00025 * 13 3 2 15 15 O 1.21556 * 120.00322 * 0.02562 * 14 13 3 16 16 C 1.47847 * 119.99927 * 179.97438 * 14 13 3 17 17 C 1.39580 * 120.14253 * 179.97438 * 16 14 13 18 18 C 1.37956 * 119.84928 * 180.02562 * 17 16 14 19 19 C 1.38356 * 120.14868 * 0.02562 * 18 17 16 20 20 C 1.50699 * 119.85677 * 179.97438 * 19 18 17 21 21 N 1.46504 * 109.47189 * 89.99711 * 20 19 18 22 22 C 1.34771 * 124.17359 * 90.00026 * 21 20 19 23 23 O 1.21225 * 127.16028 * 0.06992 * 22 21 20 24 24 C 1.51585 * 105.68254 * 180.02562 * 22 21 20 25 25 N 1.47317 * 103.59313 * 359.97438 * 24 22 21 26 26 C 1.33785 * 124.17976 * 270.30916 * 21 20 19 27 27 O 1.21542 * 123.77022 * 359.97438 * 26 21 20 28 28 C 1.38364 * 120.29014 * 0.26897 * 19 18 17 29 29 C 1.37957 * 120.14307 * 359.45507 * 28 19 18 30 30 H 1.09007 * 109.46508 * 299.99454 * 1 2 3 31 31 H 1.08992 * 109.47307 * 59.99668 * 1 2 3 32 32 H 1.08998 * 109.47069 * 179.97438 * 1 2 3 33 33 H 1.09005 * 109.46740 * 240.00055 * 2 1 3 34 34 H 1.09002 * 109.47325 * 120.00430 * 2 1 3 35 35 H 0.96998 * 119.99863 * 180.02562 * 8 7 5 36 36 H 0.96998 * 119.99958 * 95.00137 * 13 3 2 37 37 H 1.08000 * 120.07322 * 0.02562 * 17 16 14 38 38 H 1.08002 * 119.92467 * 179.97438 * 18 17 16 39 39 H 1.09000 * 109.47083 * 329.99892 * 20 19 18 40 40 H 1.08998 * 109.47209 * 209.99555 * 20 19 18 41 41 H 1.08998 * 110.59926 * 241.47169 * 24 22 21 42 42 H 1.09003 * 110.73128 * 118.58762 * 24 22 21 43 43 H 0.97001 * 126.68790 * 179.97438 * 25 24 22 44 44 H 1.08004 * 119.92412 * 179.70531 * 28 19 18 45 45 H 1.08002 * 120.07091 * 180.29388 * 29 28 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9815 -0.8417 5 6 3.5419 1.4442 -0.1239 6 1 4.1473 1.8888 0.6522 7 6 4.1432 0.8784 -1.2281 8 7 3.4061 0.3367 -2.1730 9 14 6.0049 0.8812 -1.3819 10 1 6.5548 -0.3503 -0.7605 11 1 6.3829 0.9223 -2.8174 12 1 6.5570 2.0736 -0.6902 13 7 1.6526 2.0974 1.2519 14 6 0.4353 2.6643 1.3671 15 8 -0.3413 2.6319 0.4325 16 6 0.0440 3.3248 2.6307 17 6 -1.2157 3.9133 2.7531 18 6 -1.5743 4.5284 3.9347 19 6 -0.6883 4.5632 4.9968 20 6 -1.0867 5.2374 6.2843 21 7 -1.7286 4.2613 7.1684 22 6 -1.0678 3.5029 8.0653 23 8 0.1243 3.5005 8.2853 24 6 -2.1255 2.6542 8.7426 25 7 -3.3769 3.0726 8.0876 26 6 -3.0423 4.0085 7.1810 27 8 -3.8443 4.5652 6.4571 28 6 0.5642 3.9870 4.8799 29 6 0.9332 3.3638 3.7057 30 1 -0.3632 0.5138 0.8901 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3633 -1.0276 -0.0005 33 1 1.8933 -0.5139 -0.8901 34 1 1.8934 -0.5139 0.8899 35 1 3.8292 -0.0616 -2.9496 36 1 2.2721 2.1231 1.9978 37 1 -1.9081 3.8872 1.9246 38 1 -2.5486 4.9846 4.0306 39 1 -1.7842 6.0471 6.0698 40 1 -0.1998 5.6415 6.7724 41 1 -2.1623 2.8676 9.8109 42 1 -1.9381 1.5942 8.5707 43 1 -4.2678 2.7355 8.2709 44 1 1.2529 4.0218 5.7111 45 1 1.9094 2.9103 3.6174 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000183893509.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:40:31 Heat of formation + Delta-G solvation = -77.289471 kcal Electronic energy + Delta-G solvation = -29701.302274 eV Core-core repulsion = 25490.582355 eV Total energy + Delta-G solvation = -4210.719919 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -43.29498 -41.24781 -39.65610 -39.57050 -37.12921 -36.99157 -36.00097 -34.42369 -33.27608 -32.32210 -31.89689 -29.25935 -28.68246 -27.77427 -25.19624 -24.08414 -24.00845 -23.37850 -22.05617 -21.45663 -21.00020 -19.49497 -19.02177 -18.29283 -17.89760 -17.61255 -17.37361 -16.74928 -16.48090 -16.30976 -16.26261 -16.19464 -15.76026 -15.56203 -15.22892 -14.97037 -14.78709 -14.61887 -14.48665 -14.14218 -13.99869 -13.60464 -13.34954 -13.27263 -13.20182 -13.00046 -12.91742 -12.67395 -12.19298 -12.11121 -12.08521 -12.03904 -11.62684 -11.29933 -11.08191 -10.98704 -10.78485 -10.54648 -10.38090 -10.04006 -10.01622 -9.64403 -8.17442 -6.35162 -0.32040 0.33024 0.66892 1.24578 1.44383 1.45178 1.55646 1.93853 1.98738 2.32619 2.33457 2.56577 2.85368 3.10816 3.12209 3.56706 3.64662 3.88313 3.92210 3.99639 4.28338 4.30587 4.34544 4.44335 4.45853 4.52910 4.53488 4.58045 4.71179 4.74076 4.75749 4.98216 5.02953 5.20544 5.21720 5.35406 5.40393 5.41182 5.52160 5.58239 5.75317 5.81206 5.87898 5.90396 6.05965 6.13736 6.41561 6.71686 6.91084 7.13740 7.30408 7.48984 8.88176 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.017834 B = 0.002353 C = 0.002250 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1569.666922 B =11898.483572 C =12443.676283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.120 4.120 3 C 0.278 3.722 4 H -0.001 1.001 5 C -0.549 4.549 6 H 0.072 0.928 7 C 0.016 3.984 8 N -0.915 5.915 9 Si 0.971 3.029 10 H -0.270 1.270 11 H -0.287 1.287 12 H -0.265 1.265 13 N -0.697 5.697 14 C 0.537 3.463 15 O -0.584 6.584 16 C -0.132 4.132 17 C -0.079 4.079 18 C -0.098 4.098 19 C -0.096 4.096 20 C 0.159 3.841 21 N -0.576 5.576 22 C 0.515 3.485 23 O -0.494 6.494 24 C 0.070 3.930 25 N -0.713 5.713 26 C 0.694 3.306 27 O -0.580 6.580 28 C -0.097 4.097 29 C -0.089 4.089 30 H 0.039 0.961 31 H 0.026 0.974 32 H 0.047 0.953 33 H 0.074 0.926 34 H 0.042 0.958 35 H 0.266 0.734 36 H 0.402 0.598 37 H 0.122 0.878 38 H 0.141 0.859 39 H 0.114 0.886 40 H 0.124 0.876 41 H 0.161 0.839 42 H 0.149 0.851 43 H 0.453 0.547 44 H 0.152 0.848 45 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.322 5.971 27.937 30.376 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.159 4.159 3 C 0.174 3.826 4 H 0.017 0.983 5 C -0.587 4.587 6 H 0.090 0.910 7 C -0.184 4.184 8 N -0.553 5.553 9 Si 0.796 3.204 10 H -0.196 1.196 11 H -0.212 1.212 12 H -0.189 1.189 13 N -0.346 5.346 14 C 0.325 3.675 15 O -0.467 6.467 16 C -0.135 4.135 17 C -0.098 4.098 18 C -0.116 4.116 19 C -0.097 4.097 20 C 0.039 3.961 21 N -0.322 5.322 22 C 0.304 3.696 23 O -0.365 6.365 24 C -0.056 4.056 25 N -0.378 5.378 26 C 0.394 3.606 27 O -0.456 6.456 28 C -0.115 4.115 29 C -0.108 4.108 30 H 0.058 0.942 31 H 0.045 0.955 32 H 0.066 0.934 33 H 0.093 0.907 34 H 0.060 0.940 35 H 0.075 0.925 36 H 0.238 0.762 37 H 0.140 0.860 38 H 0.159 0.841 39 H 0.132 0.868 40 H 0.142 0.858 41 H 0.178 0.822 42 H 0.166 0.834 43 H 0.300 0.700 44 H 0.170 0.830 45 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -10.535 6.191 26.805 29.459 hybrid contribution 0.663 -0.271 -0.724 1.018 sum -9.872 5.920 26.081 28.508 Atomic orbital electron populations 1.21682 0.97135 0.99192 1.00119 1.21789 0.93614 0.99059 1.01447 1.18430 0.93872 0.89211 0.81038 0.98302 1.21554 0.91197 1.39145 1.06851 0.91001 1.25775 1.03415 0.94295 0.94921 1.70043 1.37129 1.38221 1.09887 0.85357 0.78963 0.78920 0.77179 1.19550 1.21243 1.18900 1.46215 1.15123 1.55460 1.17768 1.18790 0.82162 0.78633 0.87883 1.90712 1.52537 1.61546 1.41878 1.20123 0.96902 1.02502 0.94013 1.21277 0.94834 0.95361 0.98346 1.21173 1.00056 0.98608 0.91812 1.20362 0.94302 0.99281 0.95772 1.20642 1.00185 0.89287 0.85990 1.46516 1.08826 1.39625 1.37207 1.21564 0.89276 0.79891 0.78859 1.90827 1.14693 1.66127 1.64858 1.22728 0.79954 1.01799 1.01116 1.45429 1.11573 1.41478 1.39329 1.16093 0.81897 0.81115 0.81481 1.91005 1.52726 1.55984 1.45906 1.21243 0.96319 0.96435 0.97491 1.21513 0.99209 0.97858 0.92221 0.94181 0.95485 0.93396 0.90723 0.93972 0.92528 0.76197 0.85975 0.84144 0.86806 0.85801 0.82192 0.83355 0.70018 0.83018 0.84071 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.79 8.51 71.98 0.61 -5.18 16 2 C -0.12 -6.05 5.45 30.60 0.17 -5.89 16 3 C 0.28 14.56 2.24 44.24 0.10 14.66 16 4 H 0.00 -0.06 7.58 -2.39 -0.02 -0.07 16 5 C -0.55 -29.33 8.73 25.60 0.22 -29.10 16 6 H 0.07 3.59 7.74 -2.91 -0.02 3.56 16 7 C 0.02 0.87 5.29 84.66 0.45 1.32 16 8 N -0.91 -52.64 11.29 21.45 0.24 -52.40 16 9 Si 0.97 42.18 29.54 68.60 2.03 44.21 16 10 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 11 H -0.29 -12.45 7.11 99.48 0.71 -11.74 16 12 H -0.26 -11.03 7.11 99.48 0.71 -10.32 16 13 N -0.70 -30.08 4.97 -448.97 -2.23 -32.31 16 14 C 0.54 22.95 6.34 86.79 0.55 23.50 16 15 O -0.58 -29.44 13.48 -3.89 -0.05 -29.49 16 16 C -0.13 -4.40 5.87 -20.09 -0.12 -4.52 16 17 C -0.08 -2.43 9.60 22.53 0.22 -2.21 16 18 C -0.10 -2.38 9.68 22.23 0.22 -2.17 16 19 C -0.10 -1.95 5.47 -19.81 -0.11 -2.06 16 20 C 0.16 2.36 5.82 85.63 0.50 2.86 16 21 N -0.58 -8.33 2.59 -777.21 -2.01 -10.34 16 22 C 0.51 6.23 8.32 87.94 0.73 6.97 16 23 O -0.49 -8.80 17.76 -2.86 -0.05 -8.85 16 24 C 0.07 0.19 7.97 85.76 0.68 0.87 16 25 N -0.71 -4.74 6.58 -480.29 -3.16 -7.90 16 26 C 0.69 10.99 8.62 179.44 1.55 12.54 16 27 O -0.58 -13.78 17.49 -3.85 -0.07 -13.85 16 28 C -0.10 -2.04 9.68 22.23 0.22 -1.82 16 29 C -0.09 -2.34 9.54 22.52 0.21 -2.13 16 30 H 0.04 1.83 5.64 -2.38 -0.01 1.82 16 31 H 0.03 1.35 7.84 -2.39 -0.02 1.33 16 32 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16 33 H 0.07 4.17 5.95 -2.38 -0.01 4.15 16 34 H 0.04 1.99 8.14 -2.39 -0.02 1.97 16 35 H 0.27 14.46 8.31 -92.71 -0.77 13.69 16 36 H 0.40 14.72 6.57 -92.71 -0.61 14.11 16 37 H 0.12 4.04 7.65 -2.91 -0.02 4.01 16 38 H 0.14 3.16 8.06 -2.91 -0.02 3.14 16 39 H 0.11 1.56 7.81 -2.39 -0.02 1.54 16 40 H 0.12 1.40 7.94 -2.39 -0.02 1.38 16 41 H 0.16 -0.59 8.14 -2.39 -0.02 -0.61 16 42 H 0.15 -0.14 8.14 -2.39 -0.02 -0.16 16 43 H 0.45 0.99 8.96 -92.71 -0.83 0.16 16 44 H 0.15 2.59 8.06 -2.91 -0.02 2.56 16 45 H 0.14 3.32 6.41 -2.91 -0.02 3.30 16 Total: -1.00 -78.61 379.24 0.51 -78.10 By element: Atomic # 1 Polarization: 25.57 SS G_CDS: -0.38 Total: 25.19 kcal Atomic # 6 Polarization: 1.45 SS G_CDS: 6.20 Total: 7.65 kcal Atomic # 7 Polarization: -95.79 SS G_CDS: -7.16 Total: -102.96 kcal Atomic # 8 Polarization: -52.02 SS G_CDS: -0.17 Total: -52.19 kcal Atomic # 14 Polarization: 42.18 SS G_CDS: 2.03 Total: 44.21 kcal Total: -78.61 0.51 -78.10 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183893509.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.811 kcal (2) G-P(sol) polarization free energy of solvation -78.609 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.798 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.508 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.100 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.289 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds