Wall clock time and date at job start Wed Apr 1 2020 03:42:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.47457 * 2 1 4 4 H 1.08995 * 109.46890 * 54.99758 * 3 2 1 5 5 C 1.50699 * 109.47261 * 175.00084 * 3 2 1 6 6 H 1.07996 * 120.00063 * 120.00200 * 5 3 2 7 7 C 1.37883 * 119.99640 * 299.99974 * 5 3 2 8 8 N 1.31512 * 120.00453 * 359.97438 * 7 5 3 9 9 Si 1.86800 * 119.99750 * 180.02562 * 7 5 3 10 10 H 1.48504 * 109.46906 * 59.99804 * 9 7 5 11 11 H 1.48503 * 109.47172 * 179.97438 * 9 7 5 12 12 H 1.48499 * 109.47184 * 300.00329 * 9 7 5 13 13 N 1.46496 * 109.46916 * 295.00113 * 3 2 1 14 14 C 1.34777 * 120.00271 * 85.00139 * 13 3 2 15 15 O 1.21278 * 119.99854 * 359.97438 * 14 13 3 16 16 C 1.50703 * 120.00161 * 179.97438 * 14 13 3 17 17 C 1.53000 * 109.46912 * 179.97438 * 16 14 13 18 18 N 1.46499 * 109.46840 * 179.97438 * 17 16 14 19 19 N 1.39553 * 119.01512 * 270.00044 * 18 17 16 20 20 H 0.97004 * 119.00925 * 0.02562 * 19 18 17 21 21 C 1.34732 * 121.98044 * 180.02562 * 19 18 17 22 22 O 1.21534 * 120.26050 * 179.97438 * 21 19 18 23 23 C 1.47904 * 119.47429 * 359.97438 * 21 19 18 24 24 C 1.38782 * 121.60970 * 179.97438 * 23 21 19 25 25 C 1.38416 * 119.61782 * 179.97438 * 24 23 21 26 26 C 1.38366 * 120.53746 * 0.04678 * 25 24 23 27 27 C 1.38411 * 120.53496 * 359.97438 * 26 25 24 28 28 C 1.38767 * 119.62111 * 0.02562 * 27 26 25 29 29 C 1.34734 * 119.01190 * 89.73735 * 18 17 16 30 30 O 1.21536 * 120.25893 * 359.97438 * 29 18 17 31 31 H 1.08999 * 109.47384 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.47216 * 299.99992 * 1 2 3 33 33 H 1.09003 * 109.46746 * 60.00066 * 1 2 3 34 34 H 1.08999 * 109.47216 * 240.00007 * 2 1 3 35 35 H 1.08999 * 109.46972 * 120.00383 * 2 1 3 36 36 H 0.97000 * 120.00439 * 179.97438 * 8 7 5 37 37 H 0.97005 * 120.00266 * 264.99556 * 13 3 2 38 38 H 1.09001 * 109.46980 * 59.99654 * 16 14 13 39 39 H 1.08992 * 109.47158 * 299.99760 * 16 14 13 40 40 H 1.09002 * 109.47398 * 300.00078 * 17 16 14 41 41 H 1.09001 * 109.47194 * 60.00258 * 17 16 14 42 42 H 1.08000 * 120.19697 * 0.02562 * 24 23 21 43 43 H 1.07991 * 119.72759 * 180.02562 * 25 24 23 44 44 H 1.07999 * 119.73178 * 180.02562 * 26 25 24 45 45 H 1.08003 * 120.18517 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9815 0.8418 5 6 3.5420 1.4442 0.1238 6 1 4.1473 1.8888 -0.6523 7 6 4.1433 0.8783 1.2280 8 7 3.4062 0.3374 2.1734 9 14 6.0049 0.8811 1.3819 10 1 6.4995 2.2813 1.3822 11 1 6.3977 0.2176 2.6510 12 1 6.5975 0.1472 0.2349 13 7 1.6525 2.0974 -1.2518 14 6 0.4353 2.6644 -1.3669 15 8 -0.3394 2.6320 -0.4344 16 6 0.0368 3.3387 -2.6545 17 6 -1.3825 3.8944 -2.5211 18 7 -1.7696 4.5504 -3.7726 19 7 -1.4963 5.9089 -3.9374 20 1 -1.0554 6.3905 -3.2199 21 6 -1.8264 6.5718 -5.0629 22 8 -1.5740 7.7555 -5.1729 23 6 -2.4985 5.8475 -6.1635 24 6 -2.8587 6.4865 -7.3416 25 6 -3.4856 5.7684 -8.3452 26 6 -3.7559 4.4213 -8.1821 27 6 -3.4034 3.7698 -7.0129 28 6 -2.7743 4.4758 -5.9973 29 6 -2.3739 3.8227 -4.7320 30 8 -2.5922 2.6399 -4.5575 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 -0.3633 0.5138 -0.8900 34 1 1.8933 -0.5138 -0.8900 35 1 1.8933 -0.5139 0.8899 36 1 3.8292 -0.0611 2.9500 37 1 2.2720 2.1231 -1.9978 38 1 0.0682 2.6146 -3.4686 39 1 0.7282 4.1541 -2.8667 40 1 -2.0737 3.0787 -2.3091 41 1 -1.4142 4.6184 -1.7069 42 1 -2.6503 7.5377 -7.4750 43 1 -3.7662 6.2637 -9.2629 44 1 -4.2453 3.8735 -8.9738 45 1 -3.6175 2.7182 -6.8914 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000183934923.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:42:00 Heat of formation + Delta-G solvation = -44.638727 kcal Electronic energy + Delta-G solvation = -29617.748038 eV Core-core repulsion = 25408.443961 eV Total energy + Delta-G solvation = -4209.304076 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.63900 -39.52718 -39.10393 -38.71088 -36.75468 -35.20252 -33.38102 -32.42333 -31.78831 -31.59567 -31.06301 -29.83214 -27.10025 -25.47628 -24.94016 -23.47959 -22.69820 -22.06999 -20.25577 -19.77436 -19.37038 -19.30743 -18.07709 -17.20983 -16.36281 -16.34115 -16.04756 -15.98089 -15.46086 -15.27412 -15.15322 -14.95078 -14.75134 -14.48609 -14.28564 -14.11851 -13.62630 -13.37448 -12.95864 -12.70621 -12.57480 -12.49377 -12.02815 -11.90541 -11.56176 -11.43747 -11.26289 -11.15712 -11.01630 -10.83981 -10.73440 -10.47052 -10.35477 -10.18978 -9.64943 -9.64092 -9.61982 -9.15882 -9.07010 -8.60196 -8.52121 -7.87949 -6.15013 -4.24811 0.02722 0.52735 1.26944 2.15324 2.31231 2.86849 3.23266 3.28522 3.29187 3.31053 3.39968 3.72495 4.00396 4.24680 4.28725 4.35642 4.65374 4.67496 4.79719 4.83795 4.91630 5.03880 5.16054 5.27382 5.35065 5.41419 5.55099 5.60329 5.72142 5.80952 5.81517 5.85256 6.17883 6.30843 6.39084 6.45291 6.65183 7.03225 7.12829 7.17335 7.29698 7.33918 7.40635 7.58742 7.69263 7.74120 7.86688 8.15530 8.60244 8.73071 9.05623 9.42450 10.90140 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.019706 B = 0.002199 C = 0.002106 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1420.522675 B =12730.707978 C =13293.879950 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.128 4.128 3 C 0.270 3.730 4 H 0.050 0.950 5 C -0.536 4.536 6 H 0.060 0.940 7 C 0.067 3.933 8 N -0.881 5.881 9 Si 0.901 3.099 10 H -0.277 1.277 11 H -0.286 1.286 12 H -0.276 1.276 13 N -0.705 5.705 14 C 0.507 3.493 15 O -0.550 6.550 16 C -0.163 4.163 17 C 0.129 3.871 18 N -0.401 5.401 19 N -0.502 5.502 20 H 0.430 0.570 21 C 0.563 3.437 22 O -0.518 6.518 23 C -0.108 4.108 24 C -0.063 4.063 25 C -0.102 4.102 26 C -0.099 4.099 27 C -0.063 4.063 28 C -0.102 4.102 29 C 0.558 3.442 30 O -0.505 6.505 31 H 0.023 0.977 32 H 0.049 0.951 33 H 0.038 0.962 34 H 0.031 0.969 35 H 0.099 0.901 36 H 0.265 0.735 37 H 0.389 0.611 38 H 0.095 0.905 39 H 0.091 0.909 40 H 0.119 0.881 41 H 0.100 0.900 42 H 0.145 0.855 43 H 0.138 0.862 44 H 0.138 0.862 45 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.162 9.939 -20.313 26.165 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.167 4.167 3 C 0.169 3.831 4 H 0.068 0.932 5 C -0.574 4.574 6 H 0.078 0.922 7 C -0.136 4.136 8 N -0.519 5.519 9 Si 0.728 3.272 10 H -0.202 1.202 11 H -0.211 1.211 12 H -0.202 1.202 13 N -0.353 5.353 14 C 0.291 3.709 15 O -0.430 6.430 16 C -0.205 4.205 17 C 0.009 3.991 18 N -0.227 5.227 19 N -0.253 5.253 20 H 0.275 0.725 21 C 0.350 3.650 22 O -0.392 6.392 23 C -0.112 4.112 24 C -0.082 4.082 25 C -0.120 4.120 26 C -0.117 4.117 27 C -0.082 4.082 28 C -0.106 4.106 29 C 0.346 3.654 30 O -0.378 6.378 31 H 0.042 0.958 32 H 0.068 0.932 33 H 0.058 0.942 34 H 0.049 0.951 35 H 0.117 0.883 36 H 0.075 0.925 37 H 0.221 0.779 38 H 0.114 0.886 39 H 0.109 0.891 40 H 0.137 0.863 41 H 0.118 0.882 42 H 0.163 0.837 43 H 0.156 0.844 44 H 0.156 0.844 45 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -13.752 9.697 -19.517 25.770 hybrid contribution 1.668 0.160 0.085 1.678 sum -12.084 9.857 -19.432 24.916 Atomic orbital electron populations 1.21835 0.98258 0.98135 1.01200 1.21937 0.92684 0.99768 1.02295 1.18799 0.94186 0.89236 0.80897 0.93247 1.21187 0.90711 1.39238 1.06310 0.92184 1.24884 0.98600 0.94776 0.95382 1.69878 1.35239 1.37434 1.09321 0.86519 0.84859 0.78306 0.77478 1.20207 1.21111 1.20163 1.46504 1.14512 1.55631 1.18627 1.19990 0.82998 0.79565 0.88367 1.90691 1.51313 1.60348 1.40625 1.22077 0.97267 1.02130 0.98996 1.21730 0.96676 0.98886 0.81853 1.47501 1.58952 0.97566 1.18699 1.45292 1.61277 0.98872 1.19869 0.72530 1.18100 0.79168 0.86265 0.81425 1.90901 1.55441 1.13802 1.79055 1.19986 1.02077 0.93162 0.95934 1.21194 0.95049 1.00914 0.91005 1.21462 0.97156 0.94340 0.99047 1.21478 0.98218 0.94750 0.97271 1.21224 0.94584 1.00928 0.91464 1.20059 1.01975 0.93249 0.95336 1.18057 0.78335 0.86091 0.82879 1.90899 1.54772 1.13443 1.78647 0.95830 0.93155 0.94246 0.95052 0.88293 0.92469 0.77906 0.88618 0.89096 0.86316 0.88183 0.83718 0.84420 0.84372 0.83574 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.02 8.51 37.16 0.32 -2.70 16 2 C -0.13 -3.07 5.45 -26.73 -0.15 -3.21 16 3 C 0.27 6.59 2.24 -69.08 -0.15 6.44 16 4 H 0.05 1.40 7.58 -51.93 -0.39 1.00 16 5 C -0.54 -13.83 8.73 -34.44 -0.30 -14.13 16 6 H 0.06 1.48 7.74 -52.49 -0.41 1.07 16 7 C 0.07 1.77 5.29 -17.82 -0.09 1.67 16 8 N -0.88 -24.35 11.29 55.43 0.63 -23.72 16 9 Si 0.90 20.34 29.54 -169.99 -5.02 15.32 16 10 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 11 H -0.29 -6.45 7.11 56.52 0.40 -6.05 16 12 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 13 N -0.71 -13.81 5.02 -54.94 -0.28 -14.09 16 14 C 0.51 9.09 6.40 -10.98 -0.07 9.02 16 15 O -0.55 -11.63 13.12 5.56 0.07 -11.55 16 16 C -0.16 -2.09 6.02 -27.88 -0.17 -2.26 16 17 C 0.13 1.55 4.82 -4.04 -0.02 1.53 16 18 N -0.40 -4.43 3.50 -61.24 -0.21 -4.64 16 19 N -0.50 -4.91 6.26 30.53 0.19 -4.71 16 20 H 0.43 3.43 8.72 -183.01 -1.60 1.83 16 21 C 0.56 6.12 8.01 -12.32 -0.10 6.02 16 22 O -0.52 -6.72 17.33 5.34 0.09 -6.63 16 23 C -0.11 -1.05 5.89 -104.73 -0.62 -1.67 16 24 C -0.06 -0.47 9.65 -39.31 -0.38 -0.85 16 25 C -0.10 -0.55 10.03 -39.47 -0.40 -0.94 16 26 C -0.10 -0.55 10.03 -39.47 -0.40 -0.95 16 27 C -0.06 -0.51 9.65 -39.32 -0.38 -0.89 16 28 C -0.10 -1.04 5.89 -104.74 -0.62 -1.66 16 29 C 0.56 6.80 7.72 -12.32 -0.10 6.70 16 30 O -0.50 -7.42 16.02 5.33 0.09 -7.34 16 31 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.05 1.17 7.85 -51.93 -0.41 0.77 16 33 H 0.04 0.84 5.64 -51.93 -0.29 0.55 16 34 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.10 2.63 5.95 -51.93 -0.31 2.32 16 36 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 37 H 0.39 6.65 8.54 -40.82 -0.35 6.30 16 38 H 0.10 1.21 8.14 -51.93 -0.42 0.79 16 39 H 0.09 0.99 8.14 -51.93 -0.42 0.56 16 40 H 0.12 1.63 7.32 -51.93 -0.38 1.25 16 41 H 0.10 1.09 8.06 -51.93 -0.42 0.67 16 42 H 0.15 0.97 7.77 -52.49 -0.41 0.56 16 43 H 0.14 0.35 8.06 -52.49 -0.42 -0.07 16 44 H 0.14 0.39 8.06 -52.49 -0.42 -0.04 16 45 H 0.15 1.10 7.76 -52.48 -0.41 0.69 16 LS Contribution 377.68 15.07 5.69 5.69 Total: -1.00 -32.46 377.68 -9.41 -41.87 By element: Atomic # 1 Polarization: 14.70 SS G_CDS: -7.04 Total: 7.66 kcal Atomic # 6 Polarization: 5.75 SS G_CDS: -3.62 Total: 2.13 kcal Atomic # 7 Polarization: -47.49 SS G_CDS: 0.33 Total: -47.16 kcal Atomic # 8 Polarization: -25.77 SS G_CDS: 0.25 Total: -25.52 kcal Atomic # 14 Polarization: 20.34 SS G_CDS: -5.02 Total: 15.32 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -32.46 -9.41 -41.87 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183934923.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.771 kcal (2) G-P(sol) polarization free energy of solvation -32.462 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.232 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.406 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.868 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.639 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds