Wall clock time and date at job start Wed Apr 1 2020 03:42:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.47457 * 2 1 4 4 H 1.08995 * 109.46890 * 54.99758 * 3 2 1 5 5 C 1.50699 * 109.47261 * 175.00084 * 3 2 1 6 6 H 1.07996 * 120.00063 * 120.00200 * 5 3 2 7 7 C 1.37883 * 119.99640 * 299.99974 * 5 3 2 8 8 N 1.31512 * 120.00453 * 359.97438 * 7 5 3 9 9 Si 1.86800 * 119.99750 * 180.02562 * 7 5 3 10 10 H 1.48504 * 109.46906 * 59.99804 * 9 7 5 11 11 H 1.48503 * 109.47172 * 179.97438 * 9 7 5 12 12 H 1.48499 * 109.47184 * 300.00329 * 9 7 5 13 13 N 1.46496 * 109.46916 * 295.00113 * 3 2 1 14 14 C 1.34777 * 120.00271 * 85.00139 * 13 3 2 15 15 O 1.21278 * 119.99854 * 359.97438 * 14 13 3 16 16 C 1.50703 * 120.00161 * 179.97438 * 14 13 3 17 17 C 1.53000 * 109.46912 * 179.97438 * 16 14 13 18 18 N 1.46499 * 109.46840 * 179.97438 * 17 16 14 19 19 N 1.39553 * 119.01512 * 270.00044 * 18 17 16 20 20 H 0.97004 * 119.00925 * 0.02562 * 19 18 17 21 21 C 1.34732 * 121.98044 * 180.02562 * 19 18 17 22 22 O 1.21534 * 120.26050 * 179.97438 * 21 19 18 23 23 C 1.47904 * 119.47429 * 359.97438 * 21 19 18 24 24 C 1.38782 * 121.60970 * 179.97438 * 23 21 19 25 25 C 1.38416 * 119.61782 * 179.97438 * 24 23 21 26 26 C 1.38366 * 120.53746 * 0.04678 * 25 24 23 27 27 C 1.38411 * 120.53496 * 359.97438 * 26 25 24 28 28 C 1.38767 * 119.62111 * 0.02562 * 27 26 25 29 29 C 1.34734 * 119.01190 * 89.73735 * 18 17 16 30 30 O 1.21536 * 120.25893 * 359.97438 * 29 18 17 31 31 H 1.08999 * 109.47384 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.47216 * 299.99992 * 1 2 3 33 33 H 1.09003 * 109.46746 * 60.00066 * 1 2 3 34 34 H 1.08999 * 109.47216 * 240.00007 * 2 1 3 35 35 H 1.08999 * 109.46972 * 120.00383 * 2 1 3 36 36 H 0.97000 * 120.00439 * 179.97438 * 8 7 5 37 37 H 0.97005 * 120.00266 * 264.99556 * 13 3 2 38 38 H 1.09001 * 109.46980 * 59.99654 * 16 14 13 39 39 H 1.08992 * 109.47158 * 299.99760 * 16 14 13 40 40 H 1.09002 * 109.47398 * 300.00078 * 17 16 14 41 41 H 1.09001 * 109.47194 * 60.00258 * 17 16 14 42 42 H 1.08000 * 120.19697 * 0.02562 * 24 23 21 43 43 H 1.07991 * 119.72759 * 180.02562 * 25 24 23 44 44 H 1.07999 * 119.73178 * 180.02562 * 26 25 24 45 45 H 1.08003 * 120.18517 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9815 0.8418 5 6 3.5420 1.4442 0.1238 6 1 4.1473 1.8888 -0.6523 7 6 4.1433 0.8783 1.2280 8 7 3.4062 0.3374 2.1734 9 14 6.0049 0.8811 1.3819 10 1 6.4995 2.2813 1.3822 11 1 6.3977 0.2176 2.6510 12 1 6.5975 0.1472 0.2349 13 7 1.6525 2.0974 -1.2518 14 6 0.4353 2.6644 -1.3669 15 8 -0.3394 2.6320 -0.4344 16 6 0.0368 3.3387 -2.6545 17 6 -1.3825 3.8944 -2.5211 18 7 -1.7696 4.5504 -3.7726 19 7 -1.4963 5.9089 -3.9374 20 1 -1.0554 6.3905 -3.2199 21 6 -1.8264 6.5718 -5.0629 22 8 -1.5740 7.7555 -5.1729 23 6 -2.4985 5.8475 -6.1635 24 6 -2.8587 6.4865 -7.3416 25 6 -3.4856 5.7684 -8.3452 26 6 -3.7559 4.4213 -8.1821 27 6 -3.4034 3.7698 -7.0129 28 6 -2.7743 4.4758 -5.9973 29 6 -2.3739 3.8227 -4.7320 30 8 -2.5922 2.6399 -4.5575 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 -0.3633 0.5138 -0.8900 34 1 1.8933 -0.5138 -0.8900 35 1 1.8933 -0.5139 0.8899 36 1 3.8292 -0.0611 2.9500 37 1 2.2720 2.1231 -1.9978 38 1 0.0682 2.6146 -3.4686 39 1 0.7282 4.1541 -2.8667 40 1 -2.0737 3.0787 -2.3091 41 1 -1.4142 4.6184 -1.7069 42 1 -2.6503 7.5377 -7.4750 43 1 -3.7662 6.2637 -9.2629 44 1 -4.2453 3.8735 -8.9738 45 1 -3.6175 2.7182 -6.8914 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000183934923.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:42:00 Heat of formation + Delta-G solvation = -67.086453 kcal Electronic energy + Delta-G solvation = -29618.721444 eV Core-core repulsion = 25408.443961 eV Total energy + Delta-G solvation = -4210.277483 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.46046 -40.80213 -40.20732 -39.43698 -37.72029 -36.97439 -34.43290 -34.24998 -32.84161 -32.41289 -32.19663 -30.95680 -28.93243 -26.50400 -25.62087 -25.00486 -23.98578 -22.78723 -21.94172 -21.07502 -20.50429 -20.05792 -19.13879 -18.69520 -17.52897 -17.36260 -17.06503 -16.99857 -16.83662 -16.61632 -16.25264 -16.02317 -15.70522 -15.64119 -15.15075 -15.03213 -14.84616 -14.66648 -14.49971 -14.02954 -13.68318 -13.46574 -13.39935 -13.16233 -13.06427 -12.90976 -12.65826 -12.47126 -12.39091 -12.28320 -12.18314 -12.02661 -11.60387 -11.57615 -11.35904 -11.05910 -10.71304 -10.50726 -10.22634 -10.20832 -9.62368 -9.50808 -8.15870 -6.33016 -0.62363 -0.06320 0.38206 1.31431 1.44772 1.45908 1.53724 1.61814 1.83261 2.06596 2.36755 2.66566 2.76665 3.02235 3.13498 3.62465 3.64658 3.69275 3.86613 4.00502 4.17376 4.21478 4.28921 4.41964 4.49506 4.50505 4.51112 4.58290 4.67599 4.78182 4.84228 4.88941 5.01145 5.08006 5.27367 5.28201 5.31789 5.44225 5.48764 5.56664 5.62864 5.72754 5.80148 5.92239 6.17676 6.26190 6.42338 6.75086 6.89531 6.97598 7.33856 7.57281 8.89030 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.019706 B = 0.002199 C = 0.002106 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1420.522675 B =12730.707978 C =13293.879950 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.122 4.122 3 C 0.279 3.721 4 H 0.002 0.998 5 C -0.549 4.549 6 H 0.071 0.929 7 C 0.016 3.984 8 N -0.914 5.914 9 Si 0.968 3.032 10 H -0.271 1.271 11 H -0.287 1.287 12 H -0.266 1.266 13 N -0.706 5.706 14 C 0.505 3.495 15 O -0.584 6.584 16 C -0.145 4.145 17 C 0.135 3.865 18 N -0.397 5.397 19 N -0.495 5.495 20 H 0.438 0.562 21 C 0.562 3.438 22 O -0.543 6.543 23 C -0.126 4.126 24 C -0.067 4.067 25 C -0.087 4.087 26 C -0.086 4.086 27 C -0.070 4.070 28 C -0.123 4.123 29 C 0.553 3.447 30 O -0.538 6.538 31 H 0.042 0.958 32 H 0.028 0.972 33 H 0.044 0.956 34 H 0.038 0.962 35 H 0.071 0.929 36 H 0.265 0.735 37 H 0.403 0.597 38 H 0.103 0.897 39 H 0.119 0.881 40 H 0.100 0.900 41 H 0.110 0.890 42 H 0.152 0.848 43 H 0.176 0.824 44 H 0.174 0.826 45 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.157 10.818 -23.601 29.106 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.161 4.161 3 C 0.175 3.825 4 H 0.020 0.980 5 C -0.587 4.587 6 H 0.089 0.911 7 C -0.184 4.184 8 N -0.552 5.552 9 Si 0.793 3.207 10 H -0.196 1.196 11 H -0.213 1.213 12 H -0.191 1.191 13 N -0.354 5.354 14 C 0.292 3.708 15 O -0.465 6.465 16 C -0.186 4.186 17 C 0.013 3.987 18 N -0.222 5.222 19 N -0.246 5.246 20 H 0.284 0.716 21 C 0.351 3.649 22 O -0.419 6.419 23 C -0.130 4.130 24 C -0.085 4.085 25 C -0.105 4.105 26 C -0.104 4.104 27 C -0.089 4.089 28 C -0.127 4.127 29 C 0.343 3.657 30 O -0.414 6.414 31 H 0.061 0.939 32 H 0.047 0.953 33 H 0.063 0.937 34 H 0.057 0.943 35 H 0.089 0.911 36 H 0.074 0.926 37 H 0.238 0.762 38 H 0.122 0.878 39 H 0.137 0.863 40 H 0.118 0.882 41 H 0.128 0.872 42 H 0.169 0.831 43 H 0.193 0.807 44 H 0.191 0.809 45 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -13.742 10.600 -22.837 28.683 hybrid contribution 1.569 -0.078 1.036 1.881 sum -12.173 10.522 -21.801 27.096 Atomic orbital electron populations 1.21673 0.96894 0.99096 1.00354 1.21796 0.93805 0.99356 1.01157 1.18353 0.93523 0.89106 0.81510 0.98002 1.21553 0.91556 1.38952 1.06615 0.91113 1.25749 1.03144 0.94449 0.95107 1.70034 1.37060 1.38291 1.09835 0.85463 0.79348 0.78430 0.77478 1.19643 1.21286 1.19086 1.46274 1.15667 1.55901 1.17582 1.20755 0.81818 0.78656 0.89603 1.90681 1.52086 1.61313 1.42421 1.21943 0.98212 1.02643 0.95790 1.21558 0.95666 0.98781 0.82683 1.47354 1.58611 0.98008 1.18178 1.45247 1.61057 0.98177 1.20123 0.71649 1.18344 0.78779 0.86001 0.81740 1.90882 1.56695 1.14768 1.79601 1.20001 1.03376 0.93040 0.96553 1.21445 0.94932 1.01454 0.90713 1.21904 0.94948 0.94151 0.99451 1.21890 0.96740 0.94976 0.96813 1.21422 0.94437 1.01114 0.91964 1.19987 1.04004 0.93618 0.95047 1.18489 0.77792 0.85830 0.83561 1.90870 1.56234 1.14843 1.79431 0.93882 0.95289 0.93697 0.94334 0.91075 0.92623 0.76224 0.87834 0.86297 0.88228 0.87154 0.83070 0.80705 0.80883 0.83610 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.51 8.51 71.98 0.61 -4.90 16 2 C -0.12 -5.98 5.45 30.59 0.17 -5.81 16 3 C 0.28 13.92 2.24 44.25 0.10 14.02 16 4 H 0.00 0.12 7.58 -2.39 -0.02 0.11 16 5 C -0.55 -28.48 8.73 25.60 0.22 -28.26 16 6 H 0.07 3.43 7.74 -2.91 -0.02 3.41 16 7 C 0.02 0.84 5.29 84.66 0.45 1.29 16 8 N -0.91 -51.83 11.29 21.45 0.24 -51.59 16 9 Si 0.97 41.68 29.54 68.60 2.03 43.71 16 10 H -0.27 -11.37 7.11 99.48 0.71 -10.67 16 11 H -0.29 -12.35 7.11 99.48 0.71 -11.64 16 12 H -0.27 -10.96 7.11 99.48 0.71 -10.25 16 13 N -0.71 -27.61 5.02 -446.11 -2.24 -29.85 16 14 C 0.51 18.15 6.40 87.66 0.56 18.71 16 15 O -0.58 -25.31 13.12 -3.02 -0.04 -25.35 16 16 C -0.14 -3.57 6.02 29.85 0.18 -3.39 16 17 C 0.13 3.20 4.82 86.38 0.42 3.62 16 18 N -0.40 -8.63 3.50 -465.98 -1.63 -10.26 16 19 N -0.49 -9.39 6.26 -175.62 -1.10 -10.49 16 20 H 0.44 6.67 8.72 -213.67 -1.86 4.81 16 21 C 0.56 11.92 8.01 86.81 0.70 12.61 16 22 O -0.54 -13.84 17.33 -3.82 -0.07 -13.91 16 23 C -0.13 -2.31 5.89 -19.94 -0.12 -2.43 16 24 C -0.07 -0.85 9.65 22.44 0.22 -0.63 16 25 C -0.09 -0.59 10.03 22.34 0.22 -0.37 16 26 C -0.09 -0.64 10.03 22.34 0.22 -0.42 16 27 C -0.07 -1.01 9.65 22.44 0.22 -0.79 16 28 C -0.12 -2.40 5.89 -19.94 -0.12 -2.51 16 29 C 0.55 13.46 7.72 86.81 0.67 14.13 16 30 O -0.54 -16.07 16.02 -3.83 -0.06 -16.13 16 31 H 0.04 1.72 8.14 -2.39 -0.02 1.70 16 32 H 0.03 1.38 7.85 -2.39 -0.02 1.37 16 33 H 0.04 1.93 5.64 -2.39 -0.01 1.92 16 34 H 0.04 1.79 8.14 -2.39 -0.02 1.77 16 35 H 0.07 3.91 5.95 -2.39 -0.01 3.89 16 36 H 0.26 14.30 8.31 -92.71 -0.77 13.53 16 37 H 0.40 13.39 8.54 -92.70 -0.79 12.60 16 38 H 0.10 2.48 8.14 -2.39 -0.02 2.46 16 39 H 0.12 2.32 8.14 -2.39 -0.02 2.30 16 40 H 0.10 2.82 7.32 -2.39 -0.02 2.80 16 41 H 0.11 2.38 8.06 -2.39 -0.02 2.36 16 42 H 0.15 1.70 7.77 -2.91 -0.02 1.68 16 43 H 0.18 -0.07 8.06 -2.92 -0.02 -0.10 16 44 H 0.17 0.10 8.06 -2.91 -0.02 0.08 16 45 H 0.15 2.05 7.76 -2.91 -0.02 2.03 16 Total: -1.00 -73.13 377.68 0.25 -72.88 By element: Atomic # 1 Polarization: 27.73 SS G_CDS: -1.60 Total: 26.13 kcal Atomic # 6 Polarization: 10.14 SS G_CDS: 4.72 Total: 14.86 kcal Atomic # 7 Polarization: -97.46 SS G_CDS: -4.73 Total: -102.19 kcal Atomic # 8 Polarization: -55.22 SS G_CDS: -0.17 Total: -55.39 kcal Atomic # 14 Polarization: 41.68 SS G_CDS: 2.03 Total: 43.71 kcal Total: -73.13 0.25 -72.88 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183934923.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.791 kcal (2) G-P(sol) polarization free energy of solvation -73.128 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.336 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.250 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.878 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds