Wall clock time and date at job start Wed Apr 1 2020 03:41:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.46808 * 2 1 4 4 H 1.08999 * 109.47106 * 305.36570 * 3 2 1 5 5 C 1.50702 * 109.46889 * 185.37103 * 3 2 1 6 6 H 1.08004 * 119.99944 * 244.79662 * 5 3 2 7 7 C 1.37873 * 120.00187 * 64.79566 * 5 3 2 8 8 N 1.31515 * 119.99871 * 7.04842 * 7 5 3 9 9 Si 1.86803 * 120.00139 * 187.04386 * 7 5 3 10 10 H 1.48491 * 109.47003 * 84.99341 * 9 7 5 11 11 H 1.48504 * 109.47072 * 204.99537 * 9 7 5 12 12 H 1.48495 * 109.46926 * 324.99099 * 9 7 5 13 13 N 1.46500 * 109.47312 * 65.37188 * 3 2 1 14 14 C 1.34778 * 119.99915 * 274.99725 * 13 3 2 15 15 O 1.21597 * 119.99945 * 0.02562 * 14 13 3 16 16 C 1.47455 * 120.00204 * 180.02562 * 14 13 3 17 17 N 1.32030 * 126.44198 * 359.68781 * 16 14 13 18 18 N 1.28461 * 110.20769 * 179.88100 * 17 16 14 19 19 C 1.40162 * 124.93321 * 180.15461 * 18 17 16 20 20 C 1.38872 * 120.01463 * 179.97438 * 19 18 17 21 21 C 1.38050 * 119.98524 * 179.74611 * 20 19 18 22 22 C 1.38759 * 120.01428 * 0.56183 * 21 20 19 23 23 O 1.35916 * 119.98890 * 179.72349 * 22 21 20 24 24 C 1.42901 * 117.00048 * 359.97289 * 23 22 21 25 25 C 1.38759 * 120.02453 * 359.69575 * 22 21 20 26 26 C 1.38048 * 120.01560 * 0.02562 * 25 22 21 27 27 C 1.36091 * 110.13623 * 0.39361 * 18 17 16 28 28 C 1.35776 * 107.06589 * 359.76693 * 27 18 17 29 29 O 1.36075 * 127.26099 * 180.02562 * 28 27 18 30 30 H 1.09002 * 109.46784 * 60.00411 * 1 2 3 31 31 H 1.08999 * 109.47328 * 300.00262 * 1 2 3 32 32 H 1.09003 * 109.46985 * 180.02562 * 1 2 3 33 33 H 1.09001 * 109.47253 * 119.99337 * 2 1 3 34 34 H 1.08999 * 109.47328 * 239.99738 * 2 1 3 35 35 H 0.96998 * 120.00201 * 180.02562 * 8 7 5 36 36 H 0.96996 * 120.00012 * 95.00177 * 13 3 2 37 37 H 1.07997 * 120.01045 * 0.02562 * 20 19 18 38 38 H 1.08004 * 119.99105 * 180.25745 * 21 20 19 39 39 H 1.08995 * 109.47157 * 300.00158 * 24 23 22 40 40 H 1.08996 * 109.47146 * 60.00220 * 24 23 22 41 41 H 1.09005 * 109.47168 * 180.02562 * 24 23 22 42 42 H 1.08003 * 119.99364 * 180.02562 * 25 22 21 43 43 H 1.08003 * 120.00831 * 180.02562 * 26 25 22 44 44 H 1.07996 * 126.46629 * 179.78402 * 27 18 17 45 45 H 0.96698 * 113.99644 * 269.95599 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6002 1.9833 -0.8380 5 6 3.5411 1.4446 -0.1330 6 1 4.1542 1.8171 0.6744 7 6 4.1317 0.9711 -1.2853 8 7 3.3878 0.6475 -2.3204 9 14 5.9887 0.7892 -1.3763 10 1 6.3863 -0.5217 -0.8032 11 1 6.4243 0.8624 -2.7941 12 1 6.6315 1.8825 -0.6039 13 7 1.6600 2.0948 1.2556 14 6 0.4434 2.6615 1.3793 15 8 -0.3390 2.6309 0.4490 16 6 0.0612 3.3185 2.6428 17 7 0.8038 3.4206 3.7297 18 7 0.1652 4.0560 4.6455 19 6 0.6664 4.3411 5.9230 20 6 -0.1146 5.0376 6.8360 21 6 0.3777 5.3135 8.0959 22 6 1.6568 4.9053 8.4461 23 8 2.1430 5.1822 9.6848 24 6 1.2830 5.8970 10.5745 25 6 2.4396 4.2141 7.5324 26 6 1.9463 3.9326 6.2741 27 6 -1.0706 4.4075 4.1969 28 6 -1.1754 3.9541 2.9214 29 8 -2.2419 4.0830 2.0862 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 0.5139 0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 1.8934 -0.5137 0.8900 34 1 1.8934 -0.5139 -0.8899 35 1 3.8033 0.3140 -3.1310 36 1 2.2841 2.1189 1.9977 37 1 -1.1084 5.3593 6.5621 38 1 -0.2312 5.8515 8.8075 39 1 1.0291 6.8624 10.1370 40 1 0.3719 5.3219 10.7393 41 1 1.7922 6.0522 11.5257 42 1 3.4350 3.8963 7.8056 43 1 2.5555 3.3942 5.5632 44 1 -1.8254 4.9458 4.7509 45 1 -2.8761 3.3553 2.1430 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000183970098.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:41:16 Heat of formation + Delta-G solvation = -0.406988 kcal Electronic energy + Delta-G solvation = -29467.142494 eV Core-core repulsion = 25259.756449 eV Total energy + Delta-G solvation = -4207.386044 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.90760 -40.52515 -38.79410 -37.96317 -37.01607 -34.92748 -33.16823 -32.21043 -31.80776 -30.97918 -30.02182 -29.08621 -27.69321 -26.85186 -24.32637 -23.58467 -22.88116 -21.78874 -21.17810 -20.13501 -19.22705 -19.00801 -18.40551 -17.43927 -17.17346 -16.45793 -16.27888 -16.04869 -15.82336 -15.23123 -15.08260 -14.48895 -14.31964 -14.30414 -14.25765 -13.92020 -13.79052 -13.36883 -13.10158 -13.02939 -12.63811 -12.45436 -12.08049 -11.74021 -11.65591 -11.41024 -11.31152 -11.26445 -10.96599 -10.74467 -10.38273 -10.28480 -10.13714 -9.78116 -9.62084 -9.56257 -9.13810 -9.08192 -9.03094 -8.43632 -8.08607 -7.74906 -6.08563 -4.14371 0.48408 0.79184 1.92460 2.00457 2.18590 2.78091 3.29252 3.29611 3.35891 3.37965 3.86390 4.01341 4.12903 4.27810 4.37502 4.45779 4.51701 4.62905 4.65514 4.71607 4.74992 4.97522 5.06826 5.15746 5.24542 5.34816 5.46737 5.49923 5.70384 5.74405 5.85992 6.10204 6.23466 6.40150 6.45621 6.65409 6.71122 6.89077 7.05464 7.22211 7.37713 7.46520 7.65307 7.72362 7.74991 7.83390 7.94140 8.13955 8.74688 8.84706 9.17332 9.51476 10.99448 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.011898 B = 0.002649 C = 0.002239 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2352.685997 B =10568.048543 C =12500.726066 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.120 4.120 3 C 0.268 3.732 4 H 0.057 0.943 5 C -0.534 4.534 6 H 0.062 0.938 7 C 0.068 3.932 8 N -0.881 5.881 9 Si 0.898 3.102 10 H -0.279 1.279 11 H -0.286 1.286 12 H -0.274 1.274 13 N -0.691 5.691 14 C 0.584 3.416 15 O -0.529 6.529 16 C -0.007 4.007 17 N -0.249 5.249 18 N -0.228 5.228 19 C 0.106 3.894 20 C -0.087 4.087 21 C -0.187 4.187 22 C 0.125 3.875 23 O -0.314 6.314 24 C 0.025 3.975 25 C -0.128 4.128 26 C -0.067 4.067 27 C -0.051 4.051 28 C 0.053 3.947 29 O -0.451 6.451 30 H 0.052 0.948 31 H 0.039 0.961 32 H 0.023 0.977 33 H 0.034 0.966 34 H 0.084 0.916 35 H 0.264 0.736 36 H 0.394 0.606 37 H 0.137 0.863 38 H 0.139 0.861 39 H 0.057 0.943 40 H 0.057 0.943 41 H 0.102 0.898 42 H 0.144 0.856 43 H 0.153 0.847 44 H 0.186 0.814 45 H 0.388 0.612 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.251 9.041 25.543 28.324 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.159 4.159 3 C 0.167 3.833 4 H 0.075 0.925 5 C -0.573 4.573 6 H 0.080 0.920 7 C -0.135 4.135 8 N -0.518 5.518 9 Si 0.726 3.274 10 H -0.205 1.205 11 H -0.212 1.212 12 H -0.199 1.199 13 N -0.338 5.338 14 C 0.366 3.634 15 O -0.405 6.405 16 C -0.170 4.170 17 N -0.083 5.083 18 N -0.011 5.011 19 C 0.016 3.984 20 C -0.108 4.108 21 C -0.206 4.206 22 C 0.079 3.921 23 O -0.227 6.227 24 C -0.070 4.070 25 C -0.147 4.147 26 C -0.086 4.086 27 C -0.191 4.191 28 C -0.002 4.002 29 O -0.256 6.256 30 H 0.071 0.929 31 H 0.059 0.941 32 H 0.042 0.958 33 H 0.053 0.947 34 H 0.102 0.898 35 H 0.074 0.926 36 H 0.227 0.773 37 H 0.155 0.845 38 H 0.157 0.843 39 H 0.076 0.924 40 H 0.076 0.924 41 H 0.120 0.880 42 H 0.162 0.838 43 H 0.171 0.829 44 H 0.203 0.797 45 H 0.243 0.757 Dipole moment (debyes) X Y Z Total from point charges -7.293 9.145 24.997 27.599 hybrid contribution -0.069 -0.135 0.177 0.233 sum -7.361 9.010 25.175 27.733 Atomic orbital electron populations 1.21849 0.98113 0.98143 1.01483 1.21856 0.92931 0.99766 1.01392 1.18860 0.94576 0.89041 0.80850 0.92504 1.21187 0.90562 1.43329 1.02175 0.92032 1.24878 0.98441 0.95144 0.95070 1.69969 1.35356 1.43193 1.03282 0.86512 0.85090 0.78611 0.77202 1.20460 1.21191 1.19900 1.46396 1.13935 1.54784 1.18733 1.16737 0.83400 0.79093 0.84164 1.90799 1.51376 1.59842 1.38469 1.23137 0.94235 1.04792 0.94854 1.73680 1.23693 1.13898 0.97064 1.42154 1.10639 1.38814 1.09516 1.17516 0.95253 1.03706 0.81964 1.20606 0.99885 0.97945 0.92324 1.21028 0.95889 1.06105 0.97582 1.19121 0.92346 0.95344 0.85247 1.86107 1.43028 1.71960 1.21564 1.23115 0.95102 0.95687 0.93099 1.20372 1.01115 1.01455 0.91761 1.20866 0.93311 0.98119 0.96317 1.22798 0.90479 1.09306 0.96491 1.18109 0.89955 1.03003 0.89155 1.84896 1.32429 1.48257 1.60053 0.92865 0.94150 0.95772 0.94729 0.89794 0.92590 0.77322 0.84530 0.84309 0.92422 0.92426 0.88004 0.83798 0.82949 0.79700 0.75719 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.11 8.52 37.16 0.32 -2.80 16 2 C -0.12 -2.95 5.49 -26.73 -0.15 -3.10 16 3 C 0.27 6.95 2.11 -69.08 -0.15 6.80 16 4 H 0.06 1.70 7.55 -51.93 -0.39 1.31 16 5 C -0.53 -14.47 8.67 -34.44 -0.30 -14.77 16 6 H 0.06 1.61 7.73 -52.48 -0.41 1.21 16 7 C 0.07 1.87 5.19 -17.82 -0.09 1.77 16 8 N -0.88 -25.20 12.00 55.43 0.66 -24.53 16 9 Si 0.90 21.00 29.54 -169.99 -5.02 15.98 16 10 H -0.28 -6.42 7.11 56.52 0.40 -6.01 16 11 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 12 H -0.27 -6.33 7.11 56.52 0.40 -5.92 16 13 N -0.69 -15.51 5.02 -56.00 -0.28 -15.79 16 14 C 0.58 12.79 6.40 -12.51 -0.08 12.71 16 15 O -0.53 -12.93 13.66 3.01 0.04 -12.89 16 16 C -0.01 -0.14 7.13 -82.67 -0.59 -0.73 16 17 N -0.25 -4.10 10.84 33.46 0.36 -3.73 16 18 N -0.23 -3.07 3.52 -10.38 -0.04 -3.11 16 19 C 0.11 1.17 6.66 -83.58 -0.56 0.61 16 20 C -0.09 -0.70 9.43 -39.42 -0.37 -1.08 16 21 C -0.19 -1.31 9.03 -39.46 -0.36 -1.67 16 22 C 0.13 1.05 6.69 -39.20 -0.26 0.79 16 23 O -0.31 -2.43 10.50 -19.48 -0.20 -2.64 16 24 C 0.02 0.10 9.81 101.05 0.99 1.09 16 25 C -0.13 -1.15 9.98 -39.46 -0.39 -1.54 16 26 C -0.07 -0.70 9.59 -39.42 -0.38 -1.08 16 27 C -0.05 -0.62 10.81 -16.54 -0.18 -0.80 16 28 C 0.05 0.84 7.35 -39.10 -0.29 0.55 16 29 O -0.45 -6.76 13.20 -22.25 -0.29 -7.05 16 30 H 0.05 1.27 7.87 -51.93 -0.41 0.86 16 31 H 0.04 0.89 5.64 -51.93 -0.29 0.60 16 32 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 34 H 0.08 2.24 6.64 -51.93 -0.34 1.90 16 35 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 36 H 0.39 8.13 8.24 -40.82 -0.34 7.79 16 37 H 0.14 0.78 6.64 -52.49 -0.35 0.44 16 38 H 0.14 0.59 6.29 -52.48 -0.33 0.26 16 39 H 0.06 0.17 7.66 -51.93 -0.40 -0.23 16 40 H 0.06 0.16 7.66 -51.93 -0.40 -0.23 16 41 H 0.10 0.22 8.14 -51.93 -0.42 -0.20 16 42 H 0.14 1.08 8.06 -52.48 -0.42 0.66 16 43 H 0.15 1.68 7.64 -52.48 -0.40 1.28 16 44 H 0.19 1.46 6.96 -52.49 -0.37 1.10 16 45 H 0.39 4.05 9.07 45.56 0.41 4.46 16 LS Contribution 378.82 15.07 5.71 5.71 Total: -1.00 -34.32 378.82 -6.72 -41.05 By element: Atomic # 1 Polarization: 15.08 SS G_CDS: -4.83 Total: 10.24 kcal Atomic # 6 Polarization: -0.41 SS G_CDS: -2.83 Total: -3.24 kcal Atomic # 7 Polarization: -47.87 SS G_CDS: 0.71 Total: -47.16 kcal Atomic # 8 Polarization: -22.12 SS G_CDS: -0.46 Total: -22.58 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.98 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -34.32 -6.72 -41.05 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183970098.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.638 kcal (2) G-P(sol) polarization free energy of solvation -34.322 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.317 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.724 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.045 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.407 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds