Wall clock time and date at job start Wed Apr 1 2020 03:41:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.46808 * 2 1 4 4 H 1.08999 * 109.47106 * 305.36570 * 3 2 1 5 5 C 1.50702 * 109.46889 * 185.37103 * 3 2 1 6 6 H 1.08004 * 119.99944 * 244.79662 * 5 3 2 7 7 C 1.37873 * 120.00187 * 64.79566 * 5 3 2 8 8 N 1.31515 * 119.99871 * 7.04842 * 7 5 3 9 9 Si 1.86803 * 120.00139 * 187.04386 * 7 5 3 10 10 H 1.48491 * 109.47003 * 84.99341 * 9 7 5 11 11 H 1.48504 * 109.47072 * 204.99537 * 9 7 5 12 12 H 1.48495 * 109.46926 * 324.99099 * 9 7 5 13 13 N 1.46500 * 109.47312 * 65.37188 * 3 2 1 14 14 C 1.34778 * 119.99915 * 274.99725 * 13 3 2 15 15 O 1.21597 * 119.99945 * 0.02562 * 14 13 3 16 16 C 1.47455 * 120.00204 * 180.02562 * 14 13 3 17 17 N 1.32030 * 126.44198 * 359.68781 * 16 14 13 18 18 N 1.28461 * 110.20769 * 179.88100 * 17 16 14 19 19 C 1.40162 * 124.93321 * 180.15461 * 18 17 16 20 20 C 1.38872 * 120.01463 * 179.97438 * 19 18 17 21 21 C 1.38050 * 119.98524 * 179.74611 * 20 19 18 22 22 C 1.38759 * 120.01428 * 0.56183 * 21 20 19 23 23 O 1.35916 * 119.98890 * 179.72349 * 22 21 20 24 24 C 1.42901 * 117.00048 * 359.97289 * 23 22 21 25 25 C 1.38759 * 120.02453 * 359.69575 * 22 21 20 26 26 C 1.38048 * 120.01560 * 0.02562 * 25 22 21 27 27 C 1.36091 * 110.13623 * 0.39361 * 18 17 16 28 28 C 1.35776 * 107.06589 * 359.76693 * 27 18 17 29 29 O 1.36075 * 127.26099 * 180.02562 * 28 27 18 30 30 H 1.09002 * 109.46784 * 60.00411 * 1 2 3 31 31 H 1.08999 * 109.47328 * 300.00262 * 1 2 3 32 32 H 1.09003 * 109.46985 * 180.02562 * 1 2 3 33 33 H 1.09001 * 109.47253 * 119.99337 * 2 1 3 34 34 H 1.08999 * 109.47328 * 239.99738 * 2 1 3 35 35 H 0.96998 * 120.00201 * 180.02562 * 8 7 5 36 36 H 0.96996 * 120.00012 * 95.00177 * 13 3 2 37 37 H 1.07997 * 120.01045 * 0.02562 * 20 19 18 38 38 H 1.08004 * 119.99105 * 180.25745 * 21 20 19 39 39 H 1.08995 * 109.47157 * 300.00158 * 24 23 22 40 40 H 1.08996 * 109.47146 * 60.00220 * 24 23 22 41 41 H 1.09005 * 109.47168 * 180.02562 * 24 23 22 42 42 H 1.08003 * 119.99364 * 180.02562 * 25 22 21 43 43 H 1.08003 * 120.00831 * 180.02562 * 26 25 22 44 44 H 1.07996 * 126.46629 * 179.78402 * 27 18 17 45 45 H 0.96698 * 113.99644 * 269.95599 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6002 1.9833 -0.8380 5 6 3.5411 1.4446 -0.1330 6 1 4.1542 1.8171 0.6744 7 6 4.1317 0.9711 -1.2853 8 7 3.3878 0.6475 -2.3204 9 14 5.9887 0.7892 -1.3763 10 1 6.3863 -0.5217 -0.8032 11 1 6.4243 0.8624 -2.7941 12 1 6.6315 1.8825 -0.6039 13 7 1.6600 2.0948 1.2556 14 6 0.4434 2.6615 1.3793 15 8 -0.3390 2.6309 0.4490 16 6 0.0612 3.3185 2.6428 17 7 0.8038 3.4206 3.7297 18 7 0.1652 4.0560 4.6455 19 6 0.6664 4.3411 5.9230 20 6 -0.1146 5.0376 6.8360 21 6 0.3777 5.3135 8.0959 22 6 1.6568 4.9053 8.4461 23 8 2.1430 5.1822 9.6848 24 6 1.2830 5.8970 10.5745 25 6 2.4396 4.2141 7.5324 26 6 1.9463 3.9326 6.2741 27 6 -1.0706 4.4075 4.1969 28 6 -1.1754 3.9541 2.9214 29 8 -2.2419 4.0830 2.0862 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 0.5139 0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 1.8934 -0.5137 0.8900 34 1 1.8934 -0.5139 -0.8899 35 1 3.8033 0.3140 -3.1310 36 1 2.2841 2.1189 1.9977 37 1 -1.1084 5.3593 6.5621 38 1 -0.2312 5.8515 8.8075 39 1 1.0291 6.8624 10.1370 40 1 0.3719 5.3219 10.7393 41 1 1.7922 6.0522 11.5257 42 1 3.4350 3.8963 7.8056 43 1 2.5555 3.3942 5.5632 44 1 -1.8254 4.9458 4.7509 45 1 -2.8761 3.3553 2.1430 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000183970098.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:41:16 Heat of formation + Delta-G solvation = -25.908696 kcal Electronic energy + Delta-G solvation = -29468.248331 eV Core-core repulsion = 25259.756449 eV Total energy + Delta-G solvation = -4208.491881 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -44.00694 -41.15850 -40.46777 -38.77648 -38.03454 -36.86952 -34.44962 -33.97350 -32.76942 -32.49328 -31.08639 -29.97630 -28.96899 -28.02958 -25.70484 -24.69404 -24.30374 -22.86648 -22.12624 -21.77285 -20.99993 -19.96598 -19.14346 -18.92443 -18.28864 -17.58191 -17.36299 -17.19533 -16.93449 -16.64785 -16.16762 -16.02718 -15.85297 -15.42546 -15.22415 -14.92136 -14.70377 -14.56952 -14.46058 -13.97857 -13.86923 -13.64594 -13.44403 -13.27385 -13.01085 -12.92724 -12.68739 -12.63647 -12.22854 -12.20314 -12.10505 -11.88157 -11.63978 -11.51519 -11.09851 -10.88637 -10.76107 -10.54352 -10.22407 -10.10507 -9.68423 -8.89515 -8.19065 -6.33219 -0.34284 0.16455 0.64553 1.06606 1.21815 1.43654 1.44939 1.54710 2.30098 2.32354 2.39603 2.52987 2.62418 3.05587 3.11980 3.50443 3.70114 3.72458 3.85392 4.01318 4.05957 4.25741 4.40639 4.45963 4.46864 4.48342 4.53660 4.55791 4.70183 4.75908 4.82037 4.89714 4.99841 5.06083 5.12264 5.17867 5.23980 5.41629 5.42945 5.49974 5.59347 5.74451 5.83141 5.90441 6.06532 6.34089 6.61344 6.73283 6.78502 6.97365 7.30402 7.48070 8.89392 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.011898 B = 0.002649 C = 0.002239 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2352.685997 B =10568.048543 C =12500.726066 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.112 4.112 3 C 0.277 3.723 4 H 0.006 0.994 5 C -0.551 4.551 6 H 0.067 0.933 7 C 0.019 3.981 8 N -0.914 5.914 9 Si 0.969 3.031 10 H -0.268 1.268 11 H -0.285 1.285 12 H -0.267 1.267 13 N -0.692 5.692 14 C 0.584 3.416 15 O -0.564 6.564 16 C -0.050 4.050 17 N -0.261 5.261 18 N -0.215 5.215 19 C 0.068 3.932 20 C -0.071 4.071 21 C -0.179 4.179 22 C 0.129 3.871 23 O -0.330 6.330 24 C 0.013 3.987 25 C -0.140 4.140 26 C -0.078 4.078 27 C -0.022 4.022 28 C 0.033 3.967 29 O -0.465 6.465 30 H 0.030 0.970 31 H 0.041 0.959 32 H 0.051 0.949 33 H 0.044 0.956 34 H 0.059 0.941 35 H 0.266 0.734 36 H 0.402 0.598 37 H 0.169 0.831 38 H 0.175 0.825 39 H 0.071 0.929 40 H 0.072 0.928 41 H 0.116 0.884 42 H 0.150 0.850 43 H 0.136 0.864 44 H 0.238 0.762 45 H 0.404 0.596 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.871 10.415 29.428 32.452 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.152 4.152 3 C 0.174 3.826 4 H 0.024 0.976 5 C -0.589 4.589 6 H 0.085 0.915 7 C -0.182 4.182 8 N -0.552 5.552 9 Si 0.793 3.207 10 H -0.194 1.194 11 H -0.210 1.210 12 H -0.192 1.192 13 N -0.340 5.340 14 C 0.369 3.631 15 O -0.442 6.442 16 C -0.210 4.210 17 N -0.097 5.097 18 N 0.001 4.999 19 C -0.021 4.021 20 C -0.091 4.091 21 C -0.198 4.198 22 C 0.083 3.917 23 O -0.243 6.243 24 C -0.081 4.081 25 C -0.159 4.159 26 C -0.097 4.097 27 C -0.162 4.162 28 C -0.022 4.022 29 O -0.272 6.272 30 H 0.049 0.951 31 H 0.060 0.940 32 H 0.070 0.930 33 H 0.063 0.937 34 H 0.078 0.922 35 H 0.075 0.925 36 H 0.236 0.764 37 H 0.187 0.813 38 H 0.192 0.808 39 H 0.089 0.911 40 H 0.090 0.910 41 H 0.135 0.865 42 H 0.167 0.833 43 H 0.154 0.846 44 H 0.254 0.746 45 H 0.261 0.739 Dipole moment (debyes) X Y Z Total from point charges -7.913 10.520 28.927 31.781 hybrid contribution 0.109 -0.442 -0.756 0.883 sum -7.803 10.078 28.171 30.920 Atomic orbital electron populations 1.21679 0.96548 0.99502 1.00426 1.21698 0.94257 0.98660 1.00543 1.18481 0.94018 0.89327 0.80805 0.97592 1.21501 0.91263 1.43554 1.02613 0.91509 1.25758 1.03317 0.94582 0.94537 1.70111 1.37427 1.43829 1.03834 0.85408 0.79065 0.78994 0.77188 1.19369 1.21015 1.19162 1.46191 1.14772 1.55254 1.17812 1.17153 0.82448 0.78265 0.85253 1.90757 1.52152 1.61071 1.40233 1.22622 0.96439 1.07659 0.94242 1.73595 1.24180 1.14745 0.97223 1.42470 1.10771 1.36949 1.09663 1.17877 0.96226 1.06465 0.81560 1.20973 1.00613 0.95867 0.91651 1.21404 0.95456 1.05266 0.97699 1.19285 0.92720 0.94302 0.85397 1.86102 1.44469 1.72246 1.21507 1.23453 0.95484 0.96125 0.93026 1.20449 1.01783 1.02138 0.91577 1.20822 0.93575 0.98564 0.96767 1.23412 0.90393 1.07320 0.95122 1.18292 0.89348 1.03972 0.90612 1.84844 1.32568 1.49264 1.60559 0.95120 0.93971 0.93022 0.93678 0.92216 0.92486 0.76398 0.81347 0.80813 0.91063 0.90955 0.86538 0.83260 0.84641 0.74568 0.73883 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.77 8.52 71.98 0.61 -5.16 16 2 C -0.11 -5.74 5.49 30.59 0.17 -5.57 16 3 C 0.28 15.11 2.11 44.25 0.09 15.21 16 4 H 0.01 0.40 7.55 -2.39 -0.02 0.38 16 5 C -0.55 -30.86 8.67 25.60 0.22 -30.64 16 6 H 0.07 3.57 7.73 -2.91 -0.02 3.55 16 7 C 0.02 1.04 5.19 84.65 0.44 1.48 16 8 N -0.91 -54.17 12.00 21.45 0.26 -53.92 16 9 Si 0.97 43.66 29.54 68.60 2.03 45.69 16 10 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 11 H -0.28 -12.66 7.11 99.48 0.71 -11.96 16 12 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 13 N -0.69 -32.73 5.02 -449.35 -2.26 -34.98 16 14 C 0.58 26.93 6.40 86.67 0.55 27.48 16 15 O -0.56 -29.20 13.66 -1.85 -0.03 -29.22 16 16 C -0.05 -1.88 7.13 42.43 0.30 -1.58 16 17 N -0.26 -8.67 10.84 -48.06 -0.52 -9.19 16 18 N -0.22 -5.46 3.52 -186.76 -0.66 -6.12 16 19 C 0.07 1.36 6.66 38.11 0.25 1.62 16 20 C -0.07 -0.84 9.43 22.38 0.21 -0.63 16 21 C -0.18 -1.73 9.03 22.35 0.20 -1.52 16 22 C 0.13 1.80 6.69 22.52 0.15 1.95 16 23 O -0.33 -4.17 10.50 -92.60 -0.97 -5.14 16 24 C 0.01 0.05 9.81 113.37 1.11 1.16 16 25 C -0.14 -2.37 9.98 22.35 0.22 -2.15 16 26 C -0.08 -1.60 9.59 22.38 0.21 -1.39 16 27 C -0.02 -0.47 10.81 83.46 0.90 0.43 16 28 C 0.03 1.02 7.35 22.58 0.17 1.19 16 29 O -0.46 -13.78 13.20 -92.22 -1.22 -15.00 16 30 H 0.03 1.52 7.87 -2.39 -0.02 1.50 16 31 H 0.04 1.92 5.64 -2.39 -0.01 1.90 16 32 H 0.05 2.07 8.14 -2.39 -0.02 2.05 16 33 H 0.04 2.16 8.14 -2.39 -0.02 2.14 16 34 H 0.06 3.33 6.64 -2.39 -0.02 3.31 16 35 H 0.27 14.87 8.31 -92.71 -0.77 14.10 16 36 H 0.40 17.43 8.24 -92.71 -0.76 16.66 16 37 H 0.17 0.88 6.64 -2.91 -0.02 0.86 16 38 H 0.17 0.45 6.29 -2.91 -0.02 0.43 16 39 H 0.07 0.10 7.66 -2.39 -0.02 0.08 16 40 H 0.07 0.09 7.66 -2.39 -0.02 0.07 16 41 H 0.12 0.11 8.14 -2.38 -0.02 0.09 16 42 H 0.15 2.20 8.06 -2.91 -0.02 2.18 16 43 H 0.14 3.16 7.64 -2.91 -0.02 3.14 16 44 H 0.24 2.42 6.96 -2.91 -0.02 2.40 16 45 H 0.40 8.33 9.07 -74.06 -0.67 7.66 16 Total: -1.00 -79.39 378.82 2.09 -77.30 By element: Atomic # 1 Polarization: 29.08 SS G_CDS: -0.37 Total: 28.70 kcal Atomic # 6 Polarization: -3.95 SS G_CDS: 5.83 Total: 1.88 kcal Atomic # 7 Polarization: -101.03 SS G_CDS: -3.18 Total: -104.21 kcal Atomic # 8 Polarization: -47.15 SS G_CDS: -2.21 Total: -49.36 kcal Atomic # 14 Polarization: 43.66 SS G_CDS: 2.03 Total: 45.69 kcal Total: -79.39 2.09 -77.30 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183970098.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.391 kcal (2) G-P(sol) polarization free energy of solvation -79.390 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.999 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.091 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.299 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.909 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds