Wall clock time and date at job start Wed Apr 1 2020 03:43:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52995 * 109.47319 * 2 1 4 4 H 1.08997 * 109.46944 * 305.64106 * 3 2 1 5 5 C 1.50704 * 109.46955 * 185.64023 * 3 2 1 6 6 H 1.07992 * 120.00045 * 335.18931 * 5 3 2 7 7 C 1.37880 * 119.99567 * 155.19135 * 5 3 2 8 8 N 1.31513 * 120.00173 * 355.28690 * 7 5 3 9 9 Si 1.86803 * 119.99755 * 175.28286 * 7 5 3 10 10 H 1.48500 * 109.47046 * 0.02562 * 9 7 5 11 11 H 1.48504 * 109.46902 * 119.99953 * 9 7 5 12 12 H 1.48491 * 109.47247 * 239.99848 * 9 7 5 13 13 O 1.42903 * 109.47141 * 65.63914 * 3 2 1 14 14 C 1.34929 * 116.99962 * 270.00564 * 13 3 2 15 15 O 1.21647 * 120.00487 * 359.97438 * 14 13 3 16 16 C 1.41824 * 119.99728 * 180.02562 * 14 13 3 17 17 N 1.29515 * 125.28817 * 359.68955 * 16 14 13 18 18 N 1.39338 * 113.97528 * 179.81643 * 17 16 14 19 19 C 1.39602 * 125.53523 * 180.17184 * 18 17 16 20 20 C 1.38960 * 120.07802 * 180.02562 * 19 18 17 21 21 C 1.38091 * 119.92182 * 179.72532 * 20 19 18 22 22 C 1.38306 * 120.07573 * 0.54612 * 21 20 19 23 23 C 1.38300 * 120.15913 * 359.72698 * 22 21 20 24 24 C 1.38084 * 120.08135 * 0.02562 * 23 22 21 25 25 C 1.47118 * 108.92749 * 0.45176 * 18 17 16 26 26 H 1.09002 * 110.58701 * 118.30513 * 25 18 17 27 27 C 1.50700 * 110.58560 * 241.21079 * 25 18 17 28 28 N 1.34780 * 120.00362 * 194.26250 * 27 25 18 29 29 O 1.21290 * 119.99930 * 14.25651 * 27 25 18 30 30 C 1.51197 * 125.28305 * 179.97438 * 16 14 13 31 31 H 1.09002 * 109.46817 * 59.99782 * 1 2 3 32 32 H 1.08995 * 109.47296 * 179.97438 * 1 2 3 33 33 H 1.09001 * 109.46938 * 299.99834 * 1 2 3 34 34 H 1.09001 * 109.46933 * 239.99608 * 2 1 3 35 35 H 1.09002 * 109.46817 * 120.00218 * 2 1 3 36 36 H 0.96997 * 119.99959 * 5.24389 * 8 7 5 37 37 H 1.08005 * 120.04331 * 359.97438 * 20 19 18 38 38 H 1.07997 * 119.96148 * 180.25466 * 21 20 19 39 39 H 1.07996 * 119.91994 * 179.74669 * 22 21 20 40 40 H 1.07997 * 119.96131 * 180.02562 * 23 22 21 41 41 H 1.08000 * 120.04128 * 180.02562 * 24 23 22 42 42 H 0.96998 * 119.99444 * 359.97438 * 28 27 25 43 43 H 0.96998 * 119.99802 * 179.97438 * 28 27 25 44 44 H 1.09002 * 110.52573 * 298.61814 * 30 16 14 45 45 H 1.08989 * 110.52926 * 61.37257 * 30 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.5966 1.9846 -0.8352 5 6 3.5406 1.4446 -0.1396 6 1 4.1133 0.5841 0.1731 7 6 4.1823 2.5454 -0.6666 8 7 3.4803 3.5551 -1.1328 9 14 6.0487 2.6025 -0.7184 10 1 6.5985 1.3515 -0.1371 11 1 6.5010 2.7340 -2.1267 12 1 6.5302 3.7672 0.0669 13 8 1.6749 2.0768 1.2273 14 6 0.4858 2.7137 1.2576 15 8 -0.2210 2.7298 0.2677 16 6 0.0605 3.3654 2.4432 17 7 0.7262 3.4086 3.5533 18 7 0.0881 4.1176 4.5690 19 6 0.5886 4.3177 5.8568 20 6 -0.1466 5.0459 6.7843 21 6 0.3489 5.2370 8.0590 22 6 1.5805 4.7143 8.4095 23 6 2.3175 3.9939 7.4872 24 6 1.8260 3.7945 6.2124 25 6 -1.2017 4.6153 4.0660 26 1 -2.0259 4.1934 4.6411 27 6 -1.2412 6.1212 4.1075 28 7 -2.4149 6.7687 3.9675 29 8 -0.2166 6.7505 4.2669 30 6 -1.2435 4.1125 2.6095 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0276 -0.0005 33 1 -0.3633 0.5138 0.8900 34 1 1.8933 -0.5139 -0.8900 35 1 1.8933 -0.5139 0.8900 36 1 2.5150 3.5598 -1.0372 37 1 -1.1063 5.4584 6.5099 38 1 -0.2237 5.7993 8.7816 39 1 1.9675 4.8688 9.4058 40 1 3.2787 3.5869 7.7645 41 1 2.4019 3.2315 5.4928 42 1 -3.2342 6.2654 3.8397 43 1 -2.4403 7.7380 3.9946 44 1 -1.2938 4.9523 1.9164 45 1 -2.0898 3.4420 2.4610 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000188025399.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:43:26 Heat of formation + Delta-G solvation = -39.574123 kcal Electronic energy + Delta-G solvation = -30643.485464 eV Core-core repulsion = 26434.401005 eV Total energy + Delta-G solvation = -4209.084459 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.24068 -39.71647 -38.99142 -38.26555 -35.95234 -34.12513 -33.58480 -33.13256 -32.05040 -31.44937 -30.66557 -29.13831 -27.05133 -24.88611 -24.65817 -23.11802 -22.59344 -21.82906 -20.58636 -20.42745 -19.26398 -18.31826 -17.75981 -17.42288 -17.29004 -16.75721 -16.11582 -15.69867 -15.48486 -15.26645 -14.89500 -14.68141 -14.20643 -13.83254 -13.77468 -13.44079 -13.37938 -13.30596 -13.29681 -13.10013 -12.64072 -12.39446 -11.97927 -11.94791 -11.59219 -11.34562 -11.17777 -10.90027 -10.89422 -10.75709 -10.60149 -10.38766 -10.18444 -10.11867 -10.05861 -9.95142 -9.65977 -9.20978 -8.97270 -8.72873 -8.45039 -7.53234 -6.61245 -4.41364 0.93213 1.38474 1.69675 2.03664 2.27511 3.05498 3.34205 3.40194 3.48691 3.56270 3.61486 3.82200 3.85640 4.18113 4.39036 4.46627 4.55776 4.85348 4.89925 5.00590 5.13334 5.25708 5.35497 5.37925 5.42589 5.56376 5.64192 5.83949 5.87070 5.97475 6.02864 6.13986 6.35283 6.39428 6.43809 6.53233 6.55414 6.65013 6.69848 6.74741 6.82522 6.88226 7.09429 7.17314 7.50788 7.63452 7.87594 7.90850 8.23400 8.58942 8.76094 9.37778 10.75123 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.010354 B = 0.003547 C = 0.003140 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2703.542490 B = 7892.771648 C = 8914.726642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.125 4.125 3 C 0.182 3.818 4 H 0.053 0.947 5 C -0.586 4.586 6 H 0.064 0.936 7 C 0.031 3.969 8 N -0.881 5.881 9 Si 1.079 2.921 10 H -0.284 1.284 11 H -0.283 1.283 12 H -0.283 1.283 13 O -0.329 6.329 14 C 0.526 3.474 15 O -0.512 6.512 16 C 0.037 3.963 17 N -0.129 5.129 18 N -0.445 5.445 19 C 0.232 3.768 20 C -0.167 4.167 21 C -0.084 4.084 22 C -0.161 4.161 23 C -0.082 4.082 24 C -0.151 4.151 25 C 0.089 3.911 26 H 0.117 0.883 27 C 0.506 3.494 28 N -0.851 5.851 29 O -0.509 6.509 30 C -0.095 4.095 31 H 0.056 0.944 32 H 0.039 0.961 33 H 0.041 0.959 34 H 0.069 0.931 35 H 0.055 0.945 36 H 0.275 0.725 37 H 0.112 0.888 38 H 0.123 0.877 39 H 0.121 0.879 40 H 0.127 0.873 41 H 0.137 0.863 42 H 0.403 0.597 43 H 0.406 0.594 44 H 0.109 0.891 45 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.818 2.918 15.460 20.940 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.163 4.163 3 C 0.131 3.869 4 H 0.071 0.929 5 C -0.622 4.622 6 H 0.082 0.918 7 C -0.178 4.178 8 N -0.515 5.515 9 Si 0.906 3.094 10 H -0.210 1.210 11 H -0.209 1.209 12 H -0.209 1.209 13 O -0.243 6.243 14 C 0.368 3.632 15 O -0.400 6.400 16 C -0.155 4.155 17 N 0.058 4.942 18 N -0.247 5.247 19 C 0.136 3.864 20 C -0.189 4.189 21 C -0.103 4.103 22 C -0.181 4.181 23 C -0.101 4.101 24 C -0.172 4.172 25 C -0.020 4.020 26 H 0.134 0.866 27 C 0.287 3.713 28 N -0.417 5.417 29 O -0.382 6.382 30 C -0.136 4.136 31 H 0.075 0.925 32 H 0.058 0.942 33 H 0.060 0.940 34 H 0.088 0.912 35 H 0.074 0.926 36 H 0.086 0.914 37 H 0.130 0.870 38 H 0.141 0.859 39 H 0.139 0.861 40 H 0.145 0.855 41 H 0.155 0.845 42 H 0.231 0.769 43 H 0.237 0.763 44 H 0.127 0.873 45 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -11.104 3.742 15.196 19.189 hybrid contribution -2.688 -0.246 0.104 2.701 sum -13.791 3.496 15.300 20.893 Atomic orbital electron populations 1.21878 0.97194 0.99625 1.01699 1.21874 0.94104 0.98675 1.01673 1.20613 0.95815 0.88591 0.81901 0.92923 1.22090 0.90225 1.04542 1.45373 0.91786 1.26194 1.07784 0.92103 0.91762 1.70728 1.09506 1.32241 1.39003 0.83417 0.73059 0.76041 0.76920 1.20971 1.20920 1.20892 1.86863 1.31565 1.61001 1.44870 1.18403 0.82333 0.77426 0.84989 1.90830 1.55320 1.59270 1.34623 1.22958 0.95888 1.03335 0.93310 1.75201 1.18886 1.03739 0.96423 1.48098 1.16070 1.51957 1.08567 1.17233 0.93494 0.95639 0.80010 1.20455 1.00930 1.03633 0.93878 1.20787 0.95904 0.98610 0.94972 1.21010 0.95695 1.01438 0.99912 1.20989 0.99402 0.97237 0.92471 1.20899 0.94858 1.03597 0.97813 1.22306 0.89978 0.92558 0.97185 0.86595 1.20705 0.84078 0.90052 0.76441 1.43781 1.09360 1.11451 1.77093 1.90855 1.32923 1.68051 1.46388 1.21884 0.97328 1.01383 0.92960 0.92453 0.94199 0.93969 0.91224 0.92636 0.91376 0.86962 0.85927 0.86140 0.85538 0.84532 0.76882 0.76279 0.87293 0.86322 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.82 8.56 37.16 0.32 -2.50 16 2 C -0.13 -2.74 5.62 -26.73 -0.15 -2.89 16 3 C 0.18 4.73 1.93 -27.88 -0.05 4.68 16 4 H 0.05 1.49 5.65 -51.93 -0.29 1.19 16 5 C -0.59 -16.45 8.69 -34.44 -0.30 -16.75 16 6 H 0.06 1.76 7.81 -52.49 -0.41 1.35 16 7 C 0.03 0.87 5.46 -17.82 -0.10 0.77 16 8 N -0.88 -26.70 13.63 55.43 0.76 -25.94 16 9 Si 1.08 25.00 29.91 -169.99 -5.08 19.92 16 10 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 11 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 12 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 13 O -0.33 -8.35 9.61 -41.12 -0.40 -8.74 16 14 C 0.53 11.71 6.17 32.10 0.20 11.91 16 15 O -0.51 -11.65 13.96 -19.38 -0.27 -11.92 16 16 C 0.04 0.69 7.09 -81.96 -0.58 0.11 16 17 N -0.13 -2.47 11.25 33.99 0.38 -2.08 16 18 N -0.45 -7.12 3.53 -52.30 -0.18 -7.30 16 19 C 0.23 3.57 6.22 -83.78 -0.52 3.05 16 20 C -0.17 -2.13 8.69 -39.37 -0.34 -2.48 16 21 C -0.08 -0.93 10.04 -39.61 -0.40 -1.33 16 22 C -0.16 -1.77 10.04 -39.53 -0.40 -2.17 16 23 C -0.08 -1.02 10.04 -39.62 -0.40 -1.42 16 24 C -0.15 -2.30 9.64 -39.37 -0.38 -2.68 16 25 C 0.09 1.06 3.22 -68.15 -0.22 0.85 16 26 H 0.12 0.92 8.14 -51.93 -0.42 0.50 16 27 C 0.51 6.14 5.60 -10.98 -0.06 6.08 16 28 N -0.85 -5.76 8.87 31.22 0.28 -5.48 16 29 O -0.51 -8.86 16.54 5.55 0.09 -8.77 16 30 C -0.10 -1.24 6.31 -27.04 -0.17 -1.41 16 31 H 0.06 1.13 7.79 -51.93 -0.40 0.73 16 32 H 0.04 0.65 8.14 -51.93 -0.42 0.22 16 33 H 0.04 0.82 6.04 -51.93 -0.31 0.50 16 34 H 0.07 1.47 8.14 -51.93 -0.42 1.05 16 35 H 0.05 1.18 8.14 -51.93 -0.42 0.76 16 36 H 0.27 8.48 6.66 -40.82 -0.27 8.21 16 37 H 0.11 1.25 6.37 -52.48 -0.33 0.92 16 38 H 0.12 1.01 8.06 -52.49 -0.42 0.59 16 39 H 0.12 1.01 8.06 -52.49 -0.42 0.58 16 40 H 0.13 1.29 8.06 -52.49 -0.42 0.87 16 41 H 0.14 2.27 7.66 -52.49 -0.40 1.86 16 42 H 0.40 1.29 8.83 -40.82 -0.36 0.93 16 43 H 0.41 2.40 8.93 -40.82 -0.36 2.04 16 44 H 0.11 1.39 7.72 -51.93 -0.40 0.99 16 45 H 0.12 1.15 8.14 -51.94 -0.42 0.73 16 LS Contribution 380.26 15.07 5.73 5.73 Total: -1.00 -36.64 380.26 -7.98 -44.62 By element: Atomic # 1 Polarization: 11.91 SS G_CDS: -5.73 Total: 6.17 kcal Atomic # 6 Polarization: -2.64 SS G_CDS: -3.55 Total: -6.20 kcal Atomic # 7 Polarization: -42.04 SS G_CDS: 1.23 Total: -40.81 kcal Atomic # 8 Polarization: -28.86 SS G_CDS: -0.57 Total: -29.44 kcal Atomic # 14 Polarization: 25.00 SS G_CDS: -5.08 Total: 19.92 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -36.64 -7.98 -44.62 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000188025399.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.047 kcal (2) G-P(sol) polarization free energy of solvation -36.639 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.592 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.982 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.621 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.574 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds