Wall clock time and date at job start Wed Apr 1 2020 03:43:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52995 * 109.47319 * 2 1 4 4 H 1.08997 * 109.46944 * 305.64106 * 3 2 1 5 5 C 1.50704 * 109.46955 * 185.64023 * 3 2 1 6 6 H 1.07992 * 120.00045 * 335.18931 * 5 3 2 7 7 C 1.37880 * 119.99567 * 155.19135 * 5 3 2 8 8 N 1.31513 * 120.00173 * 355.28690 * 7 5 3 9 9 Si 1.86803 * 119.99755 * 175.28286 * 7 5 3 10 10 H 1.48500 * 109.47046 * 0.02562 * 9 7 5 11 11 H 1.48504 * 109.46902 * 119.99953 * 9 7 5 12 12 H 1.48491 * 109.47247 * 239.99848 * 9 7 5 13 13 O 1.42903 * 109.47141 * 65.63914 * 3 2 1 14 14 C 1.34929 * 116.99962 * 270.00564 * 13 3 2 15 15 O 1.21647 * 120.00487 * 359.97438 * 14 13 3 16 16 C 1.41824 * 119.99728 * 180.02562 * 14 13 3 17 17 N 1.29515 * 125.28817 * 359.68955 * 16 14 13 18 18 N 1.39338 * 113.97528 * 179.81643 * 17 16 14 19 19 C 1.39602 * 125.53523 * 180.17184 * 18 17 16 20 20 C 1.38960 * 120.07802 * 180.02562 * 19 18 17 21 21 C 1.38091 * 119.92182 * 179.72532 * 20 19 18 22 22 C 1.38306 * 120.07573 * 0.54612 * 21 20 19 23 23 C 1.38300 * 120.15913 * 359.72698 * 22 21 20 24 24 C 1.38084 * 120.08135 * 0.02562 * 23 22 21 25 25 C 1.47118 * 108.92749 * 0.45176 * 18 17 16 26 26 H 1.09002 * 110.58701 * 118.30513 * 25 18 17 27 27 C 1.50700 * 110.58560 * 241.21079 * 25 18 17 28 28 N 1.34780 * 120.00362 * 194.26250 * 27 25 18 29 29 O 1.21290 * 119.99930 * 14.25651 * 27 25 18 30 30 C 1.51197 * 125.28305 * 179.97438 * 16 14 13 31 31 H 1.09002 * 109.46817 * 59.99782 * 1 2 3 32 32 H 1.08995 * 109.47296 * 179.97438 * 1 2 3 33 33 H 1.09001 * 109.46938 * 299.99834 * 1 2 3 34 34 H 1.09001 * 109.46933 * 239.99608 * 2 1 3 35 35 H 1.09002 * 109.46817 * 120.00218 * 2 1 3 36 36 H 0.96997 * 119.99959 * 5.24389 * 8 7 5 37 37 H 1.08005 * 120.04331 * 359.97438 * 20 19 18 38 38 H 1.07997 * 119.96148 * 180.25466 * 21 20 19 39 39 H 1.07996 * 119.91994 * 179.74669 * 22 21 20 40 40 H 1.07997 * 119.96131 * 180.02562 * 23 22 21 41 41 H 1.08000 * 120.04128 * 180.02562 * 24 23 22 42 42 H 0.96998 * 119.99444 * 359.97438 * 28 27 25 43 43 H 0.96998 * 119.99802 * 179.97438 * 28 27 25 44 44 H 1.09002 * 110.52573 * 298.61814 * 30 16 14 45 45 H 1.08989 * 110.52926 * 61.37257 * 30 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.5966 1.9846 -0.8352 5 6 3.5406 1.4446 -0.1396 6 1 4.1133 0.5841 0.1731 7 6 4.1823 2.5454 -0.6666 8 7 3.4803 3.5551 -1.1328 9 14 6.0487 2.6025 -0.7184 10 1 6.5985 1.3515 -0.1371 11 1 6.5010 2.7340 -2.1267 12 1 6.5302 3.7672 0.0669 13 8 1.6749 2.0768 1.2273 14 6 0.4858 2.7137 1.2576 15 8 -0.2210 2.7298 0.2677 16 6 0.0605 3.3654 2.4432 17 7 0.7262 3.4086 3.5533 18 7 0.0881 4.1176 4.5690 19 6 0.5886 4.3177 5.8568 20 6 -0.1466 5.0459 6.7843 21 6 0.3489 5.2370 8.0590 22 6 1.5805 4.7143 8.4095 23 6 2.3175 3.9939 7.4872 24 6 1.8260 3.7945 6.2124 25 6 -1.2017 4.6153 4.0660 26 1 -2.0259 4.1934 4.6411 27 6 -1.2412 6.1212 4.1075 28 7 -2.4149 6.7687 3.9675 29 8 -0.2166 6.7505 4.2669 30 6 -1.2435 4.1125 2.6095 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0276 -0.0005 33 1 -0.3633 0.5138 0.8900 34 1 1.8933 -0.5139 -0.8900 35 1 1.8933 -0.5139 0.8900 36 1 2.5150 3.5598 -1.0372 37 1 -1.1063 5.4584 6.5099 38 1 -0.2237 5.7993 8.7816 39 1 1.9675 4.8688 9.4058 40 1 3.2787 3.5869 7.7645 41 1 2.4019 3.2315 5.4928 42 1 -3.2342 6.2654 3.8397 43 1 -2.4403 7.7380 3.9946 44 1 -1.2938 4.9523 1.9164 45 1 -2.0898 3.4420 2.4610 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000188025399.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:43:25 Heat of formation + Delta-G solvation = -66.092873 kcal Electronic energy + Delta-G solvation = -30644.635403 eV Core-core repulsion = 26434.401005 eV Total energy + Delta-G solvation = -4210.234398 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.42205 -41.39360 -39.96902 -39.45401 -37.81171 -35.42076 -34.98737 -34.52069 -33.88716 -32.47597 -31.66739 -30.29211 -28.95952 -26.35194 -25.79699 -25.01642 -23.60160 -22.95248 -22.19093 -21.55698 -20.85758 -19.45802 -19.29006 -18.83896 -18.62908 -17.77064 -17.35571 -17.27183 -17.00985 -16.37208 -15.98080 -15.80774 -15.68425 -15.38534 -15.26803 -14.99177 -14.72590 -14.59053 -14.41295 -14.31188 -14.03205 -13.73820 -13.46584 -13.12841 -13.07904 -12.81813 -12.67980 -12.63629 -12.51643 -12.19310 -11.98399 -11.93499 -11.81383 -11.66457 -11.48395 -11.24504 -10.83348 -10.79160 -10.71409 -10.52324 -9.94655 -8.87206 -8.62524 -6.68235 -0.45089 0.41129 0.60369 0.91595 1.30709 1.47822 1.55298 1.75413 1.84023 1.97499 2.31142 2.46689 2.71295 2.87836 3.04089 3.16513 3.66003 3.71891 3.83634 3.92834 3.98084 4.13604 4.19268 4.22725 4.27392 4.36511 4.41378 4.45856 4.50762 4.58390 4.65004 4.75701 4.95710 5.00046 5.06275 5.08986 5.31001 5.33297 5.44128 5.59719 5.63419 5.70017 5.76540 5.83449 6.00259 6.10084 6.28213 6.30134 6.32781 6.91418 7.14477 7.20546 8.48233 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.010354 B = 0.003547 C = 0.003140 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2703.542490 B = 7892.771648 C = 8914.726642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.121 4.121 3 C 0.182 3.818 4 H 0.021 0.979 5 C -0.606 4.606 6 H 0.065 0.935 7 C -0.019 4.019 8 N -0.911 5.911 9 Si 1.125 2.875 10 H -0.262 1.262 11 H -0.269 1.269 12 H -0.283 1.283 13 O -0.352 6.352 14 C 0.525 3.475 15 O -0.524 6.524 16 C 0.006 3.994 17 N -0.157 5.157 18 N -0.443 5.443 19 C 0.199 3.801 20 C -0.165 4.165 21 C -0.081 4.081 22 C -0.153 4.153 23 C -0.088 4.088 24 C -0.183 4.183 25 C 0.089 3.911 26 H 0.167 0.833 27 C 0.507 3.493 28 N -0.819 5.819 29 O -0.571 6.571 30 C -0.086 4.086 31 H 0.046 0.954 32 H 0.076 0.924 33 H 0.035 0.965 34 H 0.074 0.926 35 H 0.059 0.941 36 H 0.256 0.744 37 H 0.130 0.870 38 H 0.160 0.840 39 H 0.155 0.845 40 H 0.143 0.857 41 H 0.107 0.893 42 H 0.424 0.576 43 H 0.414 0.586 44 H 0.107 0.893 45 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.751 3.221 18.251 24.322 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.159 4.159 3 C 0.129 3.871 4 H 0.039 0.961 5 C -0.642 4.642 6 H 0.084 0.916 7 C -0.221 4.221 8 N -0.547 5.547 9 Si 0.944 3.056 10 H -0.186 1.186 11 H -0.194 1.194 12 H -0.209 1.209 13 O -0.266 6.266 14 C 0.369 3.631 15 O -0.412 6.412 16 C -0.184 4.184 17 N 0.027 4.973 18 N -0.246 5.246 19 C 0.104 3.896 20 C -0.187 4.187 21 C -0.099 4.099 22 C -0.172 4.172 23 C -0.107 4.107 24 C -0.204 4.204 25 C -0.019 4.019 26 H 0.184 0.816 27 C 0.288 3.712 28 N -0.386 5.386 29 O -0.448 6.448 30 C -0.125 4.125 31 H 0.065 0.935 32 H 0.095 0.905 33 H 0.054 0.946 34 H 0.093 0.907 35 H 0.078 0.922 36 H 0.066 0.934 37 H 0.148 0.852 38 H 0.178 0.822 39 H 0.172 0.828 40 H 0.161 0.839 41 H 0.125 0.875 42 H 0.257 0.743 43 H 0.247 0.753 44 H 0.125 0.875 45 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -13.139 4.035 17.985 22.636 hybrid contribution -2.178 -0.297 -0.546 2.265 sum -15.318 3.738 17.439 23.510 Atomic orbital electron populations 1.21759 0.94948 1.01698 1.00857 1.21813 0.96124 0.95917 1.02051 1.20470 0.95036 0.90470 0.81084 0.96074 1.22436 0.91640 1.04657 1.45442 0.91636 1.27709 1.11932 0.91551 0.90862 1.70872 1.08435 1.33653 1.41754 0.82884 0.67977 0.76922 0.77824 1.18574 1.19385 1.20910 1.86717 1.33808 1.62161 1.43956 1.18733 0.81114 0.76932 0.86308 1.90798 1.55286 1.59648 1.35458 1.22697 0.98731 1.05058 0.91940 1.75058 1.20418 1.04356 0.97441 1.48231 1.17045 1.51268 1.08057 1.17620 0.94289 0.97347 0.80331 1.20744 1.01392 1.02592 0.93974 1.21292 0.96009 0.97779 0.94826 1.21446 0.95331 0.99601 1.00847 1.21259 1.00353 0.97399 0.91666 1.20917 0.95603 1.05058 0.98818 1.22696 0.89570 0.92761 0.96876 0.81641 1.20755 0.84449 0.90020 0.75947 1.43533 1.08658 1.12026 1.74341 1.90840 1.35262 1.69018 1.49722 1.22008 0.95590 1.01284 0.93642 0.93510 0.90544 0.94564 0.90694 0.92217 0.93383 0.85180 0.82228 0.82755 0.83909 0.87530 0.74346 0.75301 0.87472 0.82658 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.18 8.56 71.98 0.62 -4.56 16 2 C -0.12 -5.41 5.62 30.59 0.17 -5.24 16 3 C 0.18 9.89 1.93 29.85 0.06 9.95 16 4 H 0.02 1.28 5.65 -2.39 -0.01 1.27 16 5 C -0.61 -35.32 8.69 25.60 0.22 -35.10 16 6 H 0.07 3.69 7.81 -2.91 -0.02 3.67 16 7 C -0.02 -1.13 5.46 84.66 0.46 -0.66 16 8 N -0.91 -58.00 13.63 21.45 0.29 -57.71 16 9 Si 1.12 51.30 29.91 68.60 2.05 53.35 16 10 H -0.26 -10.85 7.11 99.48 0.71 -10.14 16 11 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 12 H -0.28 -12.83 7.11 99.48 0.71 -12.13 16 13 O -0.35 -18.87 9.61 -58.44 -0.56 -19.43 16 14 C 0.53 24.54 6.17 68.71 0.42 24.96 16 15 O -0.52 -24.83 13.96 19.35 0.27 -24.56 16 16 C 0.01 0.21 7.09 43.95 0.31 0.52 16 17 N -0.16 -6.26 11.25 -46.37 -0.52 -6.78 16 18 N -0.44 -14.16 3.53 -319.38 -1.13 -15.29 16 19 C 0.20 6.08 6.22 38.25 0.24 6.32 16 20 C -0.16 -3.85 8.69 22.41 0.19 -3.65 16 21 C -0.08 -1.50 10.04 22.25 0.22 -1.28 16 22 C -0.15 -2.91 10.04 22.30 0.22 -2.69 16 23 C -0.09 -2.13 10.04 22.25 0.22 -1.91 16 24 C -0.18 -5.80 9.64 22.41 0.22 -5.58 16 25 C 0.09 1.95 3.22 44.51 0.14 2.09 16 26 H 0.17 1.94 8.14 -2.39 -0.02 1.92 16 27 C 0.51 11.36 5.60 87.66 0.49 11.85 16 28 N -0.82 -8.51 8.87 -173.52 -1.54 -10.05 16 29 O -0.57 -19.70 16.54 -3.06 -0.05 -19.75 16 30 C -0.09 -2.13 6.31 30.39 0.19 -1.93 16 31 H 0.05 1.86 7.79 -2.39 -0.02 1.85 16 32 H 0.08 2.35 8.14 -2.39 -0.02 2.33 16 33 H 0.04 1.40 6.04 -2.39 -0.01 1.39 16 34 H 0.07 3.20 8.14 -2.39 -0.02 3.19 16 35 H 0.06 2.58 8.14 -2.39 -0.02 2.56 16 36 H 0.26 16.88 6.66 -92.71 -0.62 16.26 16 37 H 0.13 2.47 6.37 -2.91 -0.02 2.45 16 38 H 0.16 1.78 8.06 -2.91 -0.02 1.76 16 39 H 0.15 1.88 8.06 -2.91 -0.02 1.86 16 40 H 0.14 2.81 8.06 -2.91 -0.02 2.79 16 41 H 0.11 3.91 7.66 -2.91 -0.02 3.88 16 42 H 0.42 0.93 8.83 -92.71 -0.82 0.11 16 43 H 0.41 3.71 8.93 -92.71 -0.83 2.88 16 44 H 0.11 2.67 7.72 -2.39 -0.02 2.65 16 45 H 0.16 2.60 8.14 -2.39 -0.02 2.58 16 Total: -1.00 -87.64 380.26 2.79 -84.86 By element: Atomic # 1 Polarization: 22.70 SS G_CDS: -0.44 Total: 22.26 kcal Atomic # 6 Polarization: -11.31 SS G_CDS: 4.41 Total: -6.90 kcal Atomic # 7 Polarization: -86.93 SS G_CDS: -2.90 Total: -89.82 kcal Atomic # 8 Polarization: -63.40 SS G_CDS: -0.34 Total: -63.75 kcal Atomic # 14 Polarization: 51.30 SS G_CDS: 2.05 Total: 53.35 kcal Total: -87.64 2.79 -84.86 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000188025399.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.766 kcal (2) G-P(sol) polarization free energy of solvation -87.644 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.878 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.785 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.859 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.093 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds