Wall clock time and date at job start Wed Apr 1 2020 03:43:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 109.47402 * 2 1 4 4 H 1.08998 * 109.47014 * 54.99764 * 3 2 1 5 5 C 1.50708 * 109.46980 * 174.99864 * 3 2 1 6 6 H 1.07997 * 119.99644 * 120.00073 * 5 3 2 7 7 C 1.37880 * 119.99718 * 299.99974 * 5 3 2 8 8 N 1.31509 * 120.00148 * 359.97438 * 7 5 3 9 9 Si 1.86797 * 119.99573 * 180.02562 * 7 5 3 10 10 H 1.48504 * 109.47327 * 359.97438 * 9 7 5 11 11 H 1.48493 * 109.47259 * 119.99773 * 9 7 5 12 12 H 1.48504 * 109.46969 * 239.99876 * 9 7 5 13 13 O 1.45197 * 109.47074 * 294.99544 * 3 2 1 14 14 C 1.34755 * 116.99812 * 90.00283 * 13 3 2 15 15 O 1.21522 * 120.00209 * 359.97438 * 14 13 3 16 16 C 1.47370 * 120.00209 * 180.02562 * 14 13 3 17 17 N 1.34441 * 125.77349 * 359.68557 * 16 14 13 18 18 N 1.28759 * 109.56210 * 179.85562 * 17 16 14 19 19 N 1.40208 * 108.40501 * 0.40913 * 18 17 16 20 20 C 1.40308 * 126.60022 * 179.74976 * 19 18 17 21 21 C 1.38827 * 120.01420 * 41.75295 * 20 19 18 22 22 C 1.38060 * 119.99140 * 179.77162 * 21 20 19 23 23 C 1.38745 * 120.00730 * 0.52671 * 22 21 20 24 24 O 1.35930 * 119.98896 * 179.72757 * 23 22 21 25 25 C 1.42900 * 116.99879 * 359.97438 * 24 23 22 26 26 C 1.38748 * 120.02423 * 359.70219 * 23 22 21 27 27 C 1.38064 * 120.00839 * 0.04615 * 26 23 22 28 28 C 1.35018 * 106.79367 * 359.74897 * 19 18 17 29 29 C 1.50697 * 126.59965 * 179.97438 * 28 19 18 30 30 H 1.08999 * 109.47187 * 300.00765 * 1 2 3 31 31 H 1.08996 * 109.47668 * 179.97438 * 1 2 3 32 32 H 1.09008 * 109.46886 * 59.99606 * 1 2 3 33 33 H 1.09000 * 109.46581 * 120.00393 * 2 1 3 34 34 H 1.08999 * 109.47187 * 239.99235 * 2 1 3 35 35 H 0.97004 * 119.99791 * 179.97438 * 8 7 5 36 36 H 1.08003 * 120.00263 * 0.02562 * 21 20 19 37 37 H 1.08001 * 119.99717 * 180.23077 * 22 21 20 38 38 H 1.09004 * 109.47320 * 180.02562 * 25 24 23 39 39 H 1.09002 * 109.47537 * 299.99900 * 25 24 23 40 40 H 1.08996 * 109.47424 * 60.00006 * 25 24 23 41 41 H 1.07994 * 119.99558 * 180.02562 * 26 23 22 42 42 H 1.07993 * 120.00536 * 179.97438 * 27 26 23 43 43 H 1.08999 * 109.47253 * 264.67979 * 29 28 19 44 44 H 1.08994 * 109.47620 * 24.68580 * 29 28 19 45 45 H 1.09006 * 109.46749 * 144.68441 * 29 28 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5420 1.4441 0.1239 6 1 4.1473 1.8887 -0.6523 7 6 4.1433 0.8782 1.2281 8 7 3.4061 0.3373 2.1734 9 14 6.0049 0.8809 1.3819 10 1 6.5988 1.5459 0.1943 11 1 6.3990 1.6164 2.6103 12 1 6.4969 -0.5179 1.4631 13 8 1.6560 2.0916 -1.2407 14 6 0.4683 2.7279 -1.2561 15 8 -0.2277 2.7396 -0.2600 16 6 0.0128 3.4087 -2.4812 17 7 0.6881 3.4730 -3.6419 18 7 0.0021 4.1400 -4.5034 19 7 -1.1906 4.5548 -3.8941 20 6 -2.2138 5.3105 -4.4863 21 6 -2.6135 5.0389 -5.7878 22 6 -3.6235 5.7797 -6.3684 23 6 -4.2315 6.8028 -5.6552 24 8 -5.2221 7.5356 -6.2291 25 6 -5.5857 7.1978 -7.5692 26 6 -3.8292 7.0778 -4.3561 27 6 -2.8228 6.3341 -3.7728 28 6 -1.1650 4.0869 -2.6279 29 6 -2.2297 4.2764 -1.5783 30 1 -0.3633 0.5139 0.8899 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3633 0.5139 -0.8900 33 1 1.8932 -0.5139 0.8900 34 1 1.8933 -0.5139 -0.8899 35 1 3.8292 -0.0612 2.9500 36 1 -2.1371 4.2454 -6.3445 37 1 -3.9370 5.5661 -7.3795 38 1 -6.3852 7.8578 -7.9061 39 1 -4.7199 7.3145 -8.2210 40 1 -5.9291 6.1639 -7.6029 41 1 -4.3031 7.8739 -3.8012 42 1 -2.5094 6.5485 -2.7619 43 1 -1.9763 5.1333 -0.9542 44 1 -3.1904 4.4510 -2.0626 45 1 -2.2924 3.3816 -0.9588 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000188078424.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:43:09 Heat of formation + Delta-G solvation = 1.233016 kcal Electronic energy + Delta-G solvation = -29492.709183 eV Core-core repulsion = 25285.394254 eV Total energy + Delta-G solvation = -4207.314928 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.46492 -40.65963 -39.33302 -38.21024 -35.82051 -34.57811 -33.41645 -32.60852 -31.63512 -31.29173 -29.73468 -28.28372 -27.64130 -27.12929 -24.19356 -23.94164 -23.15486 -22.70729 -21.19621 -20.41935 -19.57779 -18.79928 -18.28620 -17.03102 -16.71446 -16.38574 -16.28951 -16.01492 -15.50990 -15.14766 -14.97630 -14.54441 -14.43956 -14.29183 -14.10325 -13.67267 -13.36770 -13.17761 -13.04435 -12.80618 -12.77550 -12.51799 -12.19197 -12.03332 -11.83524 -11.54629 -11.43941 -11.28167 -11.14021 -11.09776 -10.92429 -10.60575 -10.60062 -10.22491 -9.84405 -9.69386 -9.66904 -9.34021 -9.19710 -8.75185 -8.56585 -8.40806 -6.13928 -4.19686 0.32931 0.67780 1.31356 1.83640 1.84865 2.66374 3.03901 3.28070 3.34702 3.39866 3.56327 3.57530 4.11496 4.15824 4.21042 4.37259 4.44891 4.54036 4.59401 4.60413 4.70157 4.86366 4.92887 4.98381 5.17959 5.24105 5.30387 5.35013 5.38959 5.53773 5.66118 5.79365 5.84206 5.93358 6.07763 6.26478 6.34154 6.49241 6.51121 6.76088 6.90869 6.98210 7.20097 7.25269 7.65869 7.77450 7.90457 8.01210 8.20068 8.65238 8.94154 9.45047 10.93051 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.028072 B = 0.002093 C = 0.002045 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 997.188855 B =13375.339538 C =13690.064969 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.136 4.136 3 C 0.221 3.779 4 H 0.050 0.950 5 C -0.518 4.518 6 H 0.071 0.929 7 C 0.062 3.938 8 N -0.889 5.889 9 Si 0.910 3.090 10 H -0.270 1.270 11 H -0.282 1.282 12 H -0.282 1.282 13 O -0.333 6.333 14 C 0.544 3.456 15 O -0.510 6.510 16 C -0.072 4.072 17 N -0.169 5.169 18 N -0.068 5.068 19 N -0.318 5.318 20 C 0.094 3.906 21 C -0.054 4.054 22 C -0.193 4.193 23 C 0.138 3.862 24 O -0.313 6.313 25 C 0.024 3.976 26 C -0.133 4.133 27 C -0.072 4.072 28 C 0.126 3.874 29 C -0.097 4.097 30 H 0.054 0.946 31 H 0.033 0.967 32 H 0.031 0.969 33 H 0.110 0.890 34 H 0.043 0.957 35 H 0.265 0.735 36 H 0.141 0.859 37 H 0.141 0.859 38 H 0.103 0.897 39 H 0.059 0.941 40 H 0.059 0.941 41 H 0.146 0.854 42 H 0.144 0.856 43 H 0.096 0.904 44 H 0.077 0.923 45 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.407 13.045 -15.969 29.011 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.174 4.174 3 C 0.168 3.832 4 H 0.067 0.933 5 C -0.556 4.556 6 H 0.089 0.911 7 C -0.140 4.140 8 N -0.527 5.527 9 Si 0.737 3.263 10 H -0.194 1.194 11 H -0.208 1.208 12 H -0.208 1.208 13 O -0.248 6.248 14 C 0.386 3.614 15 O -0.400 6.400 16 C -0.209 4.209 17 N -0.043 5.043 18 N -0.046 5.046 19 N -0.098 5.098 20 C 0.003 3.997 21 C -0.074 4.074 22 C -0.212 4.212 23 C 0.092 3.908 24 O -0.225 6.225 25 C -0.071 4.071 26 C -0.152 4.152 27 C -0.093 4.093 28 C -0.009 4.009 29 C -0.156 4.156 30 H 0.073 0.927 31 H 0.052 0.948 32 H 0.050 0.950 33 H 0.128 0.872 34 H 0.061 0.939 35 H 0.075 0.925 36 H 0.158 0.842 37 H 0.159 0.841 38 H 0.121 0.879 39 H 0.077 0.923 40 H 0.077 0.923 41 H 0.163 0.837 42 H 0.161 0.839 43 H 0.115 0.885 44 H 0.095 0.905 45 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -19.776 13.064 -16.663 28.972 hybrid contribution 0.414 -0.241 0.656 0.812 sum -19.362 12.822 -16.008 28.206 Atomic orbital electron populations 1.21863 0.98433 0.99044 1.00671 1.22028 0.92631 0.99298 1.03485 1.20778 0.95200 0.88809 0.78373 0.93260 1.21104 0.89634 1.38633 1.06189 0.91109 1.24869 0.99215 0.94807 0.95065 1.69897 1.35229 1.38093 1.09497 0.86233 0.83980 0.77846 0.78200 1.19413 1.20813 1.20753 1.86644 1.32551 1.61643 1.43950 1.19221 0.81391 0.76258 0.84521 1.90781 1.55748 1.59639 1.33809 1.20456 0.94729 1.10618 0.95057 1.74793 1.21966 1.08231 0.99262 1.82156 0.89556 1.15686 1.17208 1.47461 1.15815 1.37571 1.08985 1.17361 0.91936 0.95731 0.94629 1.20842 0.94875 0.98816 0.92824 1.21160 1.00002 0.98463 1.01597 1.19147 0.88366 0.90606 0.92690 1.86107 1.50539 1.55946 1.29951 1.23153 1.01174 1.02094 0.80697 1.20280 0.99312 1.02505 0.93132 1.20970 0.95354 0.92354 1.00605 1.21928 0.97641 0.94482 0.86835 1.20817 0.93388 1.06501 0.94862 0.92695 0.94805 0.95037 0.87218 0.93855 0.92505 0.84157 0.84130 0.87860 0.92257 0.92263 0.83668 0.83878 0.88539 0.90472 0.86831 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.13 8.56 37.16 0.32 -2.81 16 2 C -0.14 -3.44 5.49 -26.73 -0.15 -3.58 16 3 C 0.22 5.96 2.25 -27.88 -0.06 5.90 16 4 H 0.05 1.44 7.16 -51.93 -0.37 1.06 16 5 C -0.52 -14.81 8.90 -34.44 -0.31 -15.11 16 6 H 0.07 2.04 7.81 -52.49 -0.41 1.63 16 7 C 0.06 1.73 5.29 -17.82 -0.09 1.63 16 8 N -0.89 -25.17 11.29 55.43 0.63 -24.54 16 9 Si 0.91 21.46 29.54 -169.99 -5.02 16.44 16 10 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 11 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 12 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 13 O -0.33 -8.44 9.81 -40.64 -0.40 -8.84 16 14 C 0.54 11.99 6.41 34.45 0.22 12.21 16 15 O -0.51 -11.22 12.03 -19.28 -0.23 -11.45 16 16 C -0.07 -1.37 7.02 -83.56 -0.59 -1.95 16 17 N -0.17 -3.31 12.39 32.84 0.41 -2.91 16 18 N -0.07 -1.15 13.64 60.35 0.82 -0.32 16 19 N -0.32 -4.44 3.71 -6.69 -0.02 -4.47 16 20 C 0.09 1.00 6.13 -83.54 -0.51 0.49 16 21 C -0.05 -0.48 9.85 -39.43 -0.39 -0.87 16 22 C -0.19 -1.35 9.03 -39.46 -0.36 -1.70 16 23 C 0.14 1.02 6.69 -39.21 -0.26 0.75 16 24 O -0.31 -2.11 10.50 -19.52 -0.20 -2.32 16 25 C 0.02 0.08 9.81 101.05 0.99 1.07 16 26 C -0.13 -0.95 9.98 -39.46 -0.39 -1.34 16 27 C -0.07 -0.60 8.36 -39.42 -0.33 -0.93 16 28 C 0.13 1.86 6.84 -81.75 -0.56 1.30 16 29 C -0.10 -1.07 8.18 36.00 0.29 -0.78 16 30 H 0.05 1.22 7.79 -51.93 -0.40 0.82 16 31 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.03 0.67 6.06 -51.92 -0.31 0.35 16 33 H 0.11 2.96 5.95 -51.93 -0.31 2.66 16 34 H 0.04 1.07 8.14 -51.93 -0.42 0.65 16 35 H 0.27 7.06 8.31 -40.82 -0.34 6.72 16 36 H 0.14 1.24 8.06 -52.48 -0.42 0.82 16 37 H 0.14 0.63 6.29 -52.49 -0.33 0.30 16 38 H 0.10 0.16 8.14 -51.93 -0.42 -0.26 16 39 H 0.06 0.15 7.66 -51.93 -0.40 -0.25 16 40 H 0.06 0.14 7.66 -51.93 -0.40 -0.25 16 41 H 0.15 0.77 8.06 -52.49 -0.42 0.34 16 42 H 0.14 1.02 7.01 -52.49 -0.37 0.65 16 43 H 0.10 0.92 8.12 -51.93 -0.42 0.50 16 44 H 0.08 0.63 6.98 -51.93 -0.36 0.27 16 45 H 0.11 1.42 6.73 -51.93 -0.35 1.07 16 LS Contribution 377.10 15.07 5.68 5.68 Total: -1.00 -33.15 377.10 -6.20 -39.35 By element: Atomic # 1 Polarization: 4.80 SS G_CDS: -5.69 Total: -0.89 kcal Atomic # 6 Polarization: -3.56 SS G_CDS: -2.17 Total: -5.73 kcal Atomic # 7 Polarization: -34.07 SS G_CDS: 1.83 Total: -32.24 kcal Atomic # 8 Polarization: -21.78 SS G_CDS: -0.84 Total: -22.61 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -33.15 -6.20 -39.35 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000188078424.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.585 kcal (2) G-P(sol) polarization free energy of solvation -33.150 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.435 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.202 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.352 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.233 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds