Wall clock time and date at job start Wed Apr 1 2020 03:43:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 109.47402 * 2 1 4 4 H 1.08998 * 109.47014 * 54.99764 * 3 2 1 5 5 C 1.50708 * 109.46980 * 174.99864 * 3 2 1 6 6 H 1.07997 * 119.99644 * 120.00073 * 5 3 2 7 7 C 1.37880 * 119.99718 * 299.99974 * 5 3 2 8 8 N 1.31509 * 120.00148 * 359.97438 * 7 5 3 9 9 Si 1.86797 * 119.99573 * 180.02562 * 7 5 3 10 10 H 1.48504 * 109.47327 * 359.97438 * 9 7 5 11 11 H 1.48493 * 109.47259 * 119.99773 * 9 7 5 12 12 H 1.48504 * 109.46969 * 239.99876 * 9 7 5 13 13 O 1.45197 * 109.47074 * 294.99544 * 3 2 1 14 14 C 1.34755 * 116.99812 * 90.00283 * 13 3 2 15 15 O 1.21522 * 120.00209 * 359.97438 * 14 13 3 16 16 C 1.47370 * 120.00209 * 180.02562 * 14 13 3 17 17 N 1.34441 * 125.77349 * 359.68557 * 16 14 13 18 18 N 1.28759 * 109.56210 * 179.85562 * 17 16 14 19 19 N 1.40208 * 108.40501 * 0.40913 * 18 17 16 20 20 C 1.40308 * 126.60022 * 179.74976 * 19 18 17 21 21 C 1.38827 * 120.01420 * 41.75295 * 20 19 18 22 22 C 1.38060 * 119.99140 * 179.77162 * 21 20 19 23 23 C 1.38745 * 120.00730 * 0.52671 * 22 21 20 24 24 O 1.35930 * 119.98896 * 179.72757 * 23 22 21 25 25 C 1.42900 * 116.99879 * 359.97438 * 24 23 22 26 26 C 1.38748 * 120.02423 * 359.70219 * 23 22 21 27 27 C 1.38064 * 120.00839 * 0.04615 * 26 23 22 28 28 C 1.35018 * 106.79367 * 359.74897 * 19 18 17 29 29 C 1.50697 * 126.59965 * 179.97438 * 28 19 18 30 30 H 1.08999 * 109.47187 * 300.00765 * 1 2 3 31 31 H 1.08996 * 109.47668 * 179.97438 * 1 2 3 32 32 H 1.09008 * 109.46886 * 59.99606 * 1 2 3 33 33 H 1.09000 * 109.46581 * 120.00393 * 2 1 3 34 34 H 1.08999 * 109.47187 * 239.99235 * 2 1 3 35 35 H 0.97004 * 119.99791 * 179.97438 * 8 7 5 36 36 H 1.08003 * 120.00263 * 0.02562 * 21 20 19 37 37 H 1.08001 * 119.99717 * 180.23077 * 22 21 20 38 38 H 1.09004 * 109.47320 * 180.02562 * 25 24 23 39 39 H 1.09002 * 109.47537 * 299.99900 * 25 24 23 40 40 H 1.08996 * 109.47424 * 60.00006 * 25 24 23 41 41 H 1.07994 * 119.99558 * 180.02562 * 26 23 22 42 42 H 1.07993 * 120.00536 * 179.97438 * 27 26 23 43 43 H 1.08999 * 109.47253 * 264.67979 * 29 28 19 44 44 H 1.08994 * 109.47620 * 24.68580 * 29 28 19 45 45 H 1.09006 * 109.46749 * 144.68441 * 29 28 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5420 1.4441 0.1239 6 1 4.1473 1.8887 -0.6523 7 6 4.1433 0.8782 1.2281 8 7 3.4061 0.3373 2.1734 9 14 6.0049 0.8809 1.3819 10 1 6.5988 1.5459 0.1943 11 1 6.3990 1.6164 2.6103 12 1 6.4969 -0.5179 1.4631 13 8 1.6560 2.0916 -1.2407 14 6 0.4683 2.7279 -1.2561 15 8 -0.2277 2.7396 -0.2600 16 6 0.0128 3.4087 -2.4812 17 7 0.6881 3.4730 -3.6419 18 7 0.0021 4.1400 -4.5034 19 7 -1.1906 4.5548 -3.8941 20 6 -2.2138 5.3105 -4.4863 21 6 -2.6135 5.0389 -5.7878 22 6 -3.6235 5.7797 -6.3684 23 6 -4.2315 6.8028 -5.6552 24 8 -5.2221 7.5356 -6.2291 25 6 -5.5857 7.1978 -7.5692 26 6 -3.8292 7.0778 -4.3561 27 6 -2.8228 6.3341 -3.7728 28 6 -1.1650 4.0869 -2.6279 29 6 -2.2297 4.2764 -1.5783 30 1 -0.3633 0.5139 0.8899 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3633 0.5139 -0.8900 33 1 1.8932 -0.5139 0.8900 34 1 1.8933 -0.5139 -0.8899 35 1 3.8292 -0.0612 2.9500 36 1 -2.1371 4.2454 -6.3445 37 1 -3.9370 5.5661 -7.3795 38 1 -6.3852 7.8578 -7.9061 39 1 -4.7199 7.3145 -8.2210 40 1 -5.9291 6.1639 -7.6029 41 1 -4.3031 7.8739 -3.8012 42 1 -2.5094 6.5485 -2.7619 43 1 -1.9763 5.1333 -0.9542 44 1 -3.1904 4.4510 -2.0626 45 1 -2.2924 3.3816 -0.9588 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000188078424.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:43:08 Heat of formation + Delta-G solvation = -18.786440 kcal Electronic energy + Delta-G solvation = -29493.577292 eV Core-core repulsion = 25285.394254 eV Total energy + Delta-G solvation = -4208.183037 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -43.69258 -41.31522 -41.04657 -38.86666 -37.67448 -35.70578 -35.36586 -33.71809 -33.28255 -32.29858 -30.52977 -29.56927 -28.93279 -28.11116 -25.71340 -25.07624 -24.54080 -23.71022 -22.41549 -21.78413 -21.32940 -19.71846 -19.22127 -18.71091 -17.97748 -17.83193 -17.39556 -17.03560 -16.71974 -16.46715 -16.44341 -15.78872 -15.48501 -15.01399 -14.93296 -14.80443 -14.73703 -14.38796 -14.10144 -13.96974 -13.92213 -13.58978 -13.36186 -13.33166 -13.16421 -13.11359 -12.91394 -12.81614 -12.58745 -12.53211 -12.39612 -12.13769 -11.94884 -11.74730 -11.56817 -11.47689 -11.35503 -10.81469 -10.53696 -10.44851 -10.27338 -9.26852 -8.26733 -6.42190 -0.56417 0.09266 0.25943 0.43819 0.78583 1.41536 1.42159 1.55869 1.89295 1.94065 2.24238 2.39216 2.44823 3.01224 3.02547 3.35338 3.46396 3.64817 3.66406 3.76825 3.94731 4.23493 4.28932 4.36437 4.40654 4.42002 4.42216 4.43453 4.51573 4.57978 4.62171 4.65484 4.76399 4.84208 4.85482 5.00849 5.07881 5.11226 5.17162 5.23652 5.30424 5.37768 5.52357 5.62237 5.68251 5.92889 6.10816 6.26338 6.55530 6.67686 6.97293 7.28151 8.80295 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.028072 B = 0.002093 C = 0.002045 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 997.188855 B =13375.339538 C =13690.064969 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.130 4.130 3 C 0.225 3.775 4 H 0.019 0.981 5 C -0.551 4.551 6 H 0.058 0.942 7 C 0.021 3.979 8 N -0.910 5.910 9 Si 0.978 3.022 10 H -0.270 1.270 11 H -0.272 1.272 12 H -0.270 1.270 13 O -0.354 6.354 14 C 0.542 3.458 15 O -0.516 6.516 16 C -0.108 4.108 17 N -0.205 5.205 18 N -0.078 5.078 19 N -0.299 5.299 20 C 0.054 3.946 21 C -0.058 4.058 22 C -0.188 4.188 23 C 0.144 3.856 24 O -0.323 6.323 25 C 0.012 3.988 26 C -0.132 4.132 27 C -0.065 4.065 28 C 0.148 3.852 29 C -0.096 4.096 30 H 0.046 0.954 31 H 0.061 0.939 32 H 0.032 0.968 33 H 0.091 0.909 34 H 0.039 0.961 35 H 0.272 0.728 36 H 0.136 0.864 37 H 0.166 0.834 38 H 0.121 0.879 39 H 0.068 0.932 40 H 0.070 0.930 41 H 0.167 0.833 42 H 0.156 0.844 43 H 0.117 0.883 44 H 0.112 0.888 45 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.510 14.464 -16.973 31.686 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.168 4.168 3 C 0.173 3.827 4 H 0.037 0.963 5 C -0.589 4.589 6 H 0.076 0.924 7 C -0.179 4.179 8 N -0.548 5.548 9 Si 0.802 3.198 10 H -0.195 1.195 11 H -0.197 1.197 12 H -0.195 1.195 13 O -0.269 6.269 14 C 0.385 3.615 15 O -0.405 6.405 16 C -0.245 4.245 17 N -0.079 5.079 18 N -0.057 5.057 19 N -0.078 5.078 20 C -0.036 4.036 21 C -0.078 4.078 22 C -0.207 4.207 23 C 0.097 3.903 24 O -0.235 6.235 25 C -0.082 4.082 26 C -0.151 4.151 27 C -0.086 4.086 28 C 0.012 3.988 29 C -0.154 4.154 30 H 0.065 0.935 31 H 0.080 0.920 32 H 0.051 0.949 33 H 0.109 0.891 34 H 0.057 0.943 35 H 0.081 0.919 36 H 0.154 0.846 37 H 0.183 0.817 38 H 0.139 0.861 39 H 0.086 0.914 40 H 0.088 0.912 41 H 0.185 0.815 42 H 0.174 0.826 43 H 0.135 0.865 44 H 0.130 0.870 45 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -21.918 14.499 -17.700 31.685 hybrid contribution 0.813 -0.501 0.814 1.255 sum -21.106 13.999 -16.886 30.439 Atomic orbital electron populations 1.21713 0.95907 1.00755 1.00288 1.21878 0.94865 0.97872 1.02219 1.20507 0.94562 0.89459 0.78217 0.96318 1.21328 0.90652 1.40054 1.06822 0.92367 1.25719 1.04030 0.93838 0.94294 1.69991 1.37175 1.37827 1.09775 0.85208 0.77980 0.78394 0.78265 1.19458 1.19744 1.19478 1.86621 1.34667 1.62625 1.42992 1.19612 0.80288 0.75846 0.85722 1.90752 1.55509 1.59895 1.34389 1.20234 0.96845 1.13237 0.94180 1.74751 1.23423 1.09783 0.99921 1.82031 0.90698 1.15802 1.17132 1.47583 1.15360 1.36440 1.08457 1.17767 0.92504 0.97412 0.95875 1.20913 0.95451 0.99120 0.92277 1.21367 0.98968 0.97733 1.02603 1.19343 0.88020 0.90149 0.92811 1.86113 1.49960 1.55873 1.31602 1.23463 1.02205 1.03330 0.79177 1.20535 0.98717 1.02539 0.93305 1.21102 0.95011 0.91439 1.01002 1.22332 0.96691 0.92136 0.87675 1.21006 0.93742 1.06573 0.94033 0.93460 0.91969 0.94924 0.89076 0.94257 0.91905 0.84615 0.81654 0.86102 0.91355 0.91186 0.81530 0.82626 0.86496 0.86981 0.88233 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.73 8.56 71.98 0.62 -5.11 16 2 C -0.13 -6.78 5.49 30.59 0.17 -6.61 16 3 C 0.23 12.77 2.25 29.85 0.07 12.84 16 4 H 0.02 1.17 7.16 -2.39 -0.02 1.15 16 5 C -0.55 -32.79 8.90 25.60 0.23 -32.57 16 6 H 0.06 3.51 7.81 -2.91 -0.02 3.49 16 7 C 0.02 1.20 5.29 84.66 0.45 1.65 16 8 N -0.91 -52.40 11.29 21.45 0.24 -52.16 16 9 Si 0.98 44.44 29.54 68.60 2.03 46.47 16 10 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 11 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 12 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 13 O -0.35 -18.87 9.81 -56.66 -0.56 -19.43 16 14 C 0.54 24.92 6.41 70.23 0.45 25.37 16 15 O -0.52 -23.44 12.03 19.77 0.24 -23.20 16 16 C -0.11 -4.23 7.02 40.79 0.29 -3.95 16 17 N -0.21 -8.40 12.39 -50.02 -0.62 -9.02 16 18 N -0.08 -2.71 13.64 37.02 0.50 -2.20 16 19 N -0.30 -8.20 3.71 -175.07 -0.65 -8.85 16 20 C 0.05 1.06 6.13 38.07 0.23 1.30 16 21 C -0.06 -0.95 9.85 22.37 0.22 -0.73 16 22 C -0.19 -2.11 9.03 22.35 0.20 -1.91 16 23 C 0.14 1.66 6.69 22.51 0.15 1.81 16 24 O -0.32 -3.29 10.50 -92.77 -0.97 -4.27 16 25 C 0.01 0.04 9.81 113.37 1.11 1.15 16 26 C -0.13 -1.46 9.98 22.35 0.22 -1.24 16 27 C -0.07 -0.92 8.36 22.37 0.19 -0.73 16 28 C 0.15 4.33 6.84 41.71 0.29 4.62 16 29 C -0.10 -1.94 8.18 71.23 0.58 -1.35 16 30 H 0.05 2.14 7.79 -2.39 -0.02 2.12 16 31 H 0.06 2.36 8.14 -2.39 -0.02 2.34 16 32 H 0.03 1.41 6.06 -2.38 -0.01 1.39 16 33 H 0.09 5.08 5.95 -2.39 -0.01 5.06 16 34 H 0.04 2.02 8.14 -2.39 -0.02 2.00 16 35 H 0.27 14.52 8.31 -92.71 -0.77 13.75 16 36 H 0.14 2.31 8.06 -2.91 -0.02 2.29 16 37 H 0.17 0.95 6.29 -2.91 -0.02 0.93 16 38 H 0.12 -0.02 8.14 -2.39 -0.02 -0.04 16 39 H 0.07 0.12 7.66 -2.39 -0.02 0.10 16 40 H 0.07 0.10 7.66 -2.39 -0.02 0.08 16 41 H 0.17 1.12 8.06 -2.91 -0.02 1.10 16 42 H 0.16 1.73 7.01 -2.91 -0.02 1.71 16 43 H 0.12 1.95 8.12 -2.39 -0.02 1.93 16 44 H 0.11 1.49 6.98 -2.39 -0.02 1.47 16 45 H 0.10 2.41 6.73 -2.38 -0.02 2.39 16 Total: -1.00 -75.22 377.10 6.70 -68.52 By element: Atomic # 1 Polarization: 8.58 SS G_CDS: 1.03 Total: 9.61 kcal Atomic # 6 Polarization: -10.93 SS G_CDS: 5.46 Total: -5.47 kcal Atomic # 7 Polarization: -71.71 SS G_CDS: -0.52 Total: -72.23 kcal Atomic # 8 Polarization: -45.61 SS G_CDS: -1.29 Total: -46.90 kcal Atomic # 14 Polarization: 44.44 SS G_CDS: 2.03 Total: 46.47 kcal Total: -75.22 6.70 -68.52 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000188078424.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.734 kcal (2) G-P(sol) polarization free energy of solvation -75.223 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.703 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.520 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.786 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds