Wall clock time and date at job start Wed Apr 1 2020 03:43:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52995 * 109.47118 * 2 1 4 4 H 1.08990 * 109.47609 * 304.35399 * 3 2 1 5 5 C 1.50707 * 109.46838 * 184.34951 * 3 2 1 6 6 H 1.07991 * 120.00098 * 245.53378 * 5 3 2 7 7 C 1.37876 * 119.99554 * 65.53910 * 5 3 2 8 8 N 1.31519 * 120.00295 * 9.32983 * 7 5 3 9 9 Si 1.86804 * 119.99763 * 189.32490 * 7 5 3 10 10 H 1.48505 * 109.46929 * 94.99166 * 9 7 5 11 11 H 1.48504 * 109.47118 * 214.98944 * 9 7 5 12 12 H 1.48499 * 109.47108 * 334.99445 * 9 7 5 13 13 O 1.45203 * 109.47130 * 64.35650 * 3 2 1 14 14 C 1.34754 * 116.99887 * 269.99749 * 13 3 2 15 15 O 1.21521 * 120.00039 * 359.97438 * 14 13 3 16 16 C 1.47360 * 120.00254 * 179.97438 * 14 13 3 17 17 N 1.34449 * 125.77826 * 359.69369 * 16 14 13 18 18 N 1.28752 * 109.56763 * 179.84936 * 17 16 14 19 19 N 1.40207 * 108.40437 * 0.40843 * 18 17 16 20 20 C 1.40312 * 126.60379 * 179.71327 * 19 18 17 21 21 C 1.38836 * 120.00674 * 41.74324 * 20 19 18 22 22 C 1.38061 * 119.98546 * 179.74445 * 21 20 19 23 23 C 1.38749 * 120.00993 * 0.53194 * 22 21 20 24 24 O 1.35928 * 119.98878 * 179.74480 * 23 22 21 25 25 C 1.42900 * 117.00138 * 359.97385 * 24 23 22 26 26 C 1.38749 * 120.02001 * 359.72197 * 23 22 21 27 27 C 1.38058 * 120.01080 * 0.02562 * 26 23 22 28 28 C 1.35018 * 106.79541 * 359.74414 * 19 18 17 29 29 C 1.50704 * 126.60450 * 180.02562 * 28 19 18 30 30 H 1.09006 * 109.46806 * 59.99365 * 1 2 3 31 31 H 1.08993 * 109.47144 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.47296 * 300.00154 * 1 2 3 33 33 H 1.09002 * 109.46848 * 240.00436 * 2 1 3 34 34 H 1.08999 * 109.46614 * 120.00277 * 2 1 3 35 35 H 0.96997 * 119.99710 * 180.02562 * 8 7 5 36 36 H 1.08003 * 120.00689 * 359.97212 * 21 20 19 37 37 H 1.08002 * 119.99225 * 180.22517 * 22 21 20 38 38 H 1.08997 * 109.47111 * 60.00489 * 25 24 23 39 39 H 1.08998 * 109.46916 * 180.02562 * 25 24 23 40 40 H 1.08993 * 109.47117 * 299.99990 * 25 24 23 41 41 H 1.08003 * 119.99159 * 180.02562 * 26 23 22 42 42 H 1.08004 * 120.00571 * 180.02562 * 27 26 23 43 43 H 1.09003 * 109.46665 * 272.81103 * 29 28 19 44 44 H 1.08997 * 109.47043 * 32.80668 * 29 28 19 45 45 H 1.08992 * 109.46957 * 152.81661 * 29 28 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6145 1.9783 -0.8483 5 6 3.5432 1.4437 -0.1078 6 1 4.1430 1.8099 0.7122 7 6 4.1525 0.9775 -1.2533 8 7 3.4302 0.7046 -2.3180 9 14 6.0042 0.7336 -1.2933 10 1 6.3242 -0.6806 -0.9723 11 1 6.5177 1.0623 -2.6474 12 1 6.6426 1.6251 -0.2918 13 8 1.6428 2.0963 1.2341 14 6 0.4549 2.7326 1.2345 15 8 -0.2300 2.7412 0.2307 16 6 -0.0135 3.4179 2.4520 17 7 0.6440 3.4768 3.6232 18 7 -0.0466 4.1555 4.4718 19 7 -1.2325 4.5684 3.8481 20 6 -2.2624 5.3255 4.4267 21 6 -1.9556 6.4040 5.2454 22 6 -2.9693 7.1518 5.8103 23 6 -4.2945 6.8190 5.5688 24 8 -5.2922 7.5525 6.1294 25 6 -4.9037 8.6513 6.9563 26 6 -4.6015 5.7381 4.7549 27 6 -3.5885 4.9928 4.1854 28 6 -1.1930 4.0967 2.5836 29 6 -2.2459 4.2829 1.5217 30 1 -0.3633 0.5140 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3634 0.5138 0.8899 33 1 1.8933 -0.5138 -0.8901 34 1 1.8933 -0.5139 0.8900 35 1 3.8589 0.3763 -3.1237 36 1 -0.9241 6.6601 5.4374 37 1 -2.7308 7.9930 6.4443 38 1 -4.3154 9.3571 6.3699 39 1 -5.7939 9.1501 7.3395 40 1 -4.3057 8.2846 7.7904 41 1 -5.6332 5.4797 4.5669 42 1 -3.8276 4.1517 3.5516 43 1 -2.9905 3.4912 1.6057 44 1 -2.7285 5.2511 1.6544 45 1 -1.7804 4.2407 0.5371 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000188078443.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:43:12 Heat of formation + Delta-G solvation = -0.021724 kcal Electronic energy + Delta-G solvation = -29488.545379 eV Core-core repulsion = 25281.176041 eV Total energy + Delta-G solvation = -4207.369338 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.46195 -40.65649 -39.34118 -38.20588 -35.82840 -34.57250 -33.36943 -32.59846 -31.63974 -31.39722 -29.73291 -28.28404 -27.63835 -27.13150 -24.19035 -23.93701 -23.15328 -22.71056 -21.20402 -20.44666 -19.61599 -18.79768 -18.28830 -17.01458 -16.76341 -16.32708 -16.25477 -16.03857 -15.53119 -15.17275 -14.99412 -14.50849 -14.43656 -14.28912 -14.10024 -13.63986 -13.35264 -13.19349 -13.08764 -12.82815 -12.79998 -12.50402 -12.24867 -11.93267 -11.89837 -11.54676 -11.51584 -11.24661 -11.17380 -11.09669 -10.93890 -10.60954 -10.60281 -10.21426 -9.87124 -9.72815 -9.68028 -9.35908 -9.19841 -8.78955 -8.56103 -8.41224 -6.15756 -4.18302 0.33076 0.68185 1.31549 1.83503 1.85172 2.66605 3.04269 3.29475 3.35157 3.38865 3.55631 3.57798 4.11882 4.16192 4.21290 4.37871 4.45313 4.55320 4.59619 4.60753 4.70583 4.86140 4.93315 4.99262 5.17578 5.23207 5.30794 5.32224 5.39354 5.55439 5.66520 5.80941 5.84247 5.93587 6.08163 6.21010 6.28749 6.43306 6.51410 6.76360 6.87632 6.95595 7.15306 7.19213 7.60431 7.72033 7.86652 7.98196 8.16896 8.64851 8.95349 9.45283 10.93394 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.027306 B = 0.002118 C = 0.002031 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1025.175309 B =13216.302387 C =13785.049250 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.128 4.128 3 C 0.219 3.781 4 H 0.056 0.944 5 C -0.521 4.521 6 H 0.070 0.930 7 C 0.065 3.935 8 N -0.886 5.886 9 Si 0.907 3.093 10 H -0.278 1.278 11 H -0.285 1.285 12 H -0.271 1.271 13 O -0.333 6.333 14 C 0.545 3.455 15 O -0.510 6.510 16 C -0.072 4.072 17 N -0.169 5.169 18 N -0.068 5.068 19 N -0.318 5.318 20 C 0.094 3.906 21 C -0.054 4.054 22 C -0.193 4.193 23 C 0.138 3.862 24 O -0.313 6.313 25 C 0.024 3.976 26 C -0.133 4.133 27 C -0.072 4.072 28 C 0.126 3.874 29 C -0.101 4.101 30 H 0.056 0.944 31 H 0.034 0.966 32 H 0.033 0.967 33 H 0.090 0.910 34 H 0.046 0.954 35 H 0.266 0.734 36 H 0.141 0.859 37 H 0.141 0.859 38 H 0.059 0.941 39 H 0.103 0.897 40 H 0.059 0.941 41 H 0.145 0.855 42 H 0.143 0.857 43 H 0.093 0.907 44 H 0.078 0.922 45 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.659 14.300 15.386 28.770 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.166 4.166 3 C 0.166 3.834 4 H 0.074 0.926 5 C -0.559 4.559 6 H 0.089 0.911 7 C -0.138 4.138 8 N -0.524 5.524 9 Si 0.734 3.266 10 H -0.204 1.204 11 H -0.211 1.211 12 H -0.195 1.195 13 O -0.248 6.248 14 C 0.387 3.613 15 O -0.399 6.399 16 C -0.208 4.208 17 N -0.043 5.043 18 N -0.046 5.046 19 N -0.098 5.098 20 C 0.004 3.996 21 C -0.074 4.074 22 C -0.212 4.212 23 C 0.092 3.908 24 O -0.226 6.226 25 C -0.071 4.071 26 C -0.152 4.152 27 C -0.093 4.093 28 C -0.009 4.009 29 C -0.159 4.159 30 H 0.075 0.925 31 H 0.053 0.947 32 H 0.052 0.948 33 H 0.109 0.891 34 H 0.065 0.935 35 H 0.075 0.925 36 H 0.159 0.841 37 H 0.159 0.841 38 H 0.077 0.923 39 H 0.121 0.879 40 H 0.077 0.923 41 H 0.163 0.837 42 H 0.161 0.839 43 H 0.111 0.889 44 H 0.097 0.903 45 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -19.135 14.176 16.130 28.763 hybrid contribution 0.608 -0.046 -0.736 0.956 sum -18.526 14.130 15.394 27.926 Atomic orbital electron populations 1.21869 0.98122 0.99189 1.00961 1.21928 0.92974 0.99349 1.02393 1.20776 0.95157 0.88498 0.78921 0.92574 1.21023 0.89441 1.43427 1.02049 0.91133 1.24880 0.99093 0.95198 0.94580 1.69991 1.35966 1.44168 1.02236 0.86332 0.84124 0.78704 0.77446 1.20385 1.21094 1.19521 1.86643 1.32513 1.61514 1.44094 1.19221 0.81318 0.76281 0.84519 1.90770 1.56562 1.59395 1.33209 1.20451 0.94994 1.10604 0.94797 1.74791 1.21809 1.08191 0.99481 1.82152 0.90262 1.15268 1.16915 1.47467 1.16357 1.37524 1.08502 1.17362 0.85396 0.94569 1.02320 1.20850 1.00614 0.91634 0.94258 1.21163 0.91254 1.03358 1.05441 1.19147 0.87123 0.91618 0.92925 1.86106 1.32182 1.42316 1.61948 1.23151 1.02908 0.87420 0.93636 1.20276 1.00313 0.95161 0.99484 1.20956 0.89703 0.99475 0.99139 1.21938 0.97570 0.94799 0.86546 1.20874 0.95397 1.02797 0.96875 0.92500 0.94715 0.94758 0.89147 0.93501 0.92479 0.84143 0.84129 0.92256 0.87862 0.92259 0.83681 0.83916 0.88874 0.90314 0.86356 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.10 8.56 37.16 0.32 -2.78 16 2 C -0.13 -3.17 5.54 -26.73 -0.15 -3.32 16 3 C 0.22 5.89 2.12 -27.88 -0.06 5.83 16 4 H 0.06 1.64 7.10 -51.93 -0.37 1.28 16 5 C -0.52 -14.91 8.82 -34.44 -0.30 -15.21 16 6 H 0.07 2.03 7.83 -52.49 -0.41 1.62 16 7 C 0.07 1.81 5.17 -17.82 -0.09 1.72 16 8 N -0.89 -25.31 12.16 55.43 0.67 -24.63 16 9 Si 0.91 21.45 29.55 -169.99 -5.02 16.42 16 10 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 11 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 12 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 13 O -0.33 -8.40 9.80 -40.64 -0.40 -8.80 16 14 C 0.54 11.97 6.38 34.44 0.22 12.19 16 15 O -0.51 -11.20 11.85 -19.28 -0.23 -11.43 16 16 C -0.07 -1.36 7.02 -83.56 -0.59 -1.95 16 17 N -0.17 -3.31 12.39 32.84 0.41 -2.90 16 18 N -0.07 -1.14 13.64 60.35 0.82 -0.32 16 19 N -0.32 -4.44 3.71 -6.68 -0.02 -4.47 16 20 C 0.09 1.00 6.17 -83.53 -0.52 0.49 16 21 C -0.05 -0.49 9.85 -39.43 -0.39 -0.88 16 22 C -0.19 -1.35 9.03 -39.46 -0.36 -1.71 16 23 C 0.14 1.02 6.69 -39.20 -0.26 0.76 16 24 O -0.31 -2.12 10.50 -19.51 -0.20 -2.32 16 25 C 0.02 0.08 9.81 101.05 0.99 1.07 16 26 C -0.13 -0.95 9.98 -39.46 -0.39 -1.34 16 27 C -0.07 -0.60 8.58 -39.43 -0.34 -0.94 16 28 C 0.13 1.87 6.84 -81.74 -0.56 1.31 16 29 C -0.10 -1.12 8.32 36.01 0.30 -0.82 16 30 H 0.06 1.25 7.75 -51.93 -0.40 0.85 16 31 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.03 0.72 6.07 -51.93 -0.32 0.40 16 33 H 0.09 2.38 6.81 -51.93 -0.35 2.03 16 34 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 35 H 0.27 7.14 8.31 -40.82 -0.34 6.80 16 36 H 0.14 1.26 8.06 -52.48 -0.42 0.84 16 37 H 0.14 0.64 6.29 -52.49 -0.33 0.31 16 38 H 0.06 0.15 7.66 -51.93 -0.40 -0.25 16 39 H 0.10 0.16 8.14 -51.93 -0.42 -0.26 16 40 H 0.06 0.15 7.66 -51.93 -0.40 -0.25 16 41 H 0.15 0.76 8.06 -52.48 -0.42 0.34 16 42 H 0.14 1.00 6.79 -52.48 -0.36 0.64 16 43 H 0.09 0.84 7.79 -51.93 -0.40 0.43 16 44 H 0.08 0.66 7.48 -51.93 -0.39 0.27 16 45 H 0.12 1.54 6.28 -51.93 -0.33 1.21 16 LS Contribution 378.16 15.07 5.70 5.70 Total: -1.00 -33.23 378.16 -6.15 -39.39 By element: Atomic # 1 Polarization: 4.65 SS G_CDS: -5.70 Total: -1.05 kcal Atomic # 6 Polarization: -3.40 SS G_CDS: -2.17 Total: -5.58 kcal Atomic # 7 Polarization: -34.21 SS G_CDS: 1.88 Total: -32.33 kcal Atomic # 8 Polarization: -21.72 SS G_CDS: -0.83 Total: -22.56 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.42 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -33.23 -6.15 -39.39 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000188078443.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.364 kcal (2) G-P(sol) polarization free energy of solvation -33.234 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.130 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.152 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.386 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.022 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds