Wall clock time and date at job start Wed Apr 1 2020 03:43:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52995 * 109.47118 * 2 1 4 4 H 1.08990 * 109.47609 * 304.35399 * 3 2 1 5 5 C 1.50707 * 109.46838 * 184.34951 * 3 2 1 6 6 H 1.07991 * 120.00098 * 245.53378 * 5 3 2 7 7 C 1.37876 * 119.99554 * 65.53910 * 5 3 2 8 8 N 1.31519 * 120.00295 * 9.32983 * 7 5 3 9 9 Si 1.86804 * 119.99763 * 189.32490 * 7 5 3 10 10 H 1.48505 * 109.46929 * 94.99166 * 9 7 5 11 11 H 1.48504 * 109.47118 * 214.98944 * 9 7 5 12 12 H 1.48499 * 109.47108 * 334.99445 * 9 7 5 13 13 O 1.45203 * 109.47130 * 64.35650 * 3 2 1 14 14 C 1.34754 * 116.99887 * 269.99749 * 13 3 2 15 15 O 1.21521 * 120.00039 * 359.97438 * 14 13 3 16 16 C 1.47360 * 120.00254 * 179.97438 * 14 13 3 17 17 N 1.34449 * 125.77826 * 359.69369 * 16 14 13 18 18 N 1.28752 * 109.56763 * 179.84936 * 17 16 14 19 19 N 1.40207 * 108.40437 * 0.40843 * 18 17 16 20 20 C 1.40312 * 126.60379 * 179.71327 * 19 18 17 21 21 C 1.38836 * 120.00674 * 41.74324 * 20 19 18 22 22 C 1.38061 * 119.98546 * 179.74445 * 21 20 19 23 23 C 1.38749 * 120.00993 * 0.53194 * 22 21 20 24 24 O 1.35928 * 119.98878 * 179.74480 * 23 22 21 25 25 C 1.42900 * 117.00138 * 359.97385 * 24 23 22 26 26 C 1.38749 * 120.02001 * 359.72197 * 23 22 21 27 27 C 1.38058 * 120.01080 * 0.02562 * 26 23 22 28 28 C 1.35018 * 106.79541 * 359.74414 * 19 18 17 29 29 C 1.50704 * 126.60450 * 180.02562 * 28 19 18 30 30 H 1.09006 * 109.46806 * 59.99365 * 1 2 3 31 31 H 1.08993 * 109.47144 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.47296 * 300.00154 * 1 2 3 33 33 H 1.09002 * 109.46848 * 240.00436 * 2 1 3 34 34 H 1.08999 * 109.46614 * 120.00277 * 2 1 3 35 35 H 0.96997 * 119.99710 * 180.02562 * 8 7 5 36 36 H 1.08003 * 120.00689 * 359.97212 * 21 20 19 37 37 H 1.08002 * 119.99225 * 180.22517 * 22 21 20 38 38 H 1.08997 * 109.47111 * 60.00489 * 25 24 23 39 39 H 1.08998 * 109.46916 * 180.02562 * 25 24 23 40 40 H 1.08993 * 109.47117 * 299.99990 * 25 24 23 41 41 H 1.08003 * 119.99159 * 180.02562 * 26 23 22 42 42 H 1.08004 * 120.00571 * 180.02562 * 27 26 23 43 43 H 1.09003 * 109.46665 * 272.81103 * 29 28 19 44 44 H 1.08997 * 109.47043 * 32.80668 * 29 28 19 45 45 H 1.08992 * 109.46957 * 152.81661 * 29 28 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6145 1.9783 -0.8483 5 6 3.5432 1.4437 -0.1078 6 1 4.1430 1.8099 0.7122 7 6 4.1525 0.9775 -1.2533 8 7 3.4302 0.7046 -2.3180 9 14 6.0042 0.7336 -1.2933 10 1 6.3242 -0.6806 -0.9723 11 1 6.5177 1.0623 -2.6474 12 1 6.6426 1.6251 -0.2918 13 8 1.6428 2.0963 1.2341 14 6 0.4549 2.7326 1.2345 15 8 -0.2300 2.7412 0.2307 16 6 -0.0135 3.4179 2.4520 17 7 0.6440 3.4768 3.6232 18 7 -0.0466 4.1555 4.4718 19 7 -1.2325 4.5684 3.8481 20 6 -2.2624 5.3255 4.4267 21 6 -1.9556 6.4040 5.2454 22 6 -2.9693 7.1518 5.8103 23 6 -4.2945 6.8190 5.5688 24 8 -5.2922 7.5525 6.1294 25 6 -4.9037 8.6513 6.9563 26 6 -4.6015 5.7381 4.7549 27 6 -3.5885 4.9928 4.1854 28 6 -1.1930 4.0967 2.5836 29 6 -2.2459 4.2829 1.5217 30 1 -0.3633 0.5140 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3634 0.5138 0.8899 33 1 1.8933 -0.5138 -0.8901 34 1 1.8933 -0.5139 0.8900 35 1 3.8589 0.3763 -3.1237 36 1 -0.9241 6.6601 5.4374 37 1 -2.7308 7.9930 6.4443 38 1 -4.3154 9.3571 6.3699 39 1 -5.7939 9.1501 7.3395 40 1 -4.3057 8.2846 7.7904 41 1 -5.6332 5.4797 4.5669 42 1 -3.8276 4.1517 3.5516 43 1 -2.9905 3.4912 1.6057 44 1 -2.7285 5.2511 1.6544 45 1 -1.7804 4.2407 0.5371 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000188078443.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:43:12 Heat of formation + Delta-G solvation = -20.216463 kcal Electronic energy + Delta-G solvation = -29489.421088 eV Core-core repulsion = 25281.176041 eV Total energy + Delta-G solvation = -4208.245048 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -43.68807 -41.31338 -41.04657 -38.86171 -37.67335 -35.68479 -35.32819 -33.72376 -33.36531 -32.29555 -30.52746 -29.56517 -28.92710 -28.11091 -25.70585 -25.06982 -24.53938 -23.70791 -22.43811 -21.79017 -21.34530 -19.71879 -19.22180 -18.69225 -18.00927 -17.80177 -17.35620 -17.06674 -16.72307 -16.56444 -16.34111 -15.79136 -15.47668 -15.04692 -14.85764 -14.81529 -14.74370 -14.42345 -14.11120 -14.02878 -13.82953 -13.61754 -13.44617 -13.33799 -13.17345 -13.07454 -12.91887 -12.81582 -12.59640 -12.51557 -12.38950 -12.14045 -11.94676 -11.77990 -11.54716 -11.50421 -11.34212 -10.82380 -10.55695 -10.44726 -10.27224 -9.26544 -8.29471 -6.41413 -0.56166 0.09746 0.26275 0.44221 0.78845 1.41238 1.42918 1.54374 1.88935 1.94791 2.24360 2.39321 2.44970 3.01323 3.01799 3.36085 3.46694 3.64939 3.66380 3.77108 3.95152 4.23344 4.28439 4.36109 4.38493 4.39856 4.42070 4.43587 4.51741 4.56564 4.62637 4.65878 4.76517 4.84404 4.85834 5.01906 5.08190 5.09816 5.17442 5.22138 5.30316 5.35297 5.52786 5.62081 5.62834 5.85385 6.09252 6.26421 6.55924 6.68418 6.97603 7.27953 8.80028 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.027306 B = 0.002118 C = 0.002031 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1025.175309 B =13216.302387 C =13785.049250 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.122 4.122 3 C 0.224 3.776 4 H 0.023 0.977 5 C -0.553 4.553 6 H 0.058 0.942 7 C 0.023 3.977 8 N -0.911 5.911 9 Si 0.975 3.025 10 H -0.267 1.267 11 H -0.275 1.275 12 H -0.270 1.270 13 O -0.353 6.353 14 C 0.542 3.458 15 O -0.516 6.516 16 C -0.108 4.108 17 N -0.205 5.205 18 N -0.078 5.078 19 N -0.299 5.299 20 C 0.054 3.946 21 C -0.059 4.059 22 C -0.188 4.188 23 C 0.143 3.857 24 O -0.323 6.323 25 C 0.012 3.988 26 C -0.132 4.132 27 C -0.064 4.064 28 C 0.148 3.852 29 C -0.099 4.099 30 H 0.046 0.954 31 H 0.064 0.936 32 H 0.035 0.965 33 H 0.071 0.929 34 H 0.046 0.954 35 H 0.271 0.729 36 H 0.135 0.865 37 H 0.165 0.835 38 H 0.069 0.931 39 H 0.121 0.879 40 H 0.068 0.932 41 H 0.168 0.832 42 H 0.157 0.843 43 H 0.121 0.879 44 H 0.111 0.889 45 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.882 15.424 16.536 31.467 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.160 4.160 3 C 0.171 3.829 4 H 0.041 0.959 5 C -0.591 4.591 6 H 0.077 0.923 7 C -0.177 4.177 8 N -0.548 5.548 9 Si 0.798 3.202 10 H -0.192 1.192 11 H -0.200 1.200 12 H -0.194 1.194 13 O -0.269 6.269 14 C 0.386 3.614 15 O -0.405 6.405 16 C -0.245 4.245 17 N -0.079 5.079 18 N -0.057 5.057 19 N -0.079 5.079 20 C -0.035 4.035 21 C -0.079 4.079 22 C -0.207 4.207 23 C 0.097 3.903 24 O -0.235 6.235 25 C -0.082 4.082 26 C -0.151 4.151 27 C -0.084 4.084 28 C 0.012 3.988 29 C -0.157 4.157 30 H 0.065 0.935 31 H 0.083 0.917 32 H 0.054 0.946 33 H 0.090 0.910 34 H 0.065 0.935 35 H 0.081 0.919 36 H 0.153 0.847 37 H 0.183 0.817 38 H 0.088 0.912 39 H 0.139 0.861 40 H 0.086 0.914 41 H 0.185 0.815 42 H 0.175 0.825 43 H 0.139 0.861 44 H 0.130 0.870 45 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -21.390 15.327 17.311 31.499 hybrid contribution 1.053 -0.175 -0.952 1.430 sum -20.337 15.152 16.360 30.180 Atomic orbital electron populations 1.21723 0.95580 1.00997 1.00504 1.21775 0.95220 0.97658 1.01329 1.20507 0.94468 0.89342 0.78617 0.95948 1.21265 0.90545 1.44841 1.02417 0.92330 1.25728 1.03907 0.94260 0.93826 1.70083 1.37968 1.44042 1.02703 0.85297 0.78121 0.79003 0.77762 1.19194 1.19970 1.19435 1.86617 1.34617 1.62488 1.43137 1.19612 0.80238 0.75879 0.85701 1.90745 1.56359 1.59654 1.33791 1.20230 0.97103 1.13221 0.93944 1.74749 1.23313 1.09652 1.00143 1.82028 0.91542 1.15288 1.16814 1.47583 1.15955 1.36366 1.07957 1.17770 0.85364 0.95737 1.04669 1.20915 1.01042 0.91703 0.94199 1.21364 0.90704 1.03546 1.05102 1.19347 0.87359 0.91429 0.92214 1.86111 1.32285 1.43017 1.62125 1.23458 1.04313 0.86741 0.93651 1.20540 1.01041 0.94690 0.98804 1.21098 0.88626 0.99785 0.98936 1.22343 0.96592 0.92587 0.87287 1.21054 0.94724 1.05623 0.94294 0.93452 0.91684 0.94612 0.91035 0.93473 0.91943 0.84709 0.81718 0.91242 0.86089 0.91353 0.81481 0.82520 0.86087 0.87023 0.88293 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.65 8.56 71.98 0.62 -5.04 16 2 C -0.12 -6.20 5.54 30.59 0.17 -6.03 16 3 C 0.22 12.62 2.12 29.85 0.06 12.68 16 4 H 0.02 1.40 7.10 -2.39 -0.02 1.38 16 5 C -0.55 -32.90 8.82 25.60 0.23 -32.68 16 6 H 0.06 3.52 7.83 -2.92 -0.02 3.50 16 7 C 0.02 1.33 5.17 84.65 0.44 1.76 16 8 N -0.91 -53.08 12.16 21.45 0.26 -52.82 16 9 Si 0.97 44.47 29.55 68.60 2.03 46.50 16 10 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 11 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 12 H -0.27 -12.18 7.11 99.48 0.71 -11.48 16 13 O -0.35 -18.77 9.80 -56.65 -0.56 -19.33 16 14 C 0.54 24.90 6.38 70.22 0.45 25.35 16 15 O -0.52 -23.49 11.85 19.77 0.23 -23.26 16 16 C -0.11 -4.23 7.02 40.79 0.29 -3.94 16 17 N -0.21 -8.37 12.39 -50.02 -0.62 -8.99 16 18 N -0.08 -2.71 13.64 37.02 0.50 -2.20 16 19 N -0.30 -8.19 3.71 -175.06 -0.65 -8.84 16 20 C 0.05 1.07 6.17 38.07 0.23 1.30 16 21 C -0.06 -0.98 9.85 22.37 0.22 -0.76 16 22 C -0.19 -2.15 9.03 22.35 0.20 -1.95 16 23 C 0.14 1.66 6.69 22.51 0.15 1.81 16 24 O -0.32 -3.31 10.50 -92.74 -0.97 -4.28 16 25 C 0.01 0.04 9.81 113.37 1.11 1.15 16 26 C -0.13 -1.44 9.98 22.35 0.22 -1.21 16 27 C -0.06 -0.89 8.58 22.37 0.19 -0.69 16 28 C 0.15 4.33 6.84 41.71 0.29 4.62 16 29 C -0.10 -2.01 8.32 71.24 0.59 -1.41 16 30 H 0.05 2.11 7.75 -2.38 -0.02 2.09 16 31 H 0.06 2.38 8.14 -2.39 -0.02 2.36 16 32 H 0.03 1.51 6.07 -2.39 -0.01 1.49 16 33 H 0.07 3.88 6.81 -2.39 -0.02 3.87 16 34 H 0.05 2.34 8.14 -2.39 -0.02 2.32 16 35 H 0.27 14.72 8.31 -92.71 -0.77 13.95 16 36 H 0.14 2.35 8.06 -2.91 -0.02 2.33 16 37 H 0.17 0.99 6.29 -2.91 -0.02 0.97 16 38 H 0.07 0.12 7.66 -2.39 -0.02 0.10 16 39 H 0.12 -0.01 8.14 -2.39 -0.02 -0.03 16 40 H 0.07 0.13 7.66 -2.39 -0.02 0.11 16 41 H 0.17 1.08 8.06 -2.91 -0.02 1.06 16 42 H 0.16 1.66 6.79 -2.91 -0.02 1.64 16 43 H 0.12 1.83 7.79 -2.39 -0.02 1.81 16 44 H 0.11 1.54 7.48 -2.39 -0.02 1.52 16 45 H 0.10 2.51 6.28 -2.39 -0.02 2.49 16 Total: -1.00 -75.72 378.16 6.72 -69.00 By element: Atomic # 1 Polarization: 8.22 SS G_CDS: 1.03 Total: 9.25 kcal Atomic # 6 Polarization: -10.49 SS G_CDS: 5.46 Total: -5.03 kcal Atomic # 7 Polarization: -72.35 SS G_CDS: -0.50 Total: -72.85 kcal Atomic # 8 Polarization: -45.57 SS G_CDS: -1.29 Total: -46.87 kcal Atomic # 14 Polarization: 44.47 SS G_CDS: 2.03 Total: 46.50 kcal Total: -75.72 6.72 -69.00 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000188078443.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.787 kcal (2) G-P(sol) polarization free energy of solvation -75.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.934 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.717 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.004 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.216 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds