Wall clock time and date at job start Wed Apr 1 2020 03:42:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.42896 * 109.46932 * 2 1 4 4 C 1.35814 * 116.99849 * 179.97438 * 3 2 1 5 5 C 1.38788 * 119.93608 * 0.02562 * 4 3 2 6 6 C 1.37817 * 120.17998 * 179.97438 * 5 4 3 7 7 C 1.39777 * 120.04314 * 359.97438 * 6 5 4 8 8 C 1.43202 * 120.06493 * 180.02562 * 7 6 5 9 9 N 7.45794 * 162.73102 * 359.92419 * 2 1 3 10 10 C 1.39681 * 119.86779 * 359.77090 * 7 6 5 11 11 C 1.38403 * 119.82772 * 0.50602 * 10 7 6 12 12 N 1.39895 * 120.02357 * 179.74561 * 11 10 7 13 13 C 1.34779 * 120.00222 * 34.70452 * 12 11 10 14 14 O 1.21387 * 119.99674 * 355.51209 * 13 12 11 15 15 C 1.49331 * 119.99916 * 175.51127 * 13 12 11 16 16 O 1.21363 * 120.00528 * 0.02562 * 15 13 12 17 17 N 1.34779 * 119.99916 * 179.97438 * 15 13 12 18 18 C 1.46499 * 120.00249 * 180.02562 * 17 15 13 19 19 H 1.08997 * 109.46761 * 324.99551 * 18 17 15 20 20 C 1.50707 * 109.47196 * 205.00013 * 18 17 15 21 21 H 1.08001 * 119.99940 * 359.97438 * 20 18 17 22 22 C 1.37871 * 120.00227 * 179.97438 * 20 18 17 23 23 N 1.31521 * 119.99831 * 0.02562 * 22 20 18 24 24 Si 1.86795 * 120.00444 * 179.97438 * 22 20 18 25 25 H 1.48497 * 109.47131 * 89.99676 * 24 22 20 26 26 H 1.48497 * 109.47548 * 210.00456 * 24 22 20 27 27 H 1.48502 * 109.46951 * 330.00358 * 24 22 20 28 28 C 1.52995 * 109.47551 * 84.99831 * 18 17 15 29 29 C 1.53003 * 109.46826 * 295.00270 * 28 18 17 30 30 H 1.08999 * 109.47409 * 299.99584 * 1 2 3 31 31 H 1.08996 * 109.47101 * 59.99990 * 1 2 3 32 32 H 1.08998 * 109.47013 * 179.97438 * 1 2 3 33 33 H 1.09002 * 109.47098 * 239.99522 * 2 1 3 34 34 H 1.09006 * 109.46990 * 119.99971 * 2 1 3 35 35 H 1.08002 * 119.91115 * 0.02562 * 5 4 3 36 36 H 1.08002 * 119.98221 * 179.97438 * 6 5 4 37 37 H 1.07998 * 120.08550 * 180.27631 * 10 7 6 38 38 H 0.97006 * 120.00054 * 214.70107 * 12 11 10 39 39 H 0.97002 * 119.99604 * 359.97438 * 17 15 13 40 40 H 0.96997 * 119.99907 * 179.97438 * 23 22 20 41 41 H 1.09007 * 109.47018 * 54.99701 * 28 18 17 42 42 H 1.08992 * 109.47477 * 175.00222 * 28 18 17 43 43 H 1.08997 * 109.47545 * 59.99937 * 29 28 18 44 44 H 1.09003 * 109.47079 * 179.97438 * 29 28 18 45 45 H 1.08996 * 109.47336 * 299.99506 * 29 28 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.3527 1.5252 0.0005 5 6 4.1970 0.4236 0.0005 6 6 5.5640 0.5984 0.0005 7 6 6.1047 1.8873 0.0000 8 6 7.5251 2.0695 -0.0005 9 7 8.6518 2.2139 -0.0029 10 6 5.2568 2.9974 -0.0053 11 6 3.8848 2.8156 0.0005 12 7 3.0318 3.9245 0.0005 13 6 3.3789 5.0418 -0.6686 14 8 4.4663 5.1160 -1.2030 15 6 2.4258 6.1882 -0.7526 16 8 1.3388 6.1142 -0.2180 17 7 2.7731 7.3057 -1.4213 18 6 1.8383 8.4307 -1.5033 19 1 0.8181 8.0517 -1.5634 20 6 2.1433 9.2489 -2.7316 21 1 2.9528 8.9600 -3.3856 22 6 1.3889 10.3662 -3.0206 23 7 0.4035 10.7183 -2.2240 24 14 1.7674 11.3807 -4.5427 25 1 0.9842 10.8601 -5.6919 26 1 1.4017 12.7986 -4.2961 27 1 3.2174 11.2898 -4.8502 28 6 1.9842 9.3070 -0.2577 29 6 1.5547 8.5130 0.9776 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0276 -0.0005 33 1 1.8934 -0.5139 -0.8900 34 1 1.8934 -0.5139 0.8900 35 1 3.7815 -0.5733 -0.0003 36 1 6.2180 -0.2611 0.0009 37 1 5.6708 3.9948 -0.0103 38 1 2.1905 3.8892 0.4821 39 1 3.6423 7.3653 -1.8477 40 1 -0.1270 11.5045 -2.4270 41 1 3.0247 9.6134 -0.1489 42 1 1.3539 10.1904 -0.3590 43 1 2.1850 7.6295 1.0790 44 1 1.6592 9.1371 1.8652 45 1 0.5144 8.2065 0.8690 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000188808647.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:42:49 Heat of formation + Delta-G solvation = -51.893163 kcal Electronic energy + Delta-G solvation = -29507.455307 eV Core-core repulsion = 25297.836655 eV Total energy + Delta-G solvation = -4209.618652 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.26746 -40.04735 -38.59092 -37.99068 -36.41983 -35.51359 -34.77792 -32.45744 -32.23700 -31.03709 -30.83946 -29.80210 -27.29908 -25.12743 -24.69277 -23.46376 -22.98129 -22.04344 -20.31868 -19.59031 -19.44134 -18.65380 -18.29618 -16.77580 -16.63747 -16.56105 -16.15820 -15.58648 -15.53104 -15.03263 -14.79553 -14.40878 -14.28696 -14.15992 -13.97678 -13.77656 -13.49269 -13.34101 -13.03540 -12.87509 -12.76360 -12.52504 -12.31643 -12.19959 -12.08387 -11.62912 -11.60161 -11.34412 -11.17980 -11.10647 -10.97120 -10.88994 -10.65404 -10.36983 -10.28401 -9.71590 -9.16718 -9.13543 -9.02763 -8.57783 -8.23898 -8.05202 -6.18842 -4.28507 0.46358 0.80656 1.76675 2.42359 2.57398 2.62675 2.76387 3.23223 3.30202 3.33126 3.52463 3.63576 3.71649 4.03084 4.30780 4.32721 4.45954 4.51310 4.63791 4.74002 4.81293 5.01428 5.07157 5.13612 5.21183 5.39020 5.42131 5.47291 5.64576 5.74941 5.88383 6.01755 6.29844 6.32325 6.34626 6.53456 6.86014 6.92871 6.97875 7.10134 7.14353 7.25483 7.32213 7.47011 7.61580 7.75422 7.85132 8.06580 8.41364 8.59827 8.83982 9.38436 10.86541 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.011579 B = 0.002674 C = 0.002367 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2417.678211 B =10466.962790 C =11824.952094 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.054 3.946 3 O -0.307 6.307 4 C 0.142 3.858 5 C -0.196 4.196 6 C -0.042 4.042 7 C -0.052 4.052 8 C 0.262 3.738 9 N -0.421 5.421 10 C -0.037 4.037 11 C 0.119 3.881 12 N -0.641 5.641 13 C 0.508 3.492 14 O -0.508 6.508 15 C 0.496 3.504 16 O -0.526 6.526 17 N -0.667 5.667 18 C 0.268 3.732 19 H 0.055 0.945 20 C -0.537 4.537 21 H 0.064 0.936 22 C 0.068 3.932 23 N -0.882 5.882 24 Si 0.903 3.097 25 H -0.279 1.279 26 H -0.285 1.285 27 H -0.272 1.272 28 C -0.129 4.129 29 C -0.139 4.139 30 H 0.069 0.931 31 H 0.069 0.931 32 H 0.079 0.921 33 H 0.066 0.934 34 H 0.066 0.934 35 H 0.143 0.857 36 H 0.137 0.863 37 H 0.159 0.841 38 H 0.428 0.572 39 H 0.402 0.598 40 H 0.266 0.734 41 H 0.035 0.965 42 H 0.104 0.896 43 H 0.035 0.965 44 H 0.026 0.974 45 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.299 -22.742 6.682 23.815 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.021 4.021 3 O -0.219 6.219 4 C 0.093 3.907 5 C -0.215 4.215 6 C -0.063 4.063 7 C -0.056 4.056 8 C -0.053 4.053 9 N -0.097 5.097 10 C -0.060 4.060 11 C 0.024 3.976 12 N -0.289 5.289 13 C 0.291 3.709 14 O -0.382 6.382 15 C 0.274 3.726 16 O -0.405 6.405 17 N -0.316 5.316 18 C 0.167 3.833 19 H 0.073 0.927 20 C -0.575 4.575 21 H 0.082 0.918 22 C -0.135 4.135 23 N -0.519 5.519 24 Si 0.731 3.269 25 H -0.205 1.205 26 H -0.210 1.210 27 H -0.197 1.197 28 C -0.168 4.168 29 C -0.196 4.196 30 H 0.088 0.912 31 H 0.088 0.912 32 H 0.098 0.902 33 H 0.084 0.916 34 H 0.084 0.916 35 H 0.161 0.839 36 H 0.155 0.845 37 H 0.176 0.824 38 H 0.267 0.733 39 H 0.236 0.764 40 H 0.076 0.924 41 H 0.054 0.946 42 H 0.122 0.878 43 H 0.054 0.946 44 H 0.045 0.955 45 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 3.660 -22.109 6.656 23.377 hybrid contribution -0.212 0.248 -0.795 0.859 sum 3.448 -21.860 5.861 22.893 Atomic orbital electron populations 1.21800 0.92292 1.03005 1.04113 1.22907 0.96324 0.81190 1.01678 1.86097 1.17966 1.30201 1.87678 1.19022 0.83254 0.92398 0.96048 1.20959 0.93325 0.98020 1.09192 1.20915 0.94560 0.95504 0.95359 1.15702 0.84703 0.93997 1.11205 1.25495 0.92429 0.93811 0.93535 1.81250 1.12039 1.07099 1.09297 1.21221 0.90261 0.99919 0.94610 1.16805 0.89566 0.84204 1.07061 1.43030 1.23580 1.11375 1.50908 1.21083 0.87877 0.84058 0.77865 1.90724 1.22316 1.80807 1.44362 1.19502 0.87061 0.83858 0.82181 1.90755 1.22229 1.81321 1.46172 1.46471 1.20939 1.14646 1.49511 1.19022 0.89148 0.80993 0.94101 0.92697 1.21209 1.17575 1.10725 1.08032 0.91757 1.24866 0.94631 0.96996 0.97025 1.69883 1.19155 1.26097 1.36776 0.86410 0.78809 0.79184 0.82532 1.20499 1.21025 1.19721 1.21966 1.00201 1.01368 0.93266 1.21857 1.01361 0.98727 0.97679 0.91199 0.91157 0.90230 0.91572 0.91581 0.83912 0.84482 0.82389 0.73273 0.76366 0.92437 0.94635 0.87838 0.94615 0.95464 0.92910 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.79 10.28 37.16 0.38 -0.41 16 2 C 0.05 0.30 5.46 37.16 0.20 0.50 16 3 O -0.31 -2.78 9.68 -19.16 -0.19 -2.96 16 4 C 0.14 1.32 6.71 -38.88 -0.26 1.06 16 5 C -0.20 -1.32 9.01 -39.53 -0.36 -1.68 16 6 C -0.04 -0.30 9.74 -39.16 -0.38 -0.68 16 7 C -0.05 -0.51 5.74 -106.86 -0.61 -1.12 16 8 C 0.26 3.04 15.32 -22.48 -0.34 2.70 16 9 N -0.42 -5.82 18.54 41.83 0.78 -5.04 16 10 C -0.04 -0.43 8.40 -38.98 -0.33 -0.76 16 11 C 0.12 1.37 6.31 -83.62 -0.53 0.84 16 12 N -0.64 -8.39 5.17 -10.23 -0.05 -8.45 16 13 C 0.51 8.13 7.73 -11.64 -0.09 8.04 16 14 O -0.51 -8.66 13.89 5.46 0.08 -8.58 16 15 C 0.50 9.37 6.45 -11.64 -0.08 9.30 16 16 O -0.53 -10.80 13.62 5.49 0.07 -10.72 16 17 N -0.67 -13.68 5.01 -55.40 -0.28 -13.96 16 18 C 0.27 6.47 2.24 -69.08 -0.15 6.31 16 19 H 0.06 1.50 7.58 -51.93 -0.39 1.11 16 20 C -0.54 -13.84 8.73 -34.44 -0.30 -14.14 16 21 H 0.06 1.61 7.74 -52.49 -0.41 1.21 16 22 C 0.07 1.78 5.29 -17.82 -0.09 1.69 16 23 N -0.88 -23.87 11.29 55.43 0.63 -23.24 16 24 Si 0.90 20.30 29.54 -169.99 -5.02 15.28 16 25 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 26 H -0.28 -6.37 7.11 56.52 0.40 -5.96 16 27 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 28 C -0.13 -3.00 5.45 -26.73 -0.15 -3.15 16 29 C -0.14 -2.90 8.51 37.16 0.32 -2.58 16 30 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.08 0.25 8.14 -51.93 -0.42 -0.17 16 33 H 0.07 0.29 7.65 -51.93 -0.40 -0.11 16 34 H 0.07 0.25 7.65 -51.93 -0.40 -0.15 16 35 H 0.14 0.55 6.27 -52.49 -0.33 0.22 16 36 H 0.14 0.63 8.06 -52.49 -0.42 0.21 16 37 H 0.16 2.05 6.19 -52.49 -0.32 1.73 16 38 H 0.43 5.26 8.04 -40.82 -0.33 4.93 16 39 H 0.40 7.76 8.01 -40.82 -0.33 7.44 16 40 H 0.27 6.84 8.31 -40.82 -0.34 6.51 16 41 H 0.03 0.80 8.14 -51.93 -0.42 0.37 16 42 H 0.10 2.66 5.95 -51.93 -0.31 2.35 16 43 H 0.03 0.71 5.64 -51.93 -0.29 0.42 16 44 H 0.03 0.51 8.14 -51.93 -0.42 0.08 16 45 H 0.05 1.15 7.85 -51.93 -0.41 0.75 16 LS Contribution 385.09 15.07 5.80 5.80 Total: -1.00 -30.03 385.09 -6.54 -36.57 By element: Atomic # 1 Polarization: 14.96 SS G_CDS: -5.58 Total: 9.38 kcal Atomic # 6 Polarization: 8.70 SS G_CDS: -2.77 Total: 5.93 kcal Atomic # 7 Polarization: -51.76 SS G_CDS: 1.07 Total: -50.69 kcal Atomic # 8 Polarization: -22.23 SS G_CDS: -0.03 Total: -22.27 kcal Atomic # 14 Polarization: 20.30 SS G_CDS: -5.02 Total: 15.28 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -30.03 -6.54 -36.57 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000188808647.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.322 kcal (2) G-P(sol) polarization free energy of solvation -30.035 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.356 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.537 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.572 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.893 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds