Wall clock time and date at job start Wed Apr 1 2020 03:42:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.42896 * 109.46932 * 2 1 4 4 C 1.35814 * 116.99849 * 179.97438 * 3 2 1 5 5 C 1.38788 * 119.93608 * 0.02562 * 4 3 2 6 6 C 1.37817 * 120.17998 * 179.97438 * 5 4 3 7 7 C 1.39777 * 120.04314 * 359.97438 * 6 5 4 8 8 C 1.43202 * 120.06493 * 180.02562 * 7 6 5 9 9 N 7.45794 * 162.73102 * 359.92419 * 2 1 3 10 10 C 1.39681 * 119.86779 * 359.77090 * 7 6 5 11 11 C 1.38403 * 119.82772 * 0.50602 * 10 7 6 12 12 N 1.39895 * 120.02357 * 179.74561 * 11 10 7 13 13 C 1.34779 * 120.00222 * 34.70452 * 12 11 10 14 14 O 1.21387 * 119.99674 * 355.51209 * 13 12 11 15 15 C 1.49331 * 119.99916 * 175.51127 * 13 12 11 16 16 O 1.21363 * 120.00528 * 0.02562 * 15 13 12 17 17 N 1.34779 * 119.99916 * 179.97438 * 15 13 12 18 18 C 1.46499 * 120.00249 * 180.02562 * 17 15 13 19 19 H 1.08997 * 109.46761 * 324.99551 * 18 17 15 20 20 C 1.50707 * 109.47196 * 205.00013 * 18 17 15 21 21 H 1.08001 * 119.99940 * 359.97438 * 20 18 17 22 22 C 1.37871 * 120.00227 * 179.97438 * 20 18 17 23 23 N 1.31521 * 119.99831 * 0.02562 * 22 20 18 24 24 Si 1.86795 * 120.00444 * 179.97438 * 22 20 18 25 25 H 1.48497 * 109.47131 * 89.99676 * 24 22 20 26 26 H 1.48497 * 109.47548 * 210.00456 * 24 22 20 27 27 H 1.48502 * 109.46951 * 330.00358 * 24 22 20 28 28 C 1.52995 * 109.47551 * 84.99831 * 18 17 15 29 29 C 1.53003 * 109.46826 * 295.00270 * 28 18 17 30 30 H 1.08999 * 109.47409 * 299.99584 * 1 2 3 31 31 H 1.08996 * 109.47101 * 59.99990 * 1 2 3 32 32 H 1.08998 * 109.47013 * 179.97438 * 1 2 3 33 33 H 1.09002 * 109.47098 * 239.99522 * 2 1 3 34 34 H 1.09006 * 109.46990 * 119.99971 * 2 1 3 35 35 H 1.08002 * 119.91115 * 0.02562 * 5 4 3 36 36 H 1.08002 * 119.98221 * 179.97438 * 6 5 4 37 37 H 1.07998 * 120.08550 * 180.27631 * 10 7 6 38 38 H 0.97006 * 120.00054 * 214.70107 * 12 11 10 39 39 H 0.97002 * 119.99604 * 359.97438 * 17 15 13 40 40 H 0.96997 * 119.99907 * 179.97438 * 23 22 20 41 41 H 1.09007 * 109.47018 * 54.99701 * 28 18 17 42 42 H 1.08992 * 109.47477 * 175.00222 * 28 18 17 43 43 H 1.08997 * 109.47545 * 59.99937 * 29 28 18 44 44 H 1.09003 * 109.47079 * 179.97438 * 29 28 18 45 45 H 1.08996 * 109.47336 * 299.99506 * 29 28 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.3527 1.5252 0.0005 5 6 4.1970 0.4236 0.0005 6 6 5.5640 0.5984 0.0005 7 6 6.1047 1.8873 0.0000 8 6 7.5251 2.0695 -0.0005 9 7 8.6518 2.2139 -0.0029 10 6 5.2568 2.9974 -0.0053 11 6 3.8848 2.8156 0.0005 12 7 3.0318 3.9245 0.0005 13 6 3.3789 5.0418 -0.6686 14 8 4.4663 5.1160 -1.2030 15 6 2.4258 6.1882 -0.7526 16 8 1.3388 6.1142 -0.2180 17 7 2.7731 7.3057 -1.4213 18 6 1.8383 8.4307 -1.5033 19 1 0.8181 8.0517 -1.5634 20 6 2.1433 9.2489 -2.7316 21 1 2.9528 8.9600 -3.3856 22 6 1.3889 10.3662 -3.0206 23 7 0.4035 10.7183 -2.2240 24 14 1.7674 11.3807 -4.5427 25 1 0.9842 10.8601 -5.6919 26 1 1.4017 12.7986 -4.2961 27 1 3.2174 11.2898 -4.8502 28 6 1.9842 9.3070 -0.2577 29 6 1.5547 8.5130 0.9776 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0276 -0.0005 33 1 1.8934 -0.5139 -0.8900 34 1 1.8934 -0.5139 0.8900 35 1 3.7815 -0.5733 -0.0003 36 1 6.2180 -0.2611 0.0009 37 1 5.6708 3.9948 -0.0103 38 1 2.1905 3.8892 0.4821 39 1 3.6423 7.3653 -1.8477 40 1 -0.1270 11.5045 -2.4270 41 1 3.0247 9.6134 -0.1489 42 1 1.3539 10.1904 -0.3590 43 1 2.1850 7.6295 1.0790 44 1 1.6592 9.1371 1.8652 45 1 0.5144 8.2065 0.8690 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000188808647.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:42:48 Heat of formation + Delta-G solvation = -71.523176 kcal Electronic energy + Delta-G solvation = -29508.306529 eV Core-core repulsion = 25297.836655 eV Total energy + Delta-G solvation = -4210.469874 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.27590 -41.14956 -39.81904 -38.91998 -37.40622 -37.13708 -35.94887 -34.30746 -32.81986 -32.75014 -31.59206 -30.61742 -29.15505 -26.41449 -25.47121 -24.82292 -24.04175 -22.97082 -21.76273 -21.17700 -20.56565 -19.64472 -19.22720 -18.19105 -17.91820 -17.37656 -17.14379 -17.01840 -16.90542 -16.50221 -15.88686 -15.57549 -15.53772 -15.05126 -14.91080 -14.83432 -14.67104 -14.60934 -14.17996 -13.85843 -13.77421 -13.48827 -13.42224 -13.21179 -13.16711 -13.13108 -12.94141 -12.85069 -12.70056 -12.50800 -12.16194 -12.10574 -12.00538 -11.60042 -11.57524 -11.56326 -11.10298 -10.62420 -10.51971 -9.83961 -9.79956 -9.04395 -8.18419 -6.35188 -0.29321 -0.03376 0.52978 1.29010 1.45104 1.46521 1.56497 1.62245 1.82560 2.07682 2.20852 2.39487 2.69050 2.79296 2.92246 3.11551 3.52058 3.72388 3.85049 4.05392 4.17356 4.19938 4.29801 4.47232 4.49791 4.55671 4.56303 4.71701 4.72550 4.90817 5.03033 5.03080 5.05339 5.14301 5.22000 5.24230 5.33425 5.37457 5.40512 5.52794 5.56733 5.68298 5.79518 5.96778 6.12168 6.27420 6.44486 6.55507 6.67690 6.80555 7.11880 7.36857 8.86743 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.011579 B = 0.002674 C = 0.002367 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2417.678211 B =10466.962790 C =11824.952094 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.043 3.957 3 O -0.326 6.326 4 C 0.151 3.849 5 C -0.182 4.182 6 C -0.017 4.017 7 C -0.064 4.064 8 C 0.284 3.716 9 N -0.467 5.467 10 C -0.044 4.044 11 C 0.086 3.914 12 N -0.626 5.626 13 C 0.516 3.484 14 O -0.522 6.522 15 C 0.496 3.504 16 O -0.544 6.544 17 N -0.671 5.671 18 C 0.277 3.723 19 H 0.016 0.984 20 C -0.554 4.554 21 H 0.067 0.933 22 C 0.022 3.978 23 N -0.909 5.909 24 Si 0.967 3.033 25 H -0.277 1.277 26 H -0.281 1.281 27 H -0.266 1.266 28 C -0.123 4.123 29 C -0.126 4.126 30 H 0.060 0.940 31 H 0.053 0.947 32 H 0.103 0.897 33 H 0.084 0.916 34 H 0.091 0.909 35 H 0.184 0.816 36 H 0.173 0.827 37 H 0.136 0.864 38 H 0.431 0.569 39 H 0.408 0.592 40 H 0.267 0.733 41 H 0.039 0.961 42 H 0.078 0.922 43 H 0.041 0.959 44 H 0.048 0.952 45 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.792 -25.761 6.737 26.773 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.030 4.030 3 O -0.240 6.240 4 C 0.102 3.898 5 C -0.200 4.200 6 C -0.037 4.037 7 C -0.068 4.068 8 C -0.030 4.030 9 N -0.143 5.143 10 C -0.067 4.067 11 C -0.008 4.008 12 N -0.273 5.273 13 C 0.298 3.702 14 O -0.398 6.398 15 C 0.276 3.724 16 O -0.423 6.423 17 N -0.321 5.321 18 C 0.175 3.825 19 H 0.034 0.966 20 C -0.592 4.592 21 H 0.085 0.915 22 C -0.179 4.179 23 N -0.547 5.547 24 Si 0.792 3.208 25 H -0.203 1.203 26 H -0.207 1.207 27 H -0.190 1.190 28 C -0.162 4.162 29 C -0.184 4.184 30 H 0.079 0.921 31 H 0.072 0.928 32 H 0.121 0.879 33 H 0.102 0.898 34 H 0.109 0.891 35 H 0.201 0.799 36 H 0.190 0.810 37 H 0.153 0.847 38 H 0.271 0.729 39 H 0.243 0.757 40 H 0.076 0.924 41 H 0.058 0.942 42 H 0.097 0.903 43 H 0.060 0.940 44 H 0.067 0.933 45 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 4.159 -25.184 6.730 26.398 hybrid contribution -0.471 1.009 -0.760 1.348 sum 3.688 -24.175 5.970 25.173 Atomic orbital electron populations 1.21846 0.92471 1.04168 1.02854 1.23256 0.96286 0.79762 1.03730 1.86098 1.17790 1.32736 1.87331 1.19118 0.83941 0.92010 0.94753 1.21368 0.92680 0.98859 1.07133 1.21317 0.95233 0.95122 0.92060 1.15723 0.83387 0.94846 1.12858 1.25736 0.92606 0.92526 0.92179 1.81267 1.13418 1.08461 1.11199 1.21024 0.90662 0.99614 0.95422 1.16939 0.89319 0.84446 1.10096 1.42826 1.23779 1.11054 1.49657 1.20309 0.87012 0.84121 0.78745 1.90729 1.22441 1.81097 1.45500 1.19968 0.87290 0.84165 0.81012 1.90737 1.23226 1.81769 1.46581 1.46238 1.20681 1.14665 1.50511 1.18627 0.87879 0.81779 0.94250 0.96636 1.21528 1.17730 1.11163 1.08770 0.91465 1.25662 0.94427 0.98048 0.99725 1.70009 1.19928 1.26518 1.38259 0.85415 0.78802 0.77580 0.78987 1.20260 1.20683 1.19020 1.21819 0.99810 1.00564 0.94045 1.21710 1.00282 0.98926 0.97447 0.92100 0.92803 0.87855 0.89764 0.89056 0.79911 0.80990 0.84667 0.72946 0.75676 0.92371 0.94233 0.90330 0.94037 0.93264 0.94481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.26 10.28 71.98 0.74 -0.52 16 2 C 0.04 0.32 5.46 71.98 0.39 0.71 16 3 O -0.33 -5.12 9.68 -91.47 -0.89 -6.00 16 4 C 0.15 2.40 6.71 22.73 0.15 2.55 16 5 C -0.18 -1.60 9.01 22.30 0.20 -1.40 16 6 C -0.02 -0.16 9.74 22.54 0.22 0.05 16 7 C -0.06 -1.13 5.74 -21.31 -0.12 -1.25 16 8 C 0.28 6.31 15.32 88.33 1.35 7.66 16 9 N -0.47 -12.77 18.54 19.00 0.35 -12.42 16 10 C -0.04 -1.00 8.40 22.66 0.19 -0.81 16 11 C 0.09 1.89 6.31 38.22 0.24 2.13 16 12 N -0.63 -16.39 5.17 -304.61 -1.57 -17.96 16 13 C 0.52 16.83 7.73 87.23 0.67 17.50 16 14 O -0.52 -18.17 13.89 -3.36 -0.05 -18.22 16 15 C 0.50 19.28 6.45 87.23 0.56 19.84 16 16 O -0.54 -22.99 13.62 -3.29 -0.04 -23.03 16 17 N -0.67 -28.41 5.01 -447.55 -2.24 -30.66 16 18 C 0.28 13.84 2.24 44.25 0.10 13.94 16 19 H 0.02 0.90 7.58 -2.39 -0.02 0.89 16 20 C -0.55 -29.17 8.73 25.60 0.22 -28.95 16 21 H 0.07 3.41 7.74 -2.91 -0.02 3.39 16 22 C 0.02 1.18 5.29 84.65 0.45 1.63 16 23 N -0.91 -50.44 11.29 21.45 0.24 -50.20 16 24 Si 0.97 41.92 29.54 68.60 2.03 43.95 16 25 H -0.28 -11.84 7.11 99.48 0.71 -11.13 16 26 H -0.28 -11.97 7.11 99.48 0.71 -11.26 16 27 H -0.27 -11.16 7.11 99.48 0.71 -10.45 16 28 C -0.12 -5.89 5.45 30.59 0.17 -5.73 16 29 C -0.13 -5.34 8.51 71.98 0.61 -4.73 16 30 H 0.06 0.59 8.14 -2.39 -0.02 0.58 16 31 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 32 H 0.10 0.33 8.14 -2.39 -0.02 0.31 16 33 H 0.08 0.34 7.65 -2.39 -0.02 0.32 16 34 H 0.09 0.24 7.65 -2.38 -0.02 0.22 16 35 H 0.18 0.20 6.27 -2.91 -0.02 0.18 16 36 H 0.17 0.60 8.06 -2.91 -0.02 0.57 16 37 H 0.14 3.65 6.19 -2.91 -0.02 3.63 16 38 H 0.43 10.61 8.04 -92.70 -0.75 9.87 16 39 H 0.41 16.20 8.01 -92.71 -0.74 15.46 16 40 H 0.27 14.03 8.31 -92.71 -0.77 13.26 16 41 H 0.04 1.81 8.14 -2.38 -0.02 1.79 16 42 H 0.08 4.17 5.95 -2.39 -0.01 4.16 16 43 H 0.04 1.67 5.64 -2.39 -0.01 1.66 16 44 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 45 H 0.04 1.65 7.85 -2.39 -0.02 1.63 16 Total: -1.00 -67.97 385.09 3.56 -64.40 By element: Atomic # 1 Polarization: 27.90 SS G_CDS: -0.42 Total: 27.48 kcal Atomic # 6 Polarization: 16.50 SS G_CDS: 6.16 Total: 22.65 kcal Atomic # 7 Polarization: -108.01 SS G_CDS: -3.22 Total: -111.23 kcal Atomic # 8 Polarization: -46.28 SS G_CDS: -0.98 Total: -47.25 kcal Atomic # 14 Polarization: 41.92 SS G_CDS: 2.03 Total: 43.95 kcal Total: -67.97 3.56 -64.40 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000188808647.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.120 kcal (2) G-P(sol) polarization free energy of solvation -67.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.088 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.564 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.403 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.523 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds