Wall clock time and date at job start Wed Apr 1 2020 03:42:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42900 * 109.46870 * 2 1 4 4 C 1.35812 * 117.00105 * 180.02562 * 3 2 1 5 5 C 1.38785 * 119.93137 * 0.02562 * 4 3 2 6 6 C 1.37826 * 120.17743 * 179.97438 * 5 4 3 7 7 C 1.39775 * 120.04432 * 359.97438 * 6 5 4 8 8 C 1.43196 * 120.06381 * 180.02562 * 7 6 5 9 9 N 7.45806 * 162.73004 * 359.94705 * 2 1 3 10 10 C 1.39688 * 119.86619 * 359.75056 * 7 6 5 11 11 C 1.38396 * 119.82629 * 0.52029 * 10 7 6 12 12 N 1.39898 * 120.02405 * 179.74815 * 11 10 7 13 13 C 1.34776 * 119.99948 * 20.23563 * 12 11 10 14 14 O 1.21388 * 119.99955 * 5.66316 * 13 12 11 15 15 C 1.49334 * 120.00201 * 185.66675 * 13 12 11 16 16 O 1.21360 * 119.99915 * 359.97438 * 15 13 12 17 17 N 1.34776 * 120.00240 * 179.97438 * 15 13 12 18 18 C 1.46498 * 120.00532 * 179.97438 * 17 15 13 19 19 H 1.09005 * 109.46744 * 35.00460 * 18 17 15 20 20 C 1.50697 * 109.47434 * 155.00084 * 18 17 15 21 21 H 1.08003 * 120.00097 * 5.68467 * 20 18 17 22 22 C 1.37879 * 119.99897 * 185.68746 * 20 18 17 23 23 N 1.31522 * 119.99911 * 196.75541 * 22 20 18 24 24 Si 1.86797 * 120.00229 * 16.75341 * 22 20 18 25 25 H 1.48503 * 109.47179 * 179.97438 * 24 22 20 26 26 H 1.48498 * 109.47200 * 300.00141 * 24 22 20 27 27 H 1.48501 * 109.47164 * 60.00496 * 24 22 20 28 28 C 1.52997 * 109.47651 * 275.00691 * 18 17 15 29 29 C 1.53000 * 109.47312 * 66.10758 * 28 18 17 30 30 H 1.09007 * 109.47444 * 59.99676 * 1 2 3 31 31 H 1.08997 * 109.47240 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47181 * 299.99877 * 1 2 3 33 33 H 1.08994 * 109.47125 * 240.00844 * 2 1 3 34 34 H 1.08990 * 109.47437 * 120.00087 * 2 1 3 35 35 H 1.07993 * 119.91767 * 0.02562 * 5 4 3 36 36 H 1.07997 * 119.97855 * 180.02562 * 6 5 4 37 37 H 1.08006 * 120.08361 * 180.29436 * 10 7 6 38 38 H 0.96998 * 120.00703 * 200.22551 * 12 11 10 39 39 H 0.97005 * 119.99769 * 0.02562 * 17 15 13 40 40 H 0.96996 * 119.99766 * 354.92951 * 23 22 20 41 41 H 1.09002 * 109.47417 * 186.11195 * 28 18 17 42 42 H 1.09003 * 109.46724 * 306.11358 * 28 18 17 43 43 H 1.09002 * 109.47236 * 300.00547 * 29 28 18 44 44 H 1.09003 * 109.47223 * 60.00011 * 29 28 18 45 45 H 1.08999 * 109.47355 * 180.02562 * 29 28 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3527 1.5253 -0.0005 5 6 4.1968 0.4237 -0.0016 6 6 5.5640 0.5985 -0.0027 7 6 6.1047 1.8875 -0.0033 8 6 7.5250 2.0696 -0.0049 9 7 8.6518 2.2141 -0.0020 10 6 5.2567 2.9975 -0.0080 11 6 3.8848 2.8157 -0.0012 12 7 3.0317 3.9245 -0.0006 13 6 3.4870 5.1252 -0.4100 14 8 4.6037 5.2244 -0.8754 15 6 2.6177 6.3336 -0.2909 16 8 1.5011 6.2344 0.1741 17 7 3.0731 7.5344 -0.6998 18 6 2.2202 8.7198 -0.5835 19 1 1.6124 8.6430 0.3181 20 6 3.0823 9.9533 -0.5045 21 1 4.1521 9.8733 -0.6296 22 6 2.5054 11.1839 -0.2724 23 7 3.1797 12.2844 -0.5252 24 14 0.7661 11.2880 0.4009 25 1 0.3817 12.7135 0.5606 26 1 -0.1702 10.6249 -0.5419 27 1 0.7044 10.6085 1.7199 28 6 1.3071 8.8133 -1.8075 29 6 0.3278 7.6378 -1.8043 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.8933 -0.5137 -0.8900 34 1 1.8934 -0.5138 0.8899 35 1 3.7815 -0.5731 -0.0024 36 1 6.2179 -0.2610 -0.0039 37 1 5.6708 3.9950 -0.0133 38 1 2.1126 3.8293 0.2942 39 1 3.9655 7.6136 -1.0718 40 1 4.1070 12.2316 -0.8046 41 1 0.7506 9.7499 -1.7750 42 1 1.9109 8.7806 -2.7145 43 1 0.8843 6.7011 -1.8368 44 1 -0.2759 7.6703 -0.8973 45 1 -0.3224 7.7041 -2.6766 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000188808667.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:42:52 Heat of formation + Delta-G solvation = -47.944393 kcal Electronic energy + Delta-G solvation = -29595.461657 eV Core-core repulsion = 25386.014236 eV Total energy + Delta-G solvation = -4209.447421 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.40198 -40.18463 -38.75852 -38.07143 -36.45311 -35.71221 -34.91611 -32.52704 -32.30325 -31.54320 -30.89496 -29.88268 -27.54868 -25.21641 -24.75447 -23.44358 -22.55912 -22.15179 -20.50558 -19.75304 -19.62088 -18.72831 -18.46476 -17.32715 -16.89848 -16.68911 -16.37407 -15.91549 -15.57334 -15.16961 -14.83394 -14.52311 -14.25759 -14.12547 -13.99145 -13.73421 -13.51874 -13.41996 -13.08422 -12.92095 -12.76231 -12.58099 -12.53119 -12.43123 -12.39809 -12.21020 -11.84063 -11.69115 -11.19425 -11.16752 -10.99771 -10.89842 -10.77235 -10.51564 -9.97205 -9.67831 -9.30665 -9.15185 -9.04195 -8.41145 -8.35349 -8.20118 -6.64809 -4.29252 0.42427 0.75847 1.64131 2.33340 2.52845 2.60070 2.68166 3.32911 3.39548 3.42444 3.53922 3.59529 3.62815 3.91323 4.27019 4.36064 4.40832 4.45290 4.58904 4.71528 4.75378 4.85130 4.99061 5.09706 5.15035 5.34086 5.35071 5.40907 5.60288 5.69420 5.85339 5.95042 5.95962 5.99077 6.13982 6.29190 6.53214 6.66687 6.75893 6.80891 6.87868 6.92675 7.13721 7.24542 7.31531 7.46724 7.66426 8.13899 8.22514 8.44266 8.73640 9.40381 10.76519 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.012115 B = 0.002847 C = 0.002378 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2310.557858 B = 9832.720859 C =11771.468133 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.055 3.945 3 O -0.311 6.311 4 C 0.134 3.866 5 C -0.191 4.191 6 C -0.048 4.048 7 C -0.046 4.046 8 C 0.262 3.738 9 N -0.419 5.419 10 C -0.057 4.057 11 C 0.125 3.875 12 N -0.636 5.636 13 C 0.507 3.493 14 O -0.503 6.503 15 C 0.496 3.504 16 O -0.528 6.528 17 N -0.659 5.659 18 C 0.246 3.754 19 H 0.047 0.953 20 C -0.621 4.621 21 H 0.065 0.935 22 C 0.041 3.959 23 N -0.894 5.894 24 Si 1.040 2.960 25 H -0.282 1.282 26 H -0.268 1.268 27 H -0.279 1.279 28 C -0.141 4.141 29 C -0.145 4.145 30 H 0.069 0.931 31 H 0.079 0.921 32 H 0.069 0.931 33 H 0.066 0.934 34 H 0.066 0.934 35 H 0.143 0.857 36 H 0.137 0.863 37 H 0.171 0.829 38 H 0.430 0.570 39 H 0.407 0.593 40 H 0.271 0.729 41 H 0.073 0.927 42 H 0.054 0.946 43 H 0.045 0.955 44 H 0.053 0.947 45 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.351 -27.609 0.942 27.965 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.020 4.020 3 O -0.224 6.224 4 C 0.085 3.915 5 C -0.210 4.210 6 C -0.070 4.070 7 C -0.050 4.050 8 C -0.054 4.054 9 N -0.095 5.095 10 C -0.079 4.079 11 C 0.029 3.971 12 N -0.282 5.282 13 C 0.291 3.709 14 O -0.377 6.377 15 C 0.274 3.726 16 O -0.406 6.406 17 N -0.308 5.308 18 C 0.143 3.857 19 H 0.065 0.935 20 C -0.659 4.659 21 H 0.083 0.917 22 C -0.166 4.166 23 N -0.526 5.526 24 Si 0.867 3.133 25 H -0.208 1.208 26 H -0.194 1.194 27 H -0.205 1.205 28 C -0.179 4.179 29 C -0.203 4.203 30 H 0.088 0.912 31 H 0.098 0.902 32 H 0.088 0.912 33 H 0.084 0.916 34 H 0.085 0.915 35 H 0.161 0.839 36 H 0.155 0.845 37 H 0.188 0.812 38 H 0.269 0.731 39 H 0.242 0.758 40 H 0.081 0.919 41 H 0.092 0.908 42 H 0.073 0.927 43 H 0.064 0.936 44 H 0.072 0.928 45 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -4.010 -26.016 1.345 26.357 hybrid contribution 0.948 -1.451 -0.496 1.803 sum -3.062 -27.467 0.849 27.650 Atomic orbital electron populations 1.21803 0.92323 1.03057 1.04025 1.22893 0.96248 0.81124 1.01734 1.86044 1.18025 1.30329 1.87982 1.18854 0.83210 0.92203 0.97271 1.20933 0.93307 0.97942 1.08829 1.20916 0.94561 0.95544 0.95945 1.15726 0.84755 0.93963 1.10552 1.25494 0.92432 0.93828 0.93621 1.81259 1.12034 1.07063 1.09135 1.21580 0.90146 1.00773 0.95442 1.16884 0.89731 0.84091 1.06392 1.43039 1.15956 1.06211 1.63002 1.20949 0.87652 0.84750 0.77562 1.90666 1.19985 1.85404 1.41655 1.19569 0.86974 0.84490 0.81523 1.90748 1.19261 1.85392 1.45233 1.46215 1.19597 1.06674 1.58342 1.19278 0.89978 0.81909 0.94521 0.93517 1.22071 0.95087 0.91873 1.56872 0.91726 1.25697 1.06007 0.91444 0.93502 1.70869 1.11467 1.29351 1.40956 0.84118 0.75222 0.76428 0.77524 1.20796 1.19443 1.20516 1.22384 0.97388 0.98182 0.99984 1.21905 0.99197 0.98926 1.00244 0.91235 0.90192 0.91196 0.91567 0.91545 0.83912 0.84504 0.81171 0.73097 0.75828 0.91915 0.90823 0.92706 0.93584 0.92808 0.94687 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.67 10.28 37.16 0.38 -0.28 16 2 C 0.05 0.27 5.46 37.16 0.20 0.47 16 3 O -0.31 -2.57 9.48 -19.15 -0.18 -2.75 16 4 C 0.13 1.18 6.71 -38.88 -0.26 0.92 16 5 C -0.19 -1.24 9.01 -39.53 -0.36 -1.59 16 6 C -0.05 -0.34 9.74 -39.16 -0.38 -0.72 16 7 C -0.05 -0.45 5.74 -106.86 -0.61 -1.06 16 8 C 0.26 3.09 15.32 -22.47 -0.34 2.74 16 9 N -0.42 -5.90 18.54 41.84 0.78 -5.12 16 10 C -0.06 -0.66 8.48 -38.98 -0.33 -0.99 16 11 C 0.12 1.40 6.50 -83.62 -0.54 0.85 16 12 N -0.64 -7.98 5.30 -10.23 -0.05 -8.04 16 13 C 0.51 7.78 7.72 -11.64 -0.09 7.69 16 14 O -0.50 -8.28 13.40 5.46 0.07 -8.20 16 15 C 0.50 8.91 6.51 -11.64 -0.08 8.83 16 16 O -0.53 -10.10 13.63 5.49 0.07 -10.02 16 17 N -0.66 -13.08 5.02 -55.41 -0.28 -13.36 16 18 C 0.25 5.60 1.81 -69.09 -0.13 5.47 16 19 H 0.05 1.13 6.24 -51.93 -0.32 0.81 16 20 C -0.62 -16.36 9.01 -34.44 -0.31 -16.67 16 21 H 0.06 1.80 7.96 -52.48 -0.42 1.39 16 22 C 0.04 1.11 5.31 -17.82 -0.09 1.02 16 23 N -0.89 -26.15 13.70 55.43 0.76 -25.39 16 24 Si 1.04 24.08 26.28 -169.99 -4.47 19.61 16 25 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 26 H -0.27 -5.72 5.71 56.52 0.32 -5.40 16 27 H -0.28 -6.28 7.11 56.52 0.40 -5.87 16 28 C -0.14 -2.98 5.27 -26.73 -0.14 -3.13 16 29 C -0.15 -2.72 8.54 37.16 0.32 -2.40 16 30 H 0.07 0.35 8.14 -51.92 -0.42 -0.07 16 31 H 0.08 0.20 8.14 -51.93 -0.42 -0.23 16 32 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 33 H 0.07 0.24 7.65 -51.93 -0.40 -0.16 16 34 H 0.07 0.23 7.65 -51.93 -0.40 -0.17 16 35 H 0.14 0.51 6.27 -52.49 -0.33 0.18 16 36 H 0.14 0.63 8.06 -52.49 -0.42 0.20 16 37 H 0.17 2.30 5.45 -52.48 -0.29 2.02 16 38 H 0.43 5.01 7.73 -40.82 -0.32 4.70 16 39 H 0.41 7.78 8.00 -40.82 -0.33 7.45 16 40 H 0.27 7.87 8.73 -40.82 -0.36 7.52 16 41 H 0.07 1.63 4.81 -51.93 -0.25 1.38 16 42 H 0.05 1.14 8.14 -51.93 -0.42 0.72 16 43 H 0.05 0.84 5.62 -51.93 -0.29 0.55 16 44 H 0.05 1.03 7.91 -51.93 -0.41 0.61 16 45 H 0.03 0.58 8.14 -51.93 -0.42 0.15 16 LS Contribution 379.47 15.07 5.72 5.72 Total: -1.00 -31.03 379.47 -5.86 -36.89 By element: Atomic # 1 Polarization: 15.02 SS G_CDS: -5.51 Total: 9.51 kcal Atomic # 6 Polarization: 3.92 SS G_CDS: -2.76 Total: 1.16 kcal Atomic # 7 Polarization: -53.11 SS G_CDS: 1.20 Total: -51.91 kcal Atomic # 8 Polarization: -20.94 SS G_CDS: -0.03 Total: -20.98 kcal Atomic # 14 Polarization: 24.08 SS G_CDS: -4.47 Total: 19.61 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -31.03 -5.86 -36.89 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000188808667.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.052 kcal (2) G-P(sol) polarization free energy of solvation -31.035 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.087 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.857 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.892 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.944 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds