Wall clock time and date at job start Wed Apr 1 2020 03:42:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42900 * 109.46870 * 2 1 4 4 C 1.35812 * 117.00105 * 180.02562 * 3 2 1 5 5 C 1.38785 * 119.93137 * 0.02562 * 4 3 2 6 6 C 1.37826 * 120.17743 * 179.97438 * 5 4 3 7 7 C 1.39775 * 120.04432 * 359.97438 * 6 5 4 8 8 C 1.43196 * 120.06381 * 180.02562 * 7 6 5 9 9 N 7.45806 * 162.73004 * 359.94705 * 2 1 3 10 10 C 1.39688 * 119.86619 * 359.75056 * 7 6 5 11 11 C 1.38396 * 119.82629 * 0.52029 * 10 7 6 12 12 N 1.39898 * 120.02405 * 179.74815 * 11 10 7 13 13 C 1.34776 * 119.99948 * 20.23563 * 12 11 10 14 14 O 1.21388 * 119.99955 * 5.66316 * 13 12 11 15 15 C 1.49334 * 120.00201 * 185.66675 * 13 12 11 16 16 O 1.21360 * 119.99915 * 359.97438 * 15 13 12 17 17 N 1.34776 * 120.00240 * 179.97438 * 15 13 12 18 18 C 1.46498 * 120.00532 * 179.97438 * 17 15 13 19 19 H 1.09005 * 109.46744 * 35.00460 * 18 17 15 20 20 C 1.50697 * 109.47434 * 155.00084 * 18 17 15 21 21 H 1.08003 * 120.00097 * 5.68467 * 20 18 17 22 22 C 1.37879 * 119.99897 * 185.68746 * 20 18 17 23 23 N 1.31522 * 119.99911 * 196.75541 * 22 20 18 24 24 Si 1.86797 * 120.00229 * 16.75341 * 22 20 18 25 25 H 1.48503 * 109.47179 * 179.97438 * 24 22 20 26 26 H 1.48498 * 109.47200 * 300.00141 * 24 22 20 27 27 H 1.48501 * 109.47164 * 60.00496 * 24 22 20 28 28 C 1.52997 * 109.47651 * 275.00691 * 18 17 15 29 29 C 1.53000 * 109.47312 * 66.10758 * 28 18 17 30 30 H 1.09007 * 109.47444 * 59.99676 * 1 2 3 31 31 H 1.08997 * 109.47240 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47181 * 299.99877 * 1 2 3 33 33 H 1.08994 * 109.47125 * 240.00844 * 2 1 3 34 34 H 1.08990 * 109.47437 * 120.00087 * 2 1 3 35 35 H 1.07993 * 119.91767 * 0.02562 * 5 4 3 36 36 H 1.07997 * 119.97855 * 180.02562 * 6 5 4 37 37 H 1.08006 * 120.08361 * 180.29436 * 10 7 6 38 38 H 0.96998 * 120.00703 * 200.22551 * 12 11 10 39 39 H 0.97005 * 119.99769 * 0.02562 * 17 15 13 40 40 H 0.96996 * 119.99766 * 354.92951 * 23 22 20 41 41 H 1.09002 * 109.47417 * 186.11195 * 28 18 17 42 42 H 1.09003 * 109.46724 * 306.11358 * 28 18 17 43 43 H 1.09002 * 109.47236 * 300.00547 * 29 28 18 44 44 H 1.09003 * 109.47223 * 60.00011 * 29 28 18 45 45 H 1.08999 * 109.47355 * 180.02562 * 29 28 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3527 1.5253 -0.0005 5 6 4.1968 0.4237 -0.0016 6 6 5.5640 0.5985 -0.0027 7 6 6.1047 1.8875 -0.0033 8 6 7.5250 2.0696 -0.0049 9 7 8.6518 2.2141 -0.0020 10 6 5.2567 2.9975 -0.0080 11 6 3.8848 2.8157 -0.0012 12 7 3.0317 3.9245 -0.0006 13 6 3.4870 5.1252 -0.4100 14 8 4.6037 5.2244 -0.8754 15 6 2.6177 6.3336 -0.2909 16 8 1.5011 6.2344 0.1741 17 7 3.0731 7.5344 -0.6998 18 6 2.2202 8.7198 -0.5835 19 1 1.6124 8.6430 0.3181 20 6 3.0823 9.9533 -0.5045 21 1 4.1521 9.8733 -0.6296 22 6 2.5054 11.1839 -0.2724 23 7 3.1797 12.2844 -0.5252 24 14 0.7661 11.2880 0.4009 25 1 0.3817 12.7135 0.5606 26 1 -0.1702 10.6249 -0.5419 27 1 0.7044 10.6085 1.7199 28 6 1.3071 8.8133 -1.8075 29 6 0.3278 7.6378 -1.8043 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.8933 -0.5137 -0.8900 34 1 1.8934 -0.5138 0.8899 35 1 3.7815 -0.5731 -0.0024 36 1 6.2179 -0.2610 -0.0039 37 1 5.6708 3.9950 -0.0133 38 1 2.1126 3.8293 0.2942 39 1 3.9655 7.6136 -1.0718 40 1 4.1070 12.2316 -0.8046 41 1 0.7506 9.7499 -1.7750 42 1 1.9109 8.7806 -2.7145 43 1 0.8843 6.7011 -1.8368 44 1 -0.2759 7.6703 -0.8973 45 1 -0.3224 7.7041 -2.6766 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000188808667.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:42:51 Heat of formation + Delta-G solvation = -69.715197 kcal Electronic energy + Delta-G solvation = -29596.405710 eV Core-core repulsion = 25386.014236 eV Total energy + Delta-G solvation = -4210.391474 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.39485 -41.21175 -39.95011 -38.92655 -37.46693 -37.24799 -36.02309 -34.48434 -33.18519 -32.75713 -31.61734 -30.65873 -29.33456 -26.39832 -25.48465 -24.35819 -24.02710 -23.08120 -21.86309 -21.30447 -20.70075 -19.96696 -19.30196 -18.87481 -18.10620 -17.49222 -17.15261 -17.10558 -16.82667 -16.46304 -15.72006 -15.61235 -15.45006 -15.10260 -15.04672 -14.83554 -14.70934 -14.52306 -14.46308 -14.22832 -14.02003 -13.79013 -13.59936 -13.43208 -13.25967 -13.15500 -12.94817 -12.67654 -12.56674 -12.42309 -12.26774 -12.02505 -11.80615 -11.75903 -11.57768 -11.40523 -11.13123 -10.62315 -10.49122 -10.02531 -9.80125 -8.99481 -8.83067 -6.47948 -0.33487 -0.09946 0.52296 1.19344 1.47505 1.53404 1.58988 1.71985 1.79245 2.04556 2.12628 2.43269 2.58287 2.78069 2.87522 2.99801 3.38662 3.70748 3.83812 4.04641 4.18144 4.18506 4.27236 4.30155 4.38616 4.47769 4.48943 4.52244 4.68625 4.79513 4.90547 5.04204 5.04367 5.09471 5.11741 5.14520 5.21958 5.24448 5.34140 5.40657 5.51206 5.51964 5.61066 5.88280 5.97463 6.24280 6.41672 6.42628 6.48445 6.66963 6.97189 7.29861 8.57014 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.012115 B = 0.002847 C = 0.002378 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2310.557858 B = 9832.720859 C =11771.468133 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.044 3.956 3 O -0.326 6.326 4 C 0.147 3.853 5 C -0.177 4.177 6 C -0.022 4.022 7 C -0.061 4.061 8 C 0.283 3.717 9 N -0.468 5.468 10 C -0.067 4.067 11 C 0.094 3.906 12 N -0.620 5.620 13 C 0.513 3.487 14 O -0.520 6.520 15 C 0.499 3.501 16 O -0.536 6.536 17 N -0.670 5.670 18 C 0.251 3.749 19 H 0.039 0.961 20 C -0.620 4.620 21 H 0.034 0.966 22 C -0.005 4.005 23 N -0.926 5.926 24 Si 1.073 2.927 25 H -0.285 1.285 26 H -0.237 1.237 27 H -0.268 1.268 28 C -0.138 4.138 29 C -0.136 4.136 30 H 0.057 0.943 31 H 0.102 0.898 32 H 0.060 0.940 33 H 0.085 0.915 34 H 0.088 0.912 35 H 0.185 0.815 36 H 0.171 0.829 37 H 0.144 0.856 38 H 0.434 0.566 39 H 0.407 0.593 40 H 0.256 0.744 41 H 0.066 0.934 42 H 0.052 0.948 43 H 0.045 0.955 44 H 0.050 0.950 45 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.544 -31.937 1.045 32.617 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.030 4.030 3 O -0.239 6.239 4 C 0.098 3.902 5 C -0.196 4.196 6 C -0.043 4.043 7 C -0.065 4.065 8 C -0.032 4.032 9 N -0.145 5.145 10 C -0.089 4.089 11 C -0.001 4.001 12 N -0.266 5.266 13 C 0.295 3.705 14 O -0.396 6.396 15 C 0.279 3.721 16 O -0.415 6.415 17 N -0.319 5.319 18 C 0.147 3.853 19 H 0.057 0.943 20 C -0.658 4.658 21 H 0.053 0.947 22 C -0.206 4.206 23 N -0.561 5.561 24 Si 0.894 3.106 25 H -0.210 1.210 26 H -0.161 1.161 27 H -0.194 1.194 28 C -0.177 4.177 29 C -0.194 4.194 30 H 0.076 0.924 31 H 0.120 0.880 32 H 0.079 0.921 33 H 0.103 0.897 34 H 0.107 0.893 35 H 0.202 0.798 36 H 0.189 0.811 37 H 0.161 0.839 38 H 0.274 0.726 39 H 0.243 0.757 40 H 0.066 0.934 41 H 0.084 0.916 42 H 0.071 0.929 43 H 0.064 0.936 44 H 0.070 0.930 45 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -6.209 -30.421 1.449 31.082 hybrid contribution 1.624 -0.305 -0.503 1.727 sum -4.584 -30.726 0.947 31.081 Atomic orbital electron populations 1.21845 0.92271 1.04186 1.02989 1.23255 0.96388 0.79668 1.03692 1.86052 1.17546 1.32834 1.87501 1.18930 0.84037 0.91643 0.95592 1.21360 0.92570 0.98913 1.06745 1.21308 0.95357 0.95016 0.92642 1.15753 0.83332 0.94914 1.12502 1.25799 0.92691 0.92479 0.92196 1.81272 1.13500 1.08502 1.11178 1.21323 0.90813 1.00243 0.96545 1.16985 0.89353 0.84525 1.09224 1.42836 1.16238 1.05721 1.61840 1.20288 0.86966 0.84837 0.78372 1.90686 1.20372 1.85625 1.42938 1.19914 0.87089 0.84707 0.80367 1.90728 1.19801 1.85723 1.45248 1.46044 1.19493 1.06867 1.59491 1.19002 0.89681 0.81550 0.95055 0.94342 1.22262 0.94227 0.93743 1.55558 0.94729 1.26982 1.09223 0.91238 0.93140 1.70986 1.11057 1.30484 1.43559 0.83729 0.72021 0.76717 0.78159 1.21049 1.16069 1.19371 1.22279 0.97560 0.99078 0.98798 1.21803 0.98737 0.97495 1.01317 0.92408 0.87990 0.92122 0.89650 0.89346 0.79798 0.81125 0.83890 0.72609 0.75740 0.93422 0.91585 0.92918 0.93560 0.93039 0.92136 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.87 10.28 71.98 0.74 -0.13 16 2 C 0.04 0.23 5.46 71.98 0.39 0.63 16 3 O -0.33 -4.33 9.48 -91.44 -0.87 -5.20 16 4 C 0.15 2.13 6.71 22.73 0.15 2.28 16 5 C -0.18 -1.42 9.01 22.30 0.20 -1.22 16 6 C -0.02 -0.22 9.74 22.54 0.22 0.00 16 7 C -0.06 -1.10 5.74 -21.31 -0.12 -1.22 16 8 C 0.28 6.54 15.32 88.33 1.35 7.89 16 9 N -0.47 -13.30 18.54 19.00 0.35 -12.94 16 10 C -0.07 -1.52 8.48 22.66 0.19 -1.33 16 11 C 0.09 1.98 6.50 38.22 0.25 2.23 16 12 N -0.62 -15.20 5.30 -304.61 -1.61 -16.82 16 13 C 0.51 15.88 7.72 87.23 0.67 16.55 16 14 O -0.52 -17.70 13.40 -3.36 -0.05 -17.74 16 15 C 0.50 17.97 6.51 87.23 0.57 18.54 16 16 O -0.54 -20.12 13.63 -3.28 -0.04 -20.16 16 17 N -0.67 -27.09 5.02 -447.56 -2.25 -29.34 16 18 C 0.25 11.50 1.81 44.24 0.08 11.58 16 19 H 0.04 1.85 6.24 -2.38 -0.01 1.83 16 20 C -0.62 -33.70 9.01 25.60 0.23 -33.47 16 21 H 0.03 2.04 7.96 -2.91 -0.02 2.01 16 22 C -0.01 -0.29 5.31 84.65 0.45 0.16 16 23 N -0.93 -56.06 13.70 21.45 0.29 -55.77 16 24 Si 1.07 48.29 26.28 68.60 1.80 50.10 16 25 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 26 H -0.24 -9.40 5.71 99.48 0.57 -8.83 16 27 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 28 C -0.14 -5.75 5.27 30.59 0.16 -5.59 16 29 C -0.14 -4.81 8.54 71.98 0.61 -4.19 16 30 H 0.06 0.46 8.14 -2.38 -0.02 0.44 16 31 H 0.10 0.12 8.14 -2.39 -0.02 0.10 16 32 H 0.06 0.45 8.14 -2.39 -0.02 0.43 16 33 H 0.09 0.17 7.65 -2.39 -0.02 0.15 16 34 H 0.09 0.12 7.65 -2.39 -0.02 0.10 16 35 H 0.18 0.02 6.27 -2.91 -0.02 0.01 16 36 H 0.17 0.61 8.06 -2.91 -0.02 0.59 16 37 H 0.14 4.08 5.45 -2.91 -0.02 4.06 16 38 H 0.43 9.70 7.73 -92.71 -0.72 8.98 16 39 H 0.41 16.27 8.00 -92.70 -0.74 15.53 16 40 H 0.26 15.72 8.73 -92.71 -0.81 14.91 16 41 H 0.07 2.83 4.81 -2.39 -0.01 2.82 16 42 H 0.05 2.18 8.14 -2.39 -0.02 2.16 16 43 H 0.05 1.61 5.62 -2.39 -0.01 1.60 16 44 H 0.05 1.84 7.91 -2.39 -0.02 1.82 16 45 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 Total: -1.00 -70.90 379.47 3.23 -67.68 By element: Atomic # 1 Polarization: 28.06 SS G_CDS: -0.56 Total: 27.50 kcal Atomic # 6 Polarization: 6.54 SS G_CDS: 6.16 Total: 12.70 kcal Atomic # 7 Polarization: -111.65 SS G_CDS: -3.22 Total: -114.87 kcal Atomic # 8 Polarization: -42.15 SS G_CDS: -0.96 Total: -43.11 kcal Atomic # 14 Polarization: 48.29 SS G_CDS: 1.80 Total: 50.10 kcal Total: -70.90 3.23 -67.68 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000188808667.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.038 kcal (2) G-P(sol) polarization free energy of solvation -70.903 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.941 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.226 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.677 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.715 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds