Wall clock time and date at job start Wed Apr 1 2020 03:42:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52996 * 109.47152 * 2 1 4 4 H 1.09005 * 109.47127 * 55.00331 * 3 2 1 5 5 C 1.50707 * 109.46765 * 174.99808 * 3 2 1 6 6 H 1.07997 * 119.99841 * 120.00618 * 5 3 2 7 7 C 1.37875 * 119.99786 * 299.99924 * 5 3 2 8 8 N 1.31517 * 119.99457 * 180.02562 * 7 5 3 9 9 Si 1.86789 * 120.00327 * 0.02562 * 7 5 3 10 10 H 1.48497 * 109.47275 * 89.99881 * 9 7 5 11 11 H 1.48504 * 109.47033 * 209.99905 * 9 7 5 12 12 H 1.48501 * 109.47291 * 329.99600 * 9 7 5 13 13 N 1.46495 * 109.47378 * 294.99768 * 3 2 1 14 14 C 1.34783 * 119.99970 * 85.00211 * 13 3 2 15 15 O 1.21363 * 119.99601 * 359.97438 * 14 13 3 16 16 C 1.49327 * 120.00013 * 180.02562 * 14 13 3 17 17 O 1.21392 * 119.99875 * 359.97438 * 16 14 13 18 18 N 1.34769 * 120.00163 * 180.02562 * 16 14 13 19 19 C 1.39823 * 120.00445 * 174.73116 * 18 16 14 20 20 C 1.38969 * 120.17071 * 146.90780 * 19 18 16 21 21 C 1.37832 * 120.29502 * 180.02562 * 20 19 18 22 22 C 1.39410 * 120.23298 * 359.95061 * 21 20 19 23 23 C 1.38945 * 119.07227 * 0.02562 * 22 21 20 24 24 C 1.37591 * 120.87698 * 359.74647 * 23 22 21 25 25 C 1.51150 * 106.35250 * 179.97438 * 23 22 21 26 26 C 1.51383 * 104.08777 * 0.02562 * 25 23 22 27 27 O 1.21289 * 126.43551 * 180.02562 * 26 25 23 28 28 N 1.34363 * 107.13477 * 0.02562 * 26 25 23 29 29 C 1.46503 * 123.88188 * 180.02562 * 28 26 25 30 30 H 1.08995 * 109.46794 * 300.00433 * 1 2 3 31 31 H 1.09007 * 109.46703 * 60.00118 * 1 2 3 32 32 H 1.08995 * 109.47316 * 179.97438 * 1 2 3 33 33 H 1.09004 * 109.46980 * 239.99743 * 2 1 3 34 34 H 1.08994 * 109.46867 * 120.00211 * 2 1 3 35 35 H 0.97001 * 120.00118 * 180.02562 * 8 7 5 36 36 H 0.96998 * 120.00186 * 264.99956 * 13 3 2 37 37 H 0.97008 * 119.99686 * 354.72176 * 18 16 14 38 38 H 1.08001 * 119.85157 * 359.97438 * 20 19 18 39 39 H 1.08001 * 119.88161 * 179.97438 * 21 20 19 40 40 H 1.08001 * 120.07280 * 180.27909 * 24 23 22 41 41 H 1.08998 * 110.50873 * 241.35740 * 25 23 22 42 42 H 1.08995 * 110.50285 * 118.65248 * 25 23 22 43 43 H 1.09003 * 109.46962 * 269.99708 * 29 28 26 44 44 H 1.09001 * 109.46785 * 29.99621 * 29 28 26 45 45 H 1.09003 * 109.47110 * 149.99628 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6055 1.9815 0.8419 5 6 3.5420 1.4442 0.1239 6 1 4.1473 1.8888 -0.6522 7 6 4.1433 0.8782 1.2281 8 7 5.4540 0.8802 1.3363 9 14 3.0963 0.1088 2.5701 10 1 2.8754 -1.3273 2.2634 11 1 3.7936 0.2347 3.8752 12 1 1.7877 0.8073 2.6387 13 7 1.6526 2.0975 -1.2518 14 6 0.4352 2.6645 -1.3669 15 8 -0.3400 2.6319 -0.4338 16 6 0.0401 3.3316 -2.6431 17 8 0.8154 3.3637 -3.5766 18 7 -1.1769 3.8990 -2.7581 19 6 -1.5068 4.6185 -3.9108 20 6 -2.8137 4.6196 -4.3833 21 6 -3.1417 5.3275 -5.5195 22 6 -2.1645 6.0493 -6.2034 23 6 -0.8606 6.0429 -5.7233 24 6 -0.5300 5.3413 -4.5868 25 6 -0.0546 6.9032 -6.6692 26 6 -1.0644 7.3658 -7.6978 27 8 -0.8451 8.0834 -8.6507 28 7 -2.2495 6.8322 -7.3569 29 6 -3.4880 7.0452 -8.1099 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5139 -0.8901 32 1 -0.3634 -1.0276 -0.0005 33 1 1.8934 -0.5139 -0.8900 34 1 1.8933 -0.5138 0.8899 35 1 5.8771 0.4817 2.1130 36 1 2.2721 2.1231 -1.9977 37 1 -1.8242 3.8081 -2.0413 38 1 -3.5756 4.0625 -3.8583 39 1 -4.1593 5.3234 -5.8811 40 1 0.4867 5.3489 -4.2227 41 1 0.7320 6.3161 -7.1432 42 1 0.3702 7.7568 -6.1410 43 1 -4.0022 7.9246 -7.7221 44 1 -3.2514 7.1974 -9.1629 45 1 -4.1319 6.1720 -8.0047 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000193387509.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:42:21 Heat of formation + Delta-G solvation = -51.390458 kcal Electronic energy + Delta-G solvation = -29408.506332 eV Core-core repulsion = 25198.909478 eV Total energy + Delta-G solvation = -4209.596853 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.88842 -40.75978 -39.12308 -38.17397 -36.53585 -35.67803 -34.36248 -33.26955 -32.46767 -31.63201 -30.06545 -28.39708 -27.79237 -26.97207 -24.95859 -23.00224 -22.56127 -21.99541 -20.70549 -20.57811 -19.81306 -18.82533 -17.71760 -17.44324 -16.94340 -16.69614 -16.61209 -15.94723 -15.78021 -15.43897 -14.96607 -14.69218 -14.47625 -14.21718 -14.07690 -13.85931 -13.58684 -13.51397 -13.36667 -13.24920 -13.07921 -12.81356 -12.57813 -12.44188 -12.06789 -11.92310 -11.71603 -11.39302 -11.21743 -11.12102 -10.95488 -10.74120 -10.47398 -10.03606 -9.85498 -9.66104 -9.36666 -9.31409 -9.16046 -8.86227 -8.34052 -7.90016 -6.28110 -4.32337 0.67661 0.96560 1.62120 2.12922 2.34101 2.47614 3.16895 3.29584 3.30559 3.31764 3.54485 3.71073 3.90990 4.07717 4.23491 4.43968 4.57852 4.72639 4.83521 4.87295 4.92009 4.95247 5.04040 5.06981 5.17448 5.29231 5.55968 5.57783 5.62759 5.81966 5.89847 5.94867 6.01342 6.02805 6.23508 6.40544 6.48868 6.55416 6.64923 6.70411 6.76455 6.89595 7.04550 7.12796 7.33526 7.52985 7.64359 7.97070 8.32940 8.45527 8.72312 9.30061 10.83677 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.024577 B = 0.002156 C = 0.002019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1138.996372 B =12986.589373 C =13865.336261 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.141 4.141 3 C 0.241 3.759 4 H 0.055 0.945 5 C -0.540 4.540 6 H 0.083 0.917 7 C 0.080 3.920 8 N -0.887 5.887 9 Si 0.883 3.117 10 H -0.274 1.274 11 H -0.293 1.293 12 H -0.260 1.260 13 N -0.659 5.659 14 C 0.497 3.503 15 O -0.530 6.530 16 C 0.508 3.492 17 O -0.500 6.500 18 N -0.648 5.648 19 C 0.133 3.867 20 C -0.107 4.107 21 C -0.115 4.115 22 C 0.123 3.877 23 C -0.119 4.119 24 C -0.067 4.067 25 C -0.114 4.114 26 C 0.526 3.474 27 O -0.506 6.506 28 N -0.553 5.553 29 C 0.078 3.922 30 H 0.054 0.946 31 H 0.048 0.952 32 H 0.035 0.965 33 H 0.062 0.938 34 H 0.059 0.941 35 H 0.269 0.731 36 H 0.408 0.592 37 H 0.424 0.576 38 H 0.138 0.862 39 H 0.130 0.870 40 H 0.145 0.855 41 H 0.127 0.873 42 H 0.126 0.874 43 H 0.066 0.934 44 H 0.083 0.917 45 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.131 8.797 -13.598 25.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.179 4.179 3 C 0.138 3.862 4 H 0.073 0.927 5 C -0.578 4.578 6 H 0.101 0.899 7 C -0.124 4.124 8 N -0.524 5.524 9 Si 0.712 3.288 10 H -0.201 1.201 11 H -0.220 1.220 12 H -0.184 1.184 13 N -0.308 5.308 14 C 0.275 3.725 15 O -0.409 6.409 16 C 0.291 3.709 17 O -0.373 6.373 18 N -0.296 5.296 19 C 0.038 3.962 20 C -0.128 4.128 21 C -0.136 4.136 22 C 0.027 3.973 23 C -0.123 4.123 24 C -0.088 4.088 25 C -0.153 4.153 26 C 0.316 3.684 27 O -0.381 6.381 28 N -0.276 5.276 29 C -0.063 4.063 30 H 0.074 0.926 31 H 0.067 0.933 32 H 0.054 0.946 33 H 0.081 0.919 34 H 0.077 0.923 35 H 0.079 0.921 36 H 0.244 0.756 37 H 0.262 0.738 38 H 0.155 0.845 39 H 0.148 0.852 40 H 0.163 0.837 41 H 0.145 0.855 42 H 0.143 0.857 43 H 0.085 0.915 44 H 0.101 0.899 45 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -18.816 9.165 -14.065 25.216 hybrid contribution -0.575 -0.624 0.722 1.114 sum -19.391 8.541 -13.342 25.040 Atomic orbital electron populations 1.21892 0.96903 0.99444 1.02028 1.22318 0.94392 0.99575 1.01659 1.19364 0.96241 0.88703 0.81870 0.92737 1.21000 0.88188 1.40396 1.08190 0.89858 1.24824 0.94908 0.95050 0.97613 1.69861 1.08677 1.44015 1.29801 0.86911 0.80904 0.80007 0.80975 1.20118 1.22015 1.18426 1.46110 1.13688 1.52342 1.18695 1.19609 0.84332 0.81322 0.87201 1.90748 1.51266 1.59318 1.39531 1.20857 0.81867 0.78963 0.89256 1.90770 1.50562 1.56496 1.39521 1.43162 1.16473 1.50996 1.18936 1.17504 0.93746 0.95290 0.89654 1.20633 0.95321 1.00604 0.96266 1.20066 0.98272 0.99380 0.95920 1.18163 0.95218 0.95556 0.88368 1.19566 0.93522 1.01790 0.97400 1.20250 1.00583 0.94050 0.93910 1.21075 0.98261 1.00956 0.94976 1.20657 0.83286 0.78959 0.85495 1.90785 1.81515 1.36236 1.29596 1.45731 1.10505 1.46367 1.24966 1.21820 0.84993 1.02406 0.97105 0.92642 0.93285 0.94574 0.91896 0.92307 0.92123 0.75593 0.73752 0.84463 0.85187 0.83749 0.85517 0.85662 0.91538 0.89874 0.90232 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.65 8.51 37.16 0.32 -2.33 16 2 C -0.14 -2.93 5.11 -26.73 -0.14 -3.06 16 3 C 0.24 5.36 1.83 -69.08 -0.13 5.24 16 4 H 0.05 1.31 6.64 -51.93 -0.34 0.97 16 5 C -0.54 -14.03 9.31 -34.44 -0.32 -14.35 16 6 H 0.08 2.31 7.98 -52.49 -0.42 1.89 16 7 C 0.08 2.18 5.45 -17.82 -0.10 2.08 16 8 N -0.89 -25.57 13.96 55.43 0.77 -24.79 16 9 Si 0.88 20.69 24.41 -169.99 -4.15 16.54 16 10 H -0.27 -6.24 6.83 56.52 0.39 -5.85 16 11 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 12 H -0.26 -5.92 6.53 56.52 0.37 -5.56 16 13 N -0.66 -12.53 5.01 -55.40 -0.28 -12.81 16 14 C 0.50 8.50 6.45 -11.64 -0.08 8.42 16 15 O -0.53 -9.73 13.62 5.49 0.07 -9.66 16 16 C 0.51 7.36 7.63 -11.65 -0.09 7.27 16 17 O -0.50 -7.99 14.17 5.46 0.08 -7.92 16 18 N -0.65 -7.29 5.33 -10.24 -0.05 -7.35 16 19 C 0.13 1.38 6.29 -83.64 -0.53 0.86 16 20 C -0.11 -0.85 9.94 -39.46 -0.39 -1.24 16 21 C -0.11 -0.85 9.73 -39.29 -0.38 -1.23 16 22 C 0.12 1.10 6.70 -83.59 -0.56 0.54 16 23 C -0.12 -1.17 6.34 -104.38 -0.66 -1.83 16 24 C -0.07 -0.74 8.65 -39.51 -0.34 -1.08 16 25 C -0.11 -0.98 6.88 -28.48 -0.20 -1.18 16 26 C 0.53 5.57 8.23 -10.84 -0.09 5.48 16 27 O -0.51 -6.87 17.67 5.55 0.10 -6.77 16 28 N -0.55 -4.94 3.14 -120.55 -0.38 -5.32 16 29 C 0.08 0.47 10.77 59.85 0.64 1.12 16 30 H 0.05 1.05 7.85 -51.93 -0.41 0.64 16 31 H 0.05 0.86 5.64 -51.93 -0.29 0.57 16 32 H 0.04 0.58 8.14 -51.93 -0.42 0.15 16 33 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 34 H 0.06 1.29 3.21 -51.93 -0.17 1.12 16 35 H 0.27 7.27 8.31 -40.82 -0.34 6.93 16 36 H 0.41 7.43 8.01 -40.82 -0.33 7.10 16 37 H 0.42 4.03 8.30 -40.82 -0.34 3.70 16 38 H 0.14 0.76 8.06 -52.49 -0.42 0.34 16 39 H 0.13 0.63 7.69 -52.49 -0.40 0.22 16 40 H 0.14 1.75 6.43 -52.49 -0.34 1.42 16 41 H 0.13 0.98 8.14 -51.93 -0.42 0.55 16 42 H 0.13 0.89 8.14 -51.93 -0.42 0.47 16 43 H 0.07 0.34 8.14 -51.93 -0.42 -0.09 16 44 H 0.08 0.52 7.95 -51.93 -0.41 0.11 16 45 H 0.08 0.32 7.60 -51.93 -0.39 -0.08 16 LS Contribution 369.96 15.07 5.58 5.58 Total: -1.00 -32.00 369.96 -6.86 -38.86 By element: Atomic # 1 Polarization: 14.51 SS G_CDS: -5.57 Total: 8.94 kcal Atomic # 6 Polarization: 7.73 SS G_CDS: -3.03 Total: 4.70 kcal Atomic # 7 Polarization: -50.34 SS G_CDS: 0.06 Total: -50.27 kcal Atomic # 8 Polarization: -24.60 SS G_CDS: 0.25 Total: -24.35 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -4.15 Total: 16.54 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -32.00 -6.86 -38.86 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000193387509.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.527 kcal (2) G-P(sol) polarization free energy of solvation -32.004 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.532 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.859 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.863 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.390 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds