Wall clock time and date at job start Wed Apr 1 2020 03:42:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52996 * 109.47152 * 2 1 4 4 H 1.09005 * 109.47127 * 55.00331 * 3 2 1 5 5 C 1.50707 * 109.46765 * 174.99808 * 3 2 1 6 6 H 1.07997 * 119.99841 * 120.00618 * 5 3 2 7 7 C 1.37875 * 119.99786 * 299.99924 * 5 3 2 8 8 N 1.31517 * 119.99457 * 180.02562 * 7 5 3 9 9 Si 1.86789 * 120.00327 * 0.02562 * 7 5 3 10 10 H 1.48497 * 109.47275 * 89.99881 * 9 7 5 11 11 H 1.48504 * 109.47033 * 209.99905 * 9 7 5 12 12 H 1.48501 * 109.47291 * 329.99600 * 9 7 5 13 13 N 1.46495 * 109.47378 * 294.99768 * 3 2 1 14 14 C 1.34783 * 119.99970 * 85.00211 * 13 3 2 15 15 O 1.21363 * 119.99601 * 359.97438 * 14 13 3 16 16 C 1.49327 * 120.00013 * 180.02562 * 14 13 3 17 17 O 1.21392 * 119.99875 * 359.97438 * 16 14 13 18 18 N 1.34769 * 120.00163 * 180.02562 * 16 14 13 19 19 C 1.39823 * 120.00445 * 174.73116 * 18 16 14 20 20 C 1.38969 * 120.17071 * 146.90780 * 19 18 16 21 21 C 1.37832 * 120.29502 * 180.02562 * 20 19 18 22 22 C 1.39410 * 120.23298 * 359.95061 * 21 20 19 23 23 C 1.38945 * 119.07227 * 0.02562 * 22 21 20 24 24 C 1.37591 * 120.87698 * 359.74647 * 23 22 21 25 25 C 1.51150 * 106.35250 * 179.97438 * 23 22 21 26 26 C 1.51383 * 104.08777 * 0.02562 * 25 23 22 27 27 O 1.21289 * 126.43551 * 180.02562 * 26 25 23 28 28 N 1.34363 * 107.13477 * 0.02562 * 26 25 23 29 29 C 1.46503 * 123.88188 * 180.02562 * 28 26 25 30 30 H 1.08995 * 109.46794 * 300.00433 * 1 2 3 31 31 H 1.09007 * 109.46703 * 60.00118 * 1 2 3 32 32 H 1.08995 * 109.47316 * 179.97438 * 1 2 3 33 33 H 1.09004 * 109.46980 * 239.99743 * 2 1 3 34 34 H 1.08994 * 109.46867 * 120.00211 * 2 1 3 35 35 H 0.97001 * 120.00118 * 180.02562 * 8 7 5 36 36 H 0.96998 * 120.00186 * 264.99956 * 13 3 2 37 37 H 0.97008 * 119.99686 * 354.72176 * 18 16 14 38 38 H 1.08001 * 119.85157 * 359.97438 * 20 19 18 39 39 H 1.08001 * 119.88161 * 179.97438 * 21 20 19 40 40 H 1.08001 * 120.07280 * 180.27909 * 24 23 22 41 41 H 1.08998 * 110.50873 * 241.35740 * 25 23 22 42 42 H 1.08995 * 110.50285 * 118.65248 * 25 23 22 43 43 H 1.09003 * 109.46962 * 269.99708 * 29 28 26 44 44 H 1.09001 * 109.46785 * 29.99621 * 29 28 26 45 45 H 1.09003 * 109.47110 * 149.99628 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6055 1.9815 0.8419 5 6 3.5420 1.4442 0.1239 6 1 4.1473 1.8888 -0.6522 7 6 4.1433 0.8782 1.2281 8 7 5.4540 0.8802 1.3363 9 14 3.0963 0.1088 2.5701 10 1 2.8754 -1.3273 2.2634 11 1 3.7936 0.2347 3.8752 12 1 1.7877 0.8073 2.6387 13 7 1.6526 2.0975 -1.2518 14 6 0.4352 2.6645 -1.3669 15 8 -0.3400 2.6319 -0.4338 16 6 0.0401 3.3316 -2.6431 17 8 0.8154 3.3637 -3.5766 18 7 -1.1769 3.8990 -2.7581 19 6 -1.5068 4.6185 -3.9108 20 6 -2.8137 4.6196 -4.3833 21 6 -3.1417 5.3275 -5.5195 22 6 -2.1645 6.0493 -6.2034 23 6 -0.8606 6.0429 -5.7233 24 6 -0.5300 5.3413 -4.5868 25 6 -0.0546 6.9032 -6.6692 26 6 -1.0644 7.3658 -7.6978 27 8 -0.8451 8.0834 -8.6507 28 7 -2.2495 6.8322 -7.3569 29 6 -3.4880 7.0452 -8.1099 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5139 -0.8901 32 1 -0.3634 -1.0276 -0.0005 33 1 1.8934 -0.5139 -0.8900 34 1 1.8933 -0.5138 0.8899 35 1 5.8771 0.4817 2.1130 36 1 2.2721 2.1231 -1.9977 37 1 -1.8242 3.8081 -2.0413 38 1 -3.5756 4.0625 -3.8583 39 1 -4.1593 5.3234 -5.8811 40 1 0.4867 5.3489 -4.2227 41 1 0.7320 6.3161 -7.1432 42 1 0.3702 7.7568 -6.1410 43 1 -4.0022 7.9246 -7.7221 44 1 -3.2514 7.1974 -9.1629 45 1 -4.1319 6.1720 -8.0047 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000193387509.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:42:20 Heat of formation + Delta-G solvation = -74.477317 kcal Electronic energy + Delta-G solvation = -29409.507453 eV Core-core repulsion = 25198.909478 eV Total energy + Delta-G solvation = -4210.597975 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.64939 -41.90898 -40.30169 -39.19794 -37.50723 -37.20363 -35.28666 -34.39742 -33.93942 -33.22058 -30.80144 -29.62160 -29.10588 -27.59446 -26.20340 -24.53656 -23.59704 -22.86350 -22.00427 -21.36312 -21.25682 -20.11445 -18.70836 -18.49978 -18.12532 -17.74770 -17.42361 -17.40840 -17.06527 -16.90470 -16.06227 -15.78165 -15.63976 -15.19712 -15.04776 -14.89502 -14.76318 -14.62328 -14.27294 -14.15895 -14.06663 -13.88642 -13.75396 -13.65287 -13.30679 -13.24740 -12.97581 -12.87867 -12.66335 -12.37908 -12.25887 -11.87203 -11.83529 -11.35894 -11.29394 -11.27310 -10.87433 -10.71856 -10.56774 -9.95936 -9.90662 -8.66905 -8.37121 -6.44980 -0.17041 0.28146 0.49128 1.25912 1.30975 1.37118 1.38882 1.47754 1.70258 2.14606 2.27382 2.65434 2.71699 2.98125 3.08700 3.30854 3.50142 3.77515 4.01087 4.14128 4.23213 4.30027 4.32414 4.33124 4.39690 4.43421 4.48565 4.56730 4.74900 4.78749 4.84166 4.90096 4.95374 5.02041 5.10429 5.18227 5.22585 5.26298 5.30833 5.48709 5.51924 5.53317 5.63554 5.89613 6.00720 6.13678 6.52639 6.59365 6.76092 6.77574 7.00440 7.23067 8.78128 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.024577 B = 0.002156 C = 0.002019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1138.996372 B =12986.589373 C =13865.336261 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.141 4.141 3 C 0.249 3.751 4 H 0.040 0.960 5 C -0.540 4.540 6 H 0.052 0.948 7 C 0.028 3.972 8 N -0.934 5.934 9 Si 0.940 3.060 10 H -0.259 1.259 11 H -0.295 1.295 12 H -0.249 1.249 13 N -0.668 5.668 14 C 0.501 3.499 15 O -0.539 6.539 16 C 0.515 3.485 17 O -0.520 6.520 18 N -0.629 5.629 19 C 0.112 3.888 20 C -0.093 4.093 21 C -0.103 4.103 22 C 0.118 3.882 23 C -0.130 4.130 24 C -0.083 4.083 25 C -0.113 4.113 26 C 0.521 3.479 27 O -0.544 6.544 28 N -0.550 5.550 29 C 0.070 3.930 30 H 0.047 0.953 31 H 0.053 0.947 32 H 0.061 0.939 33 H 0.066 0.934 34 H 0.050 0.950 35 H 0.271 0.729 36 H 0.411 0.589 37 H 0.434 0.566 38 H 0.169 0.831 39 H 0.166 0.834 40 H 0.125 0.875 41 H 0.133 0.867 42 H 0.138 0.862 43 H 0.078 0.922 44 H 0.076 0.924 45 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.030 8.208 -13.777 28.063 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.179 4.179 3 C 0.145 3.855 4 H 0.057 0.943 5 C -0.578 4.578 6 H 0.070 0.930 7 C -0.172 4.172 8 N -0.573 5.573 9 Si 0.767 3.233 10 H -0.185 1.185 11 H -0.222 1.222 12 H -0.173 1.173 13 N -0.318 5.318 14 C 0.281 3.719 15 O -0.418 6.418 16 C 0.297 3.703 17 O -0.395 6.395 18 N -0.276 5.276 19 C 0.017 3.983 20 C -0.114 4.114 21 C -0.124 4.124 22 C 0.022 3.978 23 C -0.133 4.133 24 C -0.103 4.103 25 C -0.152 4.152 26 C 0.311 3.689 27 O -0.423 6.423 28 N -0.272 5.272 29 C -0.070 4.070 30 H 0.067 0.933 31 H 0.072 0.928 32 H 0.080 0.920 33 H 0.085 0.915 34 H 0.068 0.932 35 H 0.080 0.920 36 H 0.246 0.754 37 H 0.274 0.726 38 H 0.187 0.813 39 H 0.183 0.817 40 H 0.143 0.857 41 H 0.151 0.849 42 H 0.155 0.845 43 H 0.097 0.903 44 H 0.095 0.905 45 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -22.794 8.585 -14.252 28.221 hybrid contribution 0.583 -0.333 0.678 0.954 sum -22.212 8.253 -13.574 27.308 Atomic orbital electron populations 1.21799 0.94573 1.01137 1.01872 1.22241 0.96432 0.97866 1.01379 1.19020 0.93530 0.90093 0.82871 0.94259 1.21250 0.90300 1.39145 1.07130 0.93027 1.25623 0.95861 0.95743 1.00006 1.69992 1.10547 1.45829 1.30885 0.85977 0.79546 0.79985 0.77841 1.18468 1.22248 1.17309 1.45938 1.14832 1.53253 1.17764 1.19960 0.83338 0.80507 0.88124 1.90734 1.51347 1.59412 1.40272 1.20216 0.82920 0.79342 0.87808 1.90779 1.51443 1.57577 1.39680 1.42962 1.15200 1.49821 1.19638 1.17701 0.94901 0.95984 0.89674 1.20955 0.94552 0.99823 0.96023 1.20455 0.99421 0.97558 0.94942 1.18388 0.95324 0.95690 0.88356 1.19591 0.94444 1.01986 0.97273 1.20158 1.00091 0.95331 0.94768 1.21109 0.98107 1.01393 0.94603 1.20874 0.84227 0.78554 0.85197 1.90759 1.82239 1.38087 1.31176 1.45831 1.10953 1.45530 1.24912 1.22079 0.84173 1.04273 0.96481 0.93341 0.92845 0.91971 0.91517 0.93237 0.92015 0.75361 0.72591 0.81346 0.81653 0.85711 0.84940 0.84485 0.90346 0.90527 0.87516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.61 8.51 71.98 0.61 -4.00 16 2 C -0.14 -5.64 5.11 30.59 0.16 -5.48 16 3 C 0.25 11.06 1.83 44.25 0.08 11.14 16 4 H 0.04 1.88 6.64 -2.38 -0.02 1.86 16 5 C -0.54 -28.82 9.31 25.60 0.24 -28.58 16 6 H 0.05 3.00 7.98 -2.91 -0.02 2.98 16 7 C 0.03 1.52 5.45 84.65 0.46 1.98 16 8 N -0.93 -55.38 13.96 21.45 0.30 -55.08 16 9 Si 0.94 42.57 24.41 68.60 1.67 44.24 16 10 H -0.26 -11.02 6.83 99.48 0.68 -10.34 16 11 H -0.29 -13.36 7.11 99.48 0.71 -12.65 16 12 H -0.25 -10.76 6.53 99.48 0.65 -10.11 16 13 N -0.67 -25.49 5.01 -447.55 -2.24 -27.73 16 14 C 0.50 16.73 6.45 87.23 0.56 17.29 16 15 O -0.54 -18.97 13.62 -3.29 -0.04 -19.02 16 16 C 0.52 14.48 7.63 87.23 0.67 15.15 16 17 O -0.52 -16.59 14.17 -3.38 -0.05 -16.63 16 18 N -0.63 -12.93 5.33 -304.65 -1.62 -14.55 16 19 C 0.11 2.08 6.29 38.24 0.24 2.32 16 20 C -0.09 -1.10 9.94 22.35 0.22 -0.87 16 21 C -0.10 -1.08 9.73 22.46 0.22 -0.87 16 22 C 0.12 1.83 6.70 38.35 0.26 2.09 16 23 C -0.13 -2.40 6.34 -19.70 -0.12 -2.53 16 24 C -0.08 -1.77 8.65 22.31 0.19 -1.57 16 25 C -0.11 -1.94 6.88 29.46 0.20 -1.73 16 26 C 0.52 10.79 8.23 87.94 0.72 11.52 16 27 O -0.54 -14.94 17.67 -3.06 -0.05 -15.00 16 28 N -0.55 -8.81 3.14 -653.93 -2.05 -10.87 16 29 C 0.07 0.67 10.77 127.77 1.38 2.05 16 30 H 0.05 1.70 7.85 -2.39 -0.02 1.68 16 31 H 0.05 1.74 5.64 -2.38 -0.01 1.72 16 32 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 33 H 0.07 2.59 8.14 -2.39 -0.02 2.57 16 34 H 0.05 2.07 3.21 -2.39 -0.01 2.07 16 35 H 0.27 15.03 8.31 -92.71 -0.77 14.26 16 36 H 0.41 15.31 8.01 -92.71 -0.74 14.57 16 37 H 0.43 7.11 8.30 -92.70 -0.77 6.34 16 38 H 0.17 0.95 8.06 -2.91 -0.02 0.93 16 39 H 0.17 0.61 7.69 -2.91 -0.02 0.59 16 40 H 0.12 3.12 6.43 -2.91 -0.02 3.10 16 41 H 0.13 2.07 8.14 -2.39 -0.02 2.05 16 42 H 0.14 1.95 8.14 -2.39 -0.02 1.93 16 43 H 0.08 0.58 8.14 -2.39 -0.02 0.56 16 44 H 0.08 0.86 7.95 -2.39 -0.02 0.84 16 45 H 0.11 0.42 7.60 -2.39 -0.02 0.40 16 Total: -1.00 -71.08 369.96 1.47 -69.61 By element: Atomic # 1 Polarization: 27.65 SS G_CDS: -0.52 Total: 27.13 kcal Atomic # 6 Polarization: 11.80 SS G_CDS: 6.09 Total: 17.89 kcal Atomic # 7 Polarization: -102.61 SS G_CDS: -5.62 Total: -108.23 kcal Atomic # 8 Polarization: -50.50 SS G_CDS: -0.15 Total: -50.65 kcal Atomic # 14 Polarization: 42.57 SS G_CDS: 1.67 Total: 44.24 kcal Total: -71.08 1.47 -69.61 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000193387509.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.863 kcal (2) G-P(sol) polarization free energy of solvation -71.084 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.947 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.614 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.477 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds