Wall clock time and date at job start Wed Apr 1 2020 03:42:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53008 * 109.47132 * 2 1 4 4 H 1.09000 * 109.46955 * 305.00171 * 3 2 1 5 5 C 1.50692 * 109.47416 * 184.99774 * 3 2 1 6 6 H 1.07992 * 120.00559 * 240.00166 * 5 3 2 7 7 C 1.37882 * 119.99530 * 60.00216 * 5 3 2 8 8 N 1.31513 * 120.00420 * 0.02562 * 7 5 3 9 9 Si 1.86804 * 119.99618 * 179.97438 * 7 5 3 10 10 H 1.48493 * 109.47320 * 0.02562 * 9 7 5 11 11 H 1.48500 * 109.46849 * 120.00106 * 9 7 5 12 12 H 1.48499 * 109.47175 * 239.99610 * 9 7 5 13 13 N 1.46497 * 109.46636 * 64.99724 * 3 2 1 14 14 C 1.34776 * 120.00330 * 275.00146 * 13 3 2 15 15 O 1.21361 * 119.99991 * 0.02562 * 14 13 3 16 16 C 1.49338 * 119.99886 * 180.02562 * 14 13 3 17 17 O 1.21381 * 120.00134 * 359.97438 * 16 14 13 18 18 N 1.34781 * 119.99515 * 180.02562 * 16 14 13 19 19 C 1.39835 * 119.99615 * 184.62825 * 18 16 14 20 20 C 1.38967 * 120.16086 * 144.92921 * 19 18 16 21 21 C 1.37824 * 120.28944 * 180.02562 * 20 19 18 22 22 C 1.39418 * 120.23526 * 0.25939 * 21 20 19 23 23 C 1.38939 * 119.06987 * 359.49478 * 22 21 20 24 24 C 1.37593 * 120.87588 * 0.50539 * 23 22 21 25 25 C 1.51145 * 106.34747 * 180.32861 * 23 22 21 26 26 C 1.51375 * 104.09354 * 0.23009 * 25 23 22 27 27 O 1.21293 * 126.43646 * 179.97438 * 26 25 23 28 28 N 1.34363 * 107.13549 * 0.02562 * 26 25 23 29 29 C 1.46497 * 123.88502 * 180.02562 * 28 26 25 30 30 H 1.09003 * 109.46755 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47182 * 299.99585 * 1 2 3 32 32 H 1.08996 * 109.47202 * 60.00335 * 1 2 3 33 33 H 1.08998 * 109.47182 * 240.00415 * 2 1 3 34 34 H 1.08996 * 109.47202 * 119.99665 * 2 1 3 35 35 H 0.96998 * 119.99956 * 180.02562 * 8 7 5 36 36 H 0.97009 * 119.99820 * 95.00985 * 13 3 2 37 37 H 0.96998 * 120.00285 * 4.63605 * 18 16 14 38 38 H 1.07993 * 119.85652 * 0.02562 * 20 19 18 39 39 H 1.08000 * 119.88378 * 179.97438 * 21 20 19 40 40 H 1.08008 * 120.06957 * 179.76090 * 24 23 22 41 41 H 1.09002 * 110.50383 * 118.88388 * 25 23 22 42 42 H 1.09001 * 110.50499 * 241.57449 * 25 23 22 43 43 H 1.09000 * 109.47296 * 0.02562 * 29 28 26 44 44 H 1.08991 * 109.47507 * 120.02488 * 29 28 26 45 45 H 1.09006 * 109.46826 * 240.01944 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9816 -0.8418 5 6 3.5419 1.4444 -0.1238 6 1 4.1471 1.8890 0.6523 7 6 4.1432 0.8785 -1.2280 8 7 3.4062 0.3376 -2.1734 9 14 6.0049 0.8815 -1.3818 10 1 6.5987 1.5464 -0.1942 11 1 6.4970 -0.5172 -1.4630 12 1 6.3990 1.6169 -2.6102 13 7 1.6524 2.0975 1.2518 14 6 0.4350 2.6643 1.3670 15 8 -0.3402 2.6318 0.4338 16 6 0.0402 3.3324 2.6429 17 8 0.8154 3.3644 3.5764 18 7 -1.1774 3.8988 2.7581 19 6 -1.5118 4.6078 3.9161 20 6 -2.3260 5.7311 3.8363 21 6 -2.6568 6.4322 4.9758 22 6 -2.1726 6.0228 6.2174 23 6 -1.3635 4.8954 6.2882 24 6 -1.0309 4.1927 5.1530 25 6 -1.0157 4.7123 7.7476 26 6 -1.7275 5.8535 8.4422 27 8 -1.7199 6.0898 9.6319 28 7 -2.3703 6.5551 7.4935 29 6 -3.1797 7.7455 7.7655 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 3.8293 -0.0608 -2.9500 36 1 2.2719 2.1232 1.9978 37 1 -1.8217 3.8145 2.0380 38 1 -2.7011 6.0562 2.8772 39 1 -3.2897 7.3046 4.9062 40 1 -0.3979 3.3203 5.2225 41 1 -1.3860 3.7537 8.1110 42 1 0.0616 4.7875 7.8957 43 1 -3.1691 7.9555 8.8350 44 1 -2.7673 8.5967 7.2241 45 1 -4.2050 7.5699 7.4397 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000193387524.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:42:25 Heat of formation + Delta-G solvation = -60.015241 kcal Electronic energy + Delta-G solvation = -29324.723671 eV Core-core repulsion = 25114.752819 eV Total energy + Delta-G solvation = -4209.970852 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.85774 -40.65506 -38.99089 -38.06784 -36.48294 -35.41460 -34.29300 -33.22616 -32.44805 -31.04944 -30.02788 -28.33000 -27.33872 -26.90426 -24.81121 -23.18991 -22.55249 -21.85825 -20.62767 -20.33733 -19.54217 -18.69361 -17.71825 -17.34766 -16.83753 -16.66678 -16.37742 -15.76077 -15.69646 -15.18451 -14.92088 -14.45329 -14.38076 -14.21432 -14.08575 -13.83937 -13.48447 -13.42012 -13.34762 -13.15014 -12.79241 -12.75672 -12.52886 -12.15261 -11.68831 -11.62189 -11.37592 -11.27586 -11.05523 -10.95674 -10.89212 -10.47698 -10.39100 -10.30839 -9.79467 -9.74650 -9.24438 -9.17477 -9.07627 -8.61111 -8.09711 -7.87628 -6.21450 -4.31117 0.72546 1.01164 1.72306 2.14706 2.36869 2.58921 3.20193 3.28743 3.32139 3.38233 3.64543 3.77975 3.96951 4.13683 4.30584 4.48750 4.63371 4.74970 4.89286 4.95609 5.00560 5.03452 5.07703 5.11143 5.19708 5.32342 5.61554 5.62289 5.66924 6.01050 6.08013 6.26771 6.26884 6.31441 6.45327 6.50405 6.74639 6.89406 6.94516 7.07640 7.11881 7.22348 7.44157 7.54241 7.59248 7.72824 7.83477 8.03816 8.38125 8.56802 8.81157 9.35956 10.83939 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.020873 B = 0.002095 C = 0.002005 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1341.100796 B =13359.714438 C =13959.806373 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.129 4.129 3 C 0.268 3.732 4 H 0.055 0.945 5 C -0.537 4.537 6 H 0.065 0.935 7 C 0.068 3.932 8 N -0.881 5.881 9 Si 0.903 3.097 10 H -0.272 1.272 11 H -0.282 1.282 12 H -0.282 1.282 13 N -0.666 5.666 14 C 0.494 3.506 15 O -0.529 6.529 16 C 0.507 3.493 17 O -0.506 6.506 18 N -0.649 5.649 19 C 0.131 3.869 20 C -0.106 4.106 21 C -0.115 4.115 22 C 0.122 3.878 23 C -0.122 4.122 24 C -0.068 4.068 25 C -0.113 4.113 26 C 0.527 3.473 27 O -0.508 6.508 28 N -0.552 5.552 29 C 0.076 3.924 30 H 0.026 0.974 31 H 0.035 0.965 32 H 0.052 0.948 33 H 0.104 0.896 34 H 0.035 0.965 35 H 0.265 0.735 36 H 0.402 0.598 37 H 0.424 0.576 38 H 0.138 0.862 39 H 0.130 0.870 40 H 0.149 0.851 41 H 0.125 0.875 42 H 0.126 0.874 43 H 0.089 0.911 44 H 0.070 0.930 45 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.716 10.590 14.300 22.467 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.168 4.168 3 C 0.167 3.833 4 H 0.073 0.927 5 C -0.575 4.575 6 H 0.083 0.917 7 C -0.136 4.136 8 N -0.519 5.519 9 Si 0.731 3.269 10 H -0.196 1.196 11 H -0.208 1.208 12 H -0.208 1.208 13 N -0.315 5.315 14 C 0.273 3.727 15 O -0.408 6.408 16 C 0.291 3.709 17 O -0.379 6.379 18 N -0.296 5.296 19 C 0.036 3.964 20 C -0.127 4.127 21 C -0.136 4.136 22 C 0.026 3.974 23 C -0.125 4.125 24 C -0.088 4.088 25 C -0.152 4.152 26 C 0.316 3.684 27 O -0.384 6.384 28 N -0.275 5.275 29 C -0.066 4.066 30 H 0.045 0.955 31 H 0.054 0.946 32 H 0.071 0.929 33 H 0.122 0.878 34 H 0.054 0.946 35 H 0.075 0.925 36 H 0.236 0.764 37 H 0.263 0.737 38 H 0.156 0.844 39 H 0.148 0.852 40 H 0.166 0.834 41 H 0.143 0.857 42 H 0.144 0.856 43 H 0.108 0.892 44 H 0.089 0.911 45 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -13.664 10.669 14.796 22.791 hybrid contribution 0.852 0.110 -0.229 0.889 sum -12.812 10.779 14.567 22.193 Atomic orbital electron populations 1.21856 0.98290 0.98454 1.01009 1.21969 0.92659 0.99368 1.02819 1.19032 0.94835 0.89400 0.80064 0.92715 1.21237 0.90292 1.39391 1.06577 0.91700 1.24875 0.98850 0.94593 0.95243 1.69887 1.35200 1.37446 1.09334 0.86357 0.84511 0.77859 0.78212 1.19619 1.20796 1.20825 1.46476 1.13399 1.52378 1.19261 1.19556 0.84593 0.81531 0.87029 1.90750 1.51175 1.59419 1.39411 1.21047 0.81391 0.78891 0.89619 1.90722 1.51038 1.56230 1.39956 1.43169 1.15922 1.51914 1.18608 1.17547 0.99614 0.93247 0.85988 1.20677 1.00026 0.93291 0.98734 1.20070 1.02978 1.01619 0.88963 1.18165 0.98802 0.94920 0.85473 1.19593 1.01252 0.96910 0.94776 1.20388 0.99509 1.00291 0.88638 1.21062 1.03479 0.99415 0.91250 1.20664 0.78447 0.83651 0.85607 1.90782 1.62280 1.71807 1.13485 1.45711 1.47762 1.28077 1.05975 1.21834 0.94990 0.86093 1.03670 0.95452 0.94633 0.92924 0.87823 0.94629 0.92471 0.76359 0.73728 0.84419 0.85208 0.83353 0.85727 0.85592 0.89219 0.91099 0.91095 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.84 8.51 37.16 0.32 -2.52 16 2 C -0.13 -2.96 5.45 -26.73 -0.15 -3.10 16 3 C 0.27 6.35 2.24 -69.08 -0.15 6.19 16 4 H 0.06 1.48 7.58 -51.93 -0.39 1.08 16 5 C -0.54 -13.63 8.73 -34.44 -0.30 -13.93 16 6 H 0.06 1.61 7.74 -52.49 -0.41 1.20 16 7 C 0.07 1.75 5.29 -17.82 -0.09 1.66 16 8 N -0.88 -23.61 11.30 55.43 0.63 -22.98 16 9 Si 0.90 20.06 29.54 -169.99 -5.02 15.04 16 10 H -0.27 -5.97 7.11 56.52 0.40 -5.56 16 11 H -0.28 -6.24 7.11 56.52 0.40 -5.83 16 12 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 13 N -0.67 -13.34 5.01 -55.40 -0.28 -13.62 16 14 C 0.49 9.05 6.45 -11.64 -0.08 8.98 16 15 O -0.53 -10.52 13.62 5.49 0.07 -10.45 16 16 C 0.51 7.78 7.73 -11.64 -0.09 7.69 16 17 O -0.51 -8.35 13.92 5.47 0.08 -8.27 16 18 N -0.65 -7.81 5.33 -10.23 -0.05 -7.86 16 19 C 0.13 1.44 6.31 -83.64 -0.53 0.91 16 20 C -0.11 -0.91 9.94 -39.46 -0.39 -1.30 16 21 C -0.11 -0.91 9.83 -39.29 -0.39 -1.29 16 22 C 0.12 1.14 6.70 -83.59 -0.56 0.58 16 23 C -0.12 -1.23 6.34 -104.38 -0.66 -1.89 16 24 C -0.07 -0.77 8.69 -39.52 -0.34 -1.11 16 25 C -0.11 -0.99 6.87 -28.49 -0.20 -1.19 16 26 C 0.53 5.64 8.24 -10.84 -0.09 5.55 16 27 O -0.51 -6.92 17.43 5.55 0.10 -6.82 16 28 N -0.55 -5.07 3.14 -120.56 -0.38 -5.45 16 29 C 0.08 0.47 10.86 59.85 0.65 1.12 16 30 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.03 0.69 5.64 -51.93 -0.29 0.40 16 32 H 0.05 1.13 7.85 -51.93 -0.41 0.72 16 33 H 0.10 2.63 5.95 -51.93 -0.31 2.32 16 34 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.27 6.75 8.31 -40.82 -0.34 6.41 16 36 H 0.40 7.55 8.01 -40.82 -0.33 7.23 16 37 H 0.42 4.43 8.30 -40.82 -0.34 4.10 16 38 H 0.14 0.88 8.06 -52.49 -0.42 0.45 16 39 H 0.13 0.70 8.06 -52.49 -0.42 0.28 16 40 H 0.15 1.84 6.24 -52.48 -0.33 1.51 16 41 H 0.12 0.89 8.14 -51.93 -0.42 0.46 16 42 H 0.13 0.98 8.14 -51.93 -0.42 0.56 16 43 H 0.09 0.60 7.57 -51.93 -0.39 0.20 16 44 H 0.07 0.35 8.14 -51.93 -0.42 -0.08 16 45 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 LS Contribution 376.92 15.07 5.68 5.68 Total: -1.00 -30.53 376.92 -7.94 -38.47 By element: Atomic # 1 Polarization: 15.62 SS G_CDS: -5.71 Total: 9.91 kcal Atomic # 6 Polarization: 9.40 SS G_CDS: -3.05 Total: 6.35 kcal Atomic # 7 Polarization: -49.83 SS G_CDS: -0.08 Total: -49.91 kcal Atomic # 8 Polarization: -25.79 SS G_CDS: 0.25 Total: -25.54 kcal Atomic # 14 Polarization: 20.06 SS G_CDS: -5.02 Total: 15.04 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -30.53 -7.94 -38.47 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000193387524.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.544 kcal (2) G-P(sol) polarization free energy of solvation -30.531 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.075 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.941 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.471 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.015 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds