Wall clock time and date at job start Wed Apr 1 2020 03:42:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53008 * 109.47132 * 2 1 4 4 H 1.09000 * 109.46955 * 305.00171 * 3 2 1 5 5 C 1.50692 * 109.47416 * 184.99774 * 3 2 1 6 6 H 1.07992 * 120.00559 * 240.00166 * 5 3 2 7 7 C 1.37882 * 119.99530 * 60.00216 * 5 3 2 8 8 N 1.31513 * 120.00420 * 0.02562 * 7 5 3 9 9 Si 1.86804 * 119.99618 * 179.97438 * 7 5 3 10 10 H 1.48493 * 109.47320 * 0.02562 * 9 7 5 11 11 H 1.48500 * 109.46849 * 120.00106 * 9 7 5 12 12 H 1.48499 * 109.47175 * 239.99610 * 9 7 5 13 13 N 1.46497 * 109.46636 * 64.99724 * 3 2 1 14 14 C 1.34776 * 120.00330 * 275.00146 * 13 3 2 15 15 O 1.21361 * 119.99991 * 0.02562 * 14 13 3 16 16 C 1.49338 * 119.99886 * 180.02562 * 14 13 3 17 17 O 1.21381 * 120.00134 * 359.97438 * 16 14 13 18 18 N 1.34781 * 119.99515 * 180.02562 * 16 14 13 19 19 C 1.39835 * 119.99615 * 184.62825 * 18 16 14 20 20 C 1.38967 * 120.16086 * 144.92921 * 19 18 16 21 21 C 1.37824 * 120.28944 * 180.02562 * 20 19 18 22 22 C 1.39418 * 120.23526 * 0.25939 * 21 20 19 23 23 C 1.38939 * 119.06987 * 359.49478 * 22 21 20 24 24 C 1.37593 * 120.87588 * 0.50539 * 23 22 21 25 25 C 1.51145 * 106.34747 * 180.32861 * 23 22 21 26 26 C 1.51375 * 104.09354 * 0.23009 * 25 23 22 27 27 O 1.21293 * 126.43646 * 179.97438 * 26 25 23 28 28 N 1.34363 * 107.13549 * 0.02562 * 26 25 23 29 29 C 1.46497 * 123.88502 * 180.02562 * 28 26 25 30 30 H 1.09003 * 109.46755 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47182 * 299.99585 * 1 2 3 32 32 H 1.08996 * 109.47202 * 60.00335 * 1 2 3 33 33 H 1.08998 * 109.47182 * 240.00415 * 2 1 3 34 34 H 1.08996 * 109.47202 * 119.99665 * 2 1 3 35 35 H 0.96998 * 119.99956 * 180.02562 * 8 7 5 36 36 H 0.97009 * 119.99820 * 95.00985 * 13 3 2 37 37 H 0.96998 * 120.00285 * 4.63605 * 18 16 14 38 38 H 1.07993 * 119.85652 * 0.02562 * 20 19 18 39 39 H 1.08000 * 119.88378 * 179.97438 * 21 20 19 40 40 H 1.08008 * 120.06957 * 179.76090 * 24 23 22 41 41 H 1.09002 * 110.50383 * 118.88388 * 25 23 22 42 42 H 1.09001 * 110.50499 * 241.57449 * 25 23 22 43 43 H 1.09000 * 109.47296 * 0.02562 * 29 28 26 44 44 H 1.08991 * 109.47507 * 120.02488 * 29 28 26 45 45 H 1.09006 * 109.46826 * 240.01944 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9816 -0.8418 5 6 3.5419 1.4444 -0.1238 6 1 4.1471 1.8890 0.6523 7 6 4.1432 0.8785 -1.2280 8 7 3.4062 0.3376 -2.1734 9 14 6.0049 0.8815 -1.3818 10 1 6.5987 1.5464 -0.1942 11 1 6.4970 -0.5172 -1.4630 12 1 6.3990 1.6169 -2.6102 13 7 1.6524 2.0975 1.2518 14 6 0.4350 2.6643 1.3670 15 8 -0.3402 2.6318 0.4338 16 6 0.0402 3.3324 2.6429 17 8 0.8154 3.3644 3.5764 18 7 -1.1774 3.8988 2.7581 19 6 -1.5118 4.6078 3.9161 20 6 -2.3260 5.7311 3.8363 21 6 -2.6568 6.4322 4.9758 22 6 -2.1726 6.0228 6.2174 23 6 -1.3635 4.8954 6.2882 24 6 -1.0309 4.1927 5.1530 25 6 -1.0157 4.7123 7.7476 26 6 -1.7275 5.8535 8.4422 27 8 -1.7199 6.0898 9.6319 28 7 -2.3703 6.5551 7.4935 29 6 -3.1797 7.7455 7.7655 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 3.8293 -0.0608 -2.9500 36 1 2.2719 2.1232 1.9978 37 1 -1.8217 3.8145 2.0380 38 1 -2.7011 6.0562 2.8772 39 1 -3.2897 7.3046 4.9062 40 1 -0.3979 3.3203 5.2225 41 1 -1.3860 3.7537 8.1110 42 1 0.0616 4.7875 7.8957 43 1 -3.1691 7.9555 8.8350 44 1 -2.7673 8.5967 7.2241 45 1 -4.2050 7.5699 7.4397 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000193387524.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:42:24 Heat of formation + Delta-G solvation = -80.055336 kcal Electronic energy + Delta-G solvation = -29325.592675 eV Core-core repulsion = 25114.752819 eV Total energy + Delta-G solvation = -4210.839856 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.64020 -41.85778 -40.21748 -39.16621 -37.45767 -37.06127 -35.27621 -34.29745 -33.90954 -32.79550 -30.80163 -29.29449 -28.97190 -27.57013 -26.16203 -24.79829 -23.52970 -22.77438 -21.79046 -21.35006 -21.15802 -20.02423 -18.68305 -18.31416 -17.95926 -17.72542 -17.39396 -17.22378 -17.07919 -16.75390 -15.98224 -15.73026 -15.61785 -15.15689 -14.93904 -14.76903 -14.62679 -14.60632 -14.23894 -14.14749 -13.91506 -13.82477 -13.48086 -13.30685 -13.21870 -13.19267 -12.94011 -12.73340 -12.65368 -12.25498 -12.12169 -12.09422 -11.80380 -11.57906 -11.30761 -11.07687 -10.66778 -10.59694 -10.50330 -9.89960 -9.81102 -8.68357 -8.17819 -6.34241 -0.14459 0.29277 0.51228 1.28398 1.40425 1.44507 1.48083 1.58461 1.70804 2.20292 2.40216 2.69859 2.76323 3.10218 3.12501 3.33503 3.57802 3.79034 4.02164 4.13685 4.29868 4.37321 4.41219 4.49972 4.51250 4.56908 4.57692 4.73927 4.75464 4.85216 4.91936 4.95994 5.04450 5.22100 5.25427 5.28083 5.39114 5.41980 5.53971 5.58092 5.64216 5.71691 5.81502 5.98898 6.06181 6.13658 6.59801 6.69329 6.77356 6.84008 7.14080 7.37954 8.87384 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.020873 B = 0.002095 C = 0.002005 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1341.100796 B =13359.714438 C =13959.806373 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.124 4.124 3 C 0.276 3.724 4 H 0.016 0.984 5 C -0.551 4.551 6 H 0.068 0.932 7 C 0.022 3.978 8 N -0.909 5.909 9 Si 0.967 3.033 10 H -0.266 1.266 11 H -0.278 1.278 12 H -0.282 1.282 13 N -0.672 5.672 14 C 0.495 3.505 15 O -0.545 6.545 16 C 0.516 3.484 17 O -0.520 6.520 18 N -0.630 5.630 19 C 0.108 3.892 20 C -0.095 4.095 21 C -0.104 4.104 22 C 0.119 3.881 23 C -0.130 4.130 24 C -0.080 4.080 25 C -0.112 4.112 26 C 0.521 3.479 27 O -0.545 6.545 28 N -0.551 5.551 29 C 0.068 3.932 30 H 0.048 0.952 31 H 0.042 0.958 32 H 0.036 0.964 33 H 0.078 0.922 34 H 0.039 0.961 35 H 0.267 0.733 36 H 0.408 0.592 37 H 0.432 0.568 38 H 0.165 0.835 39 H 0.164 0.836 40 H 0.132 0.868 41 H 0.139 0.861 42 H 0.134 0.866 43 H 0.081 0.919 44 H 0.088 0.912 45 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.715 11.963 14.950 24.148 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.163 4.163 3 C 0.174 3.826 4 H 0.034 0.966 5 C -0.590 4.590 6 H 0.086 0.914 7 C -0.179 4.179 8 N -0.547 5.547 9 Si 0.792 3.208 10 H -0.190 1.190 11 H -0.204 1.204 12 H -0.208 1.208 13 N -0.321 5.321 14 C 0.275 3.725 15 O -0.425 6.425 16 C 0.298 3.702 17 O -0.395 6.395 18 N -0.278 5.278 19 C 0.014 3.986 20 C -0.115 4.115 21 C -0.125 4.125 22 C 0.023 3.977 23 C -0.134 4.134 24 C -0.101 4.101 25 C -0.150 4.150 26 C 0.312 3.688 27 O -0.423 6.423 28 N -0.272 5.272 29 C -0.072 4.072 30 H 0.067 0.933 31 H 0.061 0.939 32 H 0.055 0.945 33 H 0.096 0.904 34 H 0.058 0.942 35 H 0.076 0.924 36 H 0.244 0.756 37 H 0.272 0.728 38 H 0.183 0.817 39 H 0.181 0.819 40 H 0.150 0.850 41 H 0.157 0.843 42 H 0.151 0.849 43 H 0.100 0.900 44 H 0.107 0.893 45 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -14.715 12.076 15.450 24.517 hybrid contribution 1.045 -0.230 -0.409 1.145 sum -13.670 11.846 15.042 23.526 Atomic orbital electron populations 1.21707 0.96442 0.99675 1.00511 1.21823 0.94263 0.98563 1.01648 1.18625 0.93981 0.89587 0.80412 0.96639 1.21550 0.91337 1.39295 1.06774 0.91434 1.25662 1.03012 0.94280 0.94979 1.70011 1.36849 1.38071 1.09780 0.85374 0.79463 0.77856 0.78120 1.18968 1.20401 1.20798 1.46235 1.14504 1.53083 1.18301 1.20020 0.83645 0.80760 0.88052 1.90736 1.51474 1.59755 1.40502 1.20283 0.82493 0.79416 0.88002 1.90731 1.51821 1.57161 1.39811 1.42967 1.14620 1.50876 1.19291 1.17742 1.01230 0.94493 0.85130 1.20961 0.98455 0.91882 1.00225 1.20421 1.02224 1.02034 0.87777 1.18378 0.98645 0.94656 0.86045 1.19631 1.01607 0.97278 0.94834 1.20288 1.00011 1.00327 0.89454 1.21102 1.03831 0.99544 0.90552 1.20896 0.78474 0.84107 0.85332 1.90759 1.63760 1.72883 1.14928 1.45825 1.47368 1.28473 1.05581 1.22080 0.95881 0.85582 1.03664 0.93334 0.93909 0.94504 0.90415 0.94193 0.92413 0.75648 0.72764 0.81746 0.81881 0.84997 0.84290 0.84862 0.89998 0.89295 0.88973 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.15 8.51 71.98 0.61 -4.54 16 2 C -0.12 -5.76 5.45 30.60 0.17 -5.60 16 3 C 0.28 13.43 2.24 44.25 0.10 13.53 16 4 H 0.02 0.88 7.58 -2.39 -0.02 0.86 16 5 C -0.55 -28.39 8.73 25.60 0.22 -28.17 16 6 H 0.07 3.36 7.74 -2.91 -0.02 3.33 16 7 C 0.02 1.12 5.29 84.66 0.45 1.57 16 8 N -0.91 -49.67 11.30 21.45 0.24 -49.43 16 9 Si 0.97 41.25 29.54 68.60 2.03 43.27 16 10 H -0.27 -10.97 7.11 99.48 0.71 -10.26 16 11 H -0.28 -11.64 7.11 99.48 0.71 -10.93 16 12 H -0.28 -11.95 7.11 99.48 0.71 -11.25 16 13 N -0.67 -27.23 5.01 -447.55 -2.24 -29.47 16 14 C 0.50 18.13 6.45 87.23 0.56 18.70 16 15 O -0.55 -21.76 13.62 -3.28 -0.04 -21.81 16 16 C 0.52 15.50 7.73 87.23 0.67 16.18 16 17 O -0.52 -16.99 13.92 -3.34 -0.05 -17.04 16 18 N -0.63 -14.27 5.33 -304.64 -1.62 -15.89 16 19 C 0.11 2.16 6.31 38.23 0.24 2.41 16 20 C -0.09 -1.29 9.94 22.35 0.22 -1.07 16 21 C -0.10 -1.23 9.83 22.46 0.22 -1.01 16 22 C 0.12 1.91 6.70 38.34 0.26 2.17 16 23 C -0.13 -2.43 6.34 -19.71 -0.12 -2.56 16 24 C -0.08 -1.74 8.69 22.31 0.19 -1.55 16 25 C -0.11 -1.86 6.87 29.46 0.20 -1.66 16 26 C 0.52 10.72 8.24 87.94 0.72 11.44 16 27 O -0.55 -14.79 17.43 -3.07 -0.05 -14.84 16 28 N -0.55 -8.98 3.14 -653.96 -2.05 -11.04 16 29 C 0.07 0.68 10.86 127.77 1.39 2.07 16 30 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 31 H 0.04 1.66 5.64 -2.39 -0.01 1.64 16 32 H 0.04 1.59 7.85 -2.39 -0.02 1.57 16 33 H 0.08 4.05 5.95 -2.39 -0.01 4.03 16 34 H 0.04 1.77 8.14 -2.39 -0.02 1.76 16 35 H 0.27 13.78 8.31 -92.71 -0.77 13.01 16 36 H 0.41 15.47 8.01 -92.70 -0.74 14.73 16 37 H 0.43 8.29 8.30 -92.71 -0.77 7.52 16 38 H 0.17 1.36 8.06 -2.91 -0.02 1.34 16 39 H 0.16 0.89 8.06 -2.91 -0.02 0.87 16 40 H 0.13 3.28 6.24 -2.91 -0.02 3.26 16 41 H 0.14 1.87 8.14 -2.39 -0.02 1.85 16 42 H 0.13 2.01 8.14 -2.39 -0.02 1.99 16 43 H 0.08 0.98 7.57 -2.39 -0.02 0.96 16 44 H 0.09 0.58 8.14 -2.39 -0.02 0.56 16 45 H 0.09 0.54 8.14 -2.38 -0.02 0.52 16 Total: -1.00 -67.09 376.92 1.87 -65.22 By element: Atomic # 1 Polarization: 29.54 SS G_CDS: -0.45 Total: 29.10 kcal Atomic # 6 Polarization: 15.80 SS G_CDS: 6.11 Total: 21.92 kcal Atomic # 7 Polarization: -100.15 SS G_CDS: -5.68 Total: -105.83 kcal Atomic # 8 Polarization: -53.54 SS G_CDS: -0.14 Total: -53.68 kcal Atomic # 14 Polarization: 41.25 SS G_CDS: 2.03 Total: 43.27 kcal Total: -67.09 1.87 -65.22 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000193387524.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.831 kcal (2) G-P(sol) polarization free energy of solvation -67.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.925 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.869 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.225 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.055 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds