Wall clock time and date at job start Wed Apr 1 2020 04:02:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52995 * 109.46783 * 2 1 4 4 N 1.46502 * 109.47001 * 180.02562 * 3 2 1 5 5 C 1.36878 * 119.99859 * 264.00001 * 4 3 2 6 6 H 1.08004 * 119.99413 * 139.82505 * 5 4 3 7 7 C 1.39038 * 120.00159 * 319.83165 * 5 4 3 8 8 N 1.31368 * 120.00272 * 342.10502 * 7 5 4 9 9 Si 1.86799 * 120.00028 * 162.11150 * 7 5 4 10 10 H 1.48500 * 109.47285 * 89.99662 * 9 7 5 11 11 H 1.48497 * 109.47142 * 209.99740 * 9 7 5 12 12 H 1.48499 * 109.47358 * 329.99614 * 9 7 5 13 13 C 1.34776 * 120.00474 * 83.99920 * 4 3 2 14 14 O 1.21595 * 119.99468 * 4.44957 * 13 4 3 15 15 C 1.47716 * 120.00531 * 184.44341 * 13 4 3 16 16 C 1.39653 * 120.15049 * 324.73467 * 15 13 4 17 17 C 1.37939 * 119.84468 * 179.97438 * 16 15 13 18 18 C 1.38372 * 120.15506 * 0.25863 * 17 16 15 19 19 C 1.50696 * 119.84854 * 179.74423 * 18 17 16 20 20 C 1.52995 * 110.53526 * 272.82898 * 19 18 17 21 21 N 1.47318 * 110.59681 * 35.82784 * 19 18 17 22 22 C 1.34523 * 106.61738 * 118.52763 * 21 19 18 23 23 O 1.21543 * 123.76629 * 180.02562 * 22 21 19 24 24 N 1.33790 * 112.46423 * 359.97438 * 22 21 19 25 25 C 1.34768 * 111.64114 * 359.97438 * 24 22 21 26 26 O 1.21236 * 127.15766 * 180.02562 * 25 24 22 27 27 C 1.38377 * 120.30327 * 359.48150 * 18 17 16 28 28 C 1.37943 * 120.15171 * 0.51936 * 27 18 17 29 29 H 1.09002 * 109.46904 * 60.00340 * 1 2 3 30 30 H 1.09003 * 109.46601 * 180.02562 * 1 2 3 31 31 H 1.08994 * 109.46971 * 299.99599 * 1 2 3 32 32 H 1.09001 * 109.47223 * 239.99771 * 2 1 3 33 33 H 1.08995 * 109.46850 * 120.00046 * 2 1 3 34 34 H 1.08994 * 109.47547 * 60.00300 * 3 2 1 35 35 H 1.08995 * 109.47465 * 299.99669 * 3 2 1 36 36 H 0.96990 * 120.00323 * 179.97438 * 8 7 5 37 37 H 1.07996 * 120.07467 * 0.02562 * 16 15 13 38 38 H 1.08001 * 119.92086 * 179.97438 * 17 16 15 39 39 H 1.08994 * 109.47286 * 60.00330 * 20 19 18 40 40 H 1.08999 * 109.46984 * 180.02562 * 20 19 18 41 41 H 1.09002 * 109.47208 * 299.99870 * 20 19 18 42 42 H 0.97001 * 126.68794 * 298.49353 * 21 19 18 43 43 H 0.97000 * 124.18180 * 180.02562 * 24 22 21 44 44 H 1.08000 * 119.92700 * 180.23201 * 27 18 17 45 45 H 1.07996 * 120.07592 * 179.76313 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.1898 1.5663 1.1780 6 1 5.0788 0.9777 1.3503 7 6 3.7410 2.4496 2.1535 8 7 2.8968 3.4049 1.8363 9 14 4.3384 2.2780 3.9150 10 1 5.5694 3.0874 4.1013 11 1 3.2845 2.7589 4.8442 12 1 4.6361 0.8514 4.2001 13 6 4.1785 1.3207 -1.1617 14 8 3.5728 1.2922 -2.2156 15 6 5.6523 1.2220 -1.1539 16 6 6.3980 1.9341 -0.2120 17 6 7.7740 1.8369 -0.2101 18 6 8.4158 1.0404 -1.1419 19 6 9.9197 0.9437 -1.1372 20 6 10.5321 2.0647 -1.9793 21 7 10.4373 0.9847 0.2414 22 6 11.0748 -0.1818 0.4478 23 8 11.6222 -0.4769 1.4921 24 7 11.0381 -0.9811 -0.6244 25 6 10.3674 -0.4124 -1.6456 26 8 10.1648 -0.8864 -2.7429 27 6 7.6828 0.3278 -2.0746 28 6 6.3063 0.4158 -2.0879 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3632 -1.0277 0.0005 31 1 -0.3633 0.5137 0.8900 32 1 1.8934 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8899 34 1 1.6767 1.9563 0.8899 35 1 1.6767 1.9563 -0.8899 36 1 2.5834 4.0208 2.5168 37 1 5.8985 2.5588 0.5136 38 1 8.3519 2.3874 0.5174 39 1 10.2385 3.0302 -1.5676 40 1 11.6186 1.9782 -1.9643 41 1 10.1757 1.9839 -3.0062 42 1 10.3382 1.7113 0.8763 43 1 11.4434 -1.8616 -0.6619 44 1 8.1899 -0.2950 -2.7967 45 1 5.7356 -0.1379 -2.8188 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000267036912.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:02:47 Heat of formation + Delta-G solvation = -48.227651 kcal Electronic energy + Delta-G solvation = -30666.828335 eV Core-core repulsion = 26457.368631 eV Total energy + Delta-G solvation = -4209.459704 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.76339 -39.54429 -38.87816 -37.90265 -36.43328 -35.22233 -34.53584 -33.02343 -31.74844 -31.23680 -30.51020 -29.46013 -26.13502 -25.43807 -24.74397 -23.21428 -22.99959 -21.88956 -20.94309 -20.53439 -19.34466 -18.52106 -17.81343 -17.10212 -16.85838 -16.26866 -16.10351 -15.72843 -15.21016 -14.98000 -14.86310 -14.46972 -14.13177 -14.09823 -13.96204 -13.75814 -13.48132 -13.19122 -12.87914 -12.78964 -12.59854 -12.54057 -11.98336 -11.77644 -11.50109 -11.44996 -11.32337 -11.19565 -11.07440 -10.78720 -10.76476 -10.58684 -10.46367 -10.37887 -10.20803 -9.83499 -9.74983 -9.21583 -8.66212 -8.54723 -8.32367 -7.59734 -6.53404 -4.23338 1.24139 1.43658 1.81799 2.20973 2.80733 2.90338 3.00362 3.11942 3.15997 3.63461 3.71292 3.96087 4.24859 4.31858 4.61454 4.62078 4.89503 5.00041 5.23478 5.25494 5.34310 5.45746 5.69333 5.71644 5.74287 5.79607 5.80956 5.87692 5.97185 6.09145 6.22755 6.39747 6.46305 6.48241 6.54021 6.59102 6.65194 6.73749 6.74186 6.83450 7.01635 7.09246 7.15047 7.21561 7.32740 7.37101 7.80852 7.92819 8.21925 8.89103 9.34240 9.78245 10.47815 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.012437 B = 0.003554 C = 0.003057 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2250.856022 B = 7877.060538 C = 9156.384622 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.136 4.136 3 C 0.119 3.881 4 N -0.426 5.426 5 C -0.345 4.345 6 H 0.093 0.907 7 C 0.046 3.954 8 N -0.853 5.853 9 Si 0.909 3.091 10 H -0.273 1.273 11 H -0.280 1.280 12 H -0.267 1.267 13 C 0.504 3.496 14 O -0.598 6.598 15 C -0.078 4.078 16 C -0.067 4.067 17 C -0.117 4.117 18 C -0.103 4.103 19 C 0.169 3.831 20 C -0.142 4.142 21 N -0.712 5.712 22 C 0.707 3.293 23 O -0.546 6.546 24 N -0.680 5.680 25 C 0.539 3.461 26 O -0.459 6.459 27 C -0.128 4.128 28 C -0.078 4.078 29 H 0.050 0.950 30 H 0.045 0.955 31 H 0.051 0.949 32 H 0.053 0.947 33 H 0.058 0.942 34 H 0.101 0.899 35 H 0.055 0.945 36 H 0.273 0.727 37 H 0.165 0.835 38 H 0.118 0.882 39 H 0.084 0.916 40 H 0.068 0.932 41 H 0.087 0.913 42 H 0.441 0.559 43 H 0.432 0.568 44 H 0.135 0.865 45 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.717 -2.481 -2.496 12.234 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.174 4.174 3 C -0.004 4.004 4 N -0.142 5.142 5 C -0.473 4.473 6 H 0.111 0.889 7 C -0.161 4.161 8 N -0.488 5.488 9 Si 0.735 3.265 10 H -0.199 1.199 11 H -0.205 1.205 12 H -0.192 1.192 13 C 0.293 3.707 14 O -0.485 6.485 15 C -0.081 4.081 16 C -0.086 4.086 17 C -0.135 4.135 18 C -0.105 4.105 19 C 0.078 3.922 20 C -0.200 4.200 21 N -0.377 5.377 22 C 0.407 3.593 23 O -0.420 6.420 24 N -0.350 5.350 25 C 0.324 3.676 26 O -0.327 6.327 27 C -0.146 4.146 28 C -0.097 4.097 29 H 0.070 0.930 30 H 0.064 0.936 31 H 0.070 0.930 32 H 0.072 0.928 33 H 0.077 0.923 34 H 0.119 0.881 35 H 0.073 0.927 36 H 0.083 0.917 37 H 0.183 0.817 38 H 0.136 0.864 39 H 0.103 0.897 40 H 0.087 0.913 41 H 0.106 0.894 42 H 0.287 0.713 43 H 0.274 0.726 44 H 0.152 0.848 45 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 11.406 -2.655 -2.932 12.072 hybrid contribution 0.349 -0.169 1.340 1.395 sum 11.755 -2.823 -1.593 12.193 Atomic orbital electron populations 1.21653 0.96415 1.00540 1.01458 1.21855 0.94901 0.99304 1.01384 1.21396 0.81143 0.94461 1.03416 1.43310 1.04862 1.61116 1.04910 1.19485 1.12211 1.22651 0.92933 0.88907 1.25401 0.96819 0.93694 1.00181 1.69901 1.31041 1.13403 1.34447 0.86215 0.78783 0.79218 0.82324 1.19905 1.20518 1.19157 1.18330 0.86460 0.81707 0.84233 1.90632 1.69658 1.56944 1.31273 1.20230 0.94786 0.97429 0.95671 1.22239 0.92441 0.97199 0.96680 1.20746 0.94869 0.99576 0.98337 1.19283 0.90462 1.01509 0.99197 1.20159 0.93725 0.94979 0.83324 1.22005 1.00649 0.96858 1.00461 1.45683 1.57619 1.19018 1.15388 1.15811 0.79354 0.81099 0.83061 1.91058 1.48694 1.76272 1.25991 1.44304 1.54181 1.21656 1.14896 1.20649 0.76061 0.86959 0.83894 1.90796 1.53649 1.68695 1.19583 1.21090 0.94066 1.00311 0.99170 1.21173 0.93530 0.97461 0.97568 0.93047 0.93555 0.92964 0.92842 0.92313 0.88061 0.92652 0.91704 0.81730 0.86408 0.89735 0.91336 0.89396 0.71312 0.72595 0.84756 0.85488 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.32 9.91 37.16 0.37 -1.96 16 2 C -0.14 -2.69 6.21 -26.73 -0.17 -2.86 16 3 C 0.12 2.73 4.89 -4.04 -0.02 2.71 16 4 N -0.43 -10.23 2.51 -115.94 -0.29 -10.52 16 5 C -0.34 -8.06 6.20 -15.00 -0.09 -8.15 16 6 H 0.09 2.11 6.28 -52.48 -0.33 1.78 16 7 C 0.05 1.07 4.96 -17.45 -0.09 0.99 16 8 N -0.85 -20.91 11.53 55.50 0.64 -20.27 16 9 Si 0.91 18.07 29.59 -169.99 -5.03 13.04 16 10 H -0.27 -5.32 7.11 56.52 0.40 -4.92 16 11 H -0.28 -5.63 7.11 56.52 0.40 -5.23 16 12 H -0.27 -5.35 7.11 56.52 0.40 -4.95 16 13 C 0.50 12.11 7.32 -12.39 -0.09 12.02 16 14 O -0.60 -15.73 16.48 5.28 0.09 -15.65 16 15 C -0.08 -1.59 5.46 -104.97 -0.57 -2.17 16 16 C -0.07 -1.23 7.74 -39.16 -0.30 -1.54 16 17 C -0.12 -1.69 9.33 -39.64 -0.37 -2.06 16 18 C -0.10 -1.39 4.90 -104.52 -0.51 -1.90 16 19 C 0.17 1.77 1.16 -133.24 -0.15 1.62 16 20 C -0.14 -1.16 8.97 37.16 0.33 -0.82 16 21 N -0.71 -7.01 5.37 -54.02 -0.29 -7.30 16 22 C 0.71 8.25 8.99 -88.02 -0.79 7.46 16 23 O -0.55 -8.13 18.04 5.33 0.10 -8.03 16 24 N -0.68 -6.78 5.70 -15.79 -0.09 -6.87 16 25 C 0.54 6.04 6.95 -10.55 -0.07 5.97 16 26 O -0.46 -5.99 15.86 5.60 0.09 -5.90 16 27 C -0.13 -1.94 9.16 -39.64 -0.36 -2.30 16 28 C -0.08 -1.40 9.62 -39.16 -0.38 -1.78 16 29 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 30 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 31 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 32 H 0.05 1.11 8.14 -51.93 -0.42 0.68 16 33 H 0.06 1.17 8.14 -51.93 -0.42 0.74 16 34 H 0.10 2.43 5.68 -51.93 -0.29 2.13 16 35 H 0.06 1.33 7.55 -51.93 -0.39 0.94 16 36 H 0.27 6.32 8.31 -40.82 -0.34 5.98 16 37 H 0.17 3.32 5.68 -52.49 -0.30 3.02 16 38 H 0.12 1.35 7.09 -52.49 -0.37 0.98 16 39 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 41 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 42 H 0.44 3.57 8.17 -40.82 -0.33 3.23 16 43 H 0.43 3.34 8.96 -40.82 -0.37 2.97 16 44 H 0.13 1.92 5.58 -52.49 -0.29 1.63 16 45 H 0.13 2.26 8.01 -52.49 -0.42 1.84 16 LS Contribution 374.60 15.07 5.65 5.65 Total: -1.00 -30.16 374.60 -8.03 -38.19 By element: Atomic # 1 Polarization: 18.03 SS G_CDS: -5.62 Total: 12.42 kcal Atomic # 6 Polarization: 8.51 SS G_CDS: -3.27 Total: 5.24 kcal Atomic # 7 Polarization: -44.93 SS G_CDS: -0.03 Total: -44.97 kcal Atomic # 8 Polarization: -29.85 SS G_CDS: 0.27 Total: -29.58 kcal Atomic # 14 Polarization: 18.07 SS G_CDS: -5.03 Total: 13.04 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -30.16 -8.03 -38.19 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000267036912.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.033 kcal (2) G-P(sol) polarization free energy of solvation -30.164 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.197 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.031 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.195 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.228 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds