Wall clock time and date at job start Wed Apr 1 2020 04:02:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52995 * 109.46783 * 2 1 4 4 N 1.46502 * 109.47001 * 180.02562 * 3 2 1 5 5 C 1.36878 * 119.99859 * 264.00001 * 4 3 2 6 6 H 1.08004 * 119.99413 * 139.82505 * 5 4 3 7 7 C 1.39038 * 120.00159 * 319.83165 * 5 4 3 8 8 N 1.31368 * 120.00272 * 342.10502 * 7 5 4 9 9 Si 1.86799 * 120.00028 * 162.11150 * 7 5 4 10 10 H 1.48500 * 109.47285 * 89.99662 * 9 7 5 11 11 H 1.48497 * 109.47142 * 209.99740 * 9 7 5 12 12 H 1.48499 * 109.47358 * 329.99614 * 9 7 5 13 13 C 1.34776 * 120.00474 * 83.99920 * 4 3 2 14 14 O 1.21595 * 119.99468 * 4.44957 * 13 4 3 15 15 C 1.47716 * 120.00531 * 184.44341 * 13 4 3 16 16 C 1.39653 * 120.15049 * 324.73467 * 15 13 4 17 17 C 1.37939 * 119.84468 * 179.97438 * 16 15 13 18 18 C 1.38372 * 120.15506 * 0.25863 * 17 16 15 19 19 C 1.50696 * 119.84854 * 179.74423 * 18 17 16 20 20 C 1.52995 * 110.53526 * 272.82898 * 19 18 17 21 21 N 1.47318 * 110.59681 * 35.82784 * 19 18 17 22 22 C 1.34523 * 106.61738 * 118.52763 * 21 19 18 23 23 O 1.21543 * 123.76629 * 180.02562 * 22 21 19 24 24 N 1.33790 * 112.46423 * 359.97438 * 22 21 19 25 25 C 1.34768 * 111.64114 * 359.97438 * 24 22 21 26 26 O 1.21236 * 127.15766 * 180.02562 * 25 24 22 27 27 C 1.38377 * 120.30327 * 359.48150 * 18 17 16 28 28 C 1.37943 * 120.15171 * 0.51936 * 27 18 17 29 29 H 1.09002 * 109.46904 * 60.00340 * 1 2 3 30 30 H 1.09003 * 109.46601 * 180.02562 * 1 2 3 31 31 H 1.08994 * 109.46971 * 299.99599 * 1 2 3 32 32 H 1.09001 * 109.47223 * 239.99771 * 2 1 3 33 33 H 1.08995 * 109.46850 * 120.00046 * 2 1 3 34 34 H 1.08994 * 109.47547 * 60.00300 * 3 2 1 35 35 H 1.08995 * 109.47465 * 299.99669 * 3 2 1 36 36 H 0.96990 * 120.00323 * 179.97438 * 8 7 5 37 37 H 1.07996 * 120.07467 * 0.02562 * 16 15 13 38 38 H 1.08001 * 119.92086 * 179.97438 * 17 16 15 39 39 H 1.08994 * 109.47286 * 60.00330 * 20 19 18 40 40 H 1.08999 * 109.46984 * 180.02562 * 20 19 18 41 41 H 1.09002 * 109.47208 * 299.99870 * 20 19 18 42 42 H 0.97001 * 126.68794 * 298.49353 * 21 19 18 43 43 H 0.97000 * 124.18180 * 180.02562 * 24 22 21 44 44 H 1.08000 * 119.92700 * 180.23201 * 27 18 17 45 45 H 1.07996 * 120.07592 * 179.76313 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.1898 1.5663 1.1780 6 1 5.0788 0.9777 1.3503 7 6 3.7410 2.4496 2.1535 8 7 2.8968 3.4049 1.8363 9 14 4.3384 2.2780 3.9150 10 1 5.5694 3.0874 4.1013 11 1 3.2845 2.7589 4.8442 12 1 4.6361 0.8514 4.2001 13 6 4.1785 1.3207 -1.1617 14 8 3.5728 1.2922 -2.2156 15 6 5.6523 1.2220 -1.1539 16 6 6.3980 1.9341 -0.2120 17 6 7.7740 1.8369 -0.2101 18 6 8.4158 1.0404 -1.1419 19 6 9.9197 0.9437 -1.1372 20 6 10.5321 2.0647 -1.9793 21 7 10.4373 0.9847 0.2414 22 6 11.0748 -0.1818 0.4478 23 8 11.6222 -0.4769 1.4921 24 7 11.0381 -0.9811 -0.6244 25 6 10.3674 -0.4124 -1.6456 26 8 10.1648 -0.8864 -2.7429 27 6 7.6828 0.3278 -2.0746 28 6 6.3063 0.4158 -2.0879 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3632 -1.0277 0.0005 31 1 -0.3633 0.5137 0.8900 32 1 1.8934 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8899 34 1 1.6767 1.9563 0.8899 35 1 1.6767 1.9563 -0.8899 36 1 2.5834 4.0208 2.5168 37 1 5.8985 2.5588 0.5136 38 1 8.3519 2.3874 0.5174 39 1 10.2385 3.0302 -1.5676 40 1 11.6186 1.9782 -1.9643 41 1 10.1757 1.9839 -3.0062 42 1 10.3382 1.7113 0.8763 43 1 11.4434 -1.8616 -0.6619 44 1 8.1899 -0.2950 -2.7967 45 1 5.7356 -0.1379 -2.8188 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000267036912.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:02:46 Heat of formation + Delta-G solvation = -68.603263 kcal Electronic energy + Delta-G solvation = -30667.711888 eV Core-core repulsion = 26457.368631 eV Total energy + Delta-G solvation = -4210.343257 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -43.68177 -41.10204 -39.96144 -39.29048 -37.49110 -37.05041 -35.52305 -34.63521 -33.34975 -32.46920 -31.84822 -30.55183 -27.72354 -26.88589 -25.99023 -24.30549 -24.21829 -23.12171 -22.40267 -21.72970 -21.06233 -19.57983 -19.31363 -18.12062 -17.90962 -17.71012 -17.10814 -16.93308 -16.63039 -16.44707 -16.25040 -15.81583 -15.71036 -15.41139 -15.30478 -15.00680 -14.89922 -14.48880 -14.17331 -14.14333 -13.65495 -13.48155 -13.35494 -13.22090 -13.15801 -13.01594 -12.67299 -12.62834 -12.43575 -12.26403 -12.07120 -12.02689 -11.91120 -11.55768 -11.51641 -11.26840 -11.01690 -10.66888 -10.45669 -9.88847 -9.72381 -9.44894 -8.32609 -6.08599 -0.05652 0.44409 0.49064 1.37081 1.42402 1.50141 1.59832 1.89837 1.92228 2.12690 2.29372 2.76863 2.81422 2.90188 3.12159 3.28518 3.77334 3.96395 4.09464 4.11119 4.20290 4.22876 4.30909 4.48594 4.53214 4.61120 4.66189 4.74538 4.76664 4.90530 4.92203 5.01218 5.05680 5.14284 5.16712 5.18945 5.29731 5.36478 5.44222 5.44650 5.51385 5.68140 5.74637 5.81548 5.96218 6.00408 6.30083 6.39403 7.06726 7.07215 7.50014 7.95207 8.70424 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.012437 B = 0.003554 C = 0.003057 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2250.856022 B = 7877.060538 C = 9156.384622 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.126 4.126 3 C 0.120 3.880 4 N -0.436 5.436 5 C -0.351 4.351 6 H 0.098 0.902 7 C 0.013 3.987 8 N -0.887 5.887 9 Si 0.973 3.027 10 H -0.260 1.260 11 H -0.283 1.283 12 H -0.267 1.267 13 C 0.488 3.512 14 O -0.636 6.636 15 C -0.111 4.111 16 C -0.076 4.076 17 C -0.103 4.103 18 C -0.083 4.083 19 C 0.174 3.826 20 C -0.141 4.141 21 N -0.699 5.699 22 C 0.710 3.290 23 O -0.577 6.577 24 N -0.669 5.669 25 C 0.541 3.459 26 O -0.476 6.476 27 C -0.120 4.120 28 C -0.086 4.086 29 H 0.051 0.949 30 H 0.072 0.928 31 H 0.058 0.942 32 H 0.038 0.962 33 H 0.057 0.943 34 H 0.091 0.909 35 H 0.031 0.969 36 H 0.275 0.725 37 H 0.145 0.855 38 H 0.156 0.844 39 H 0.099 0.901 40 H 0.087 0.913 41 H 0.086 0.914 42 H 0.452 0.548 43 H 0.442 0.558 44 H 0.147 0.853 45 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.230 -2.669 -1.349 14.541 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.165 4.165 3 C -0.003 4.003 4 N -0.152 5.152 5 C -0.479 4.479 6 H 0.115 0.885 7 C -0.192 4.192 8 N -0.523 5.523 9 Si 0.796 3.204 10 H -0.185 1.185 11 H -0.208 1.208 12 H -0.191 1.191 13 C 0.279 3.721 14 O -0.526 6.526 15 C -0.114 4.114 16 C -0.094 4.094 17 C -0.121 4.121 18 C -0.085 4.085 19 C 0.083 3.917 20 C -0.199 4.199 21 N -0.364 5.364 22 C 0.409 3.591 23 O -0.453 6.453 24 N -0.340 5.340 25 C 0.327 3.673 26 O -0.346 6.346 27 C -0.139 4.139 28 C -0.105 4.105 29 H 0.071 0.929 30 H 0.091 0.909 31 H 0.077 0.923 32 H 0.057 0.943 33 H 0.076 0.924 34 H 0.109 0.891 35 H 0.050 0.950 36 H 0.085 0.915 37 H 0.162 0.838 38 H 0.173 0.827 39 H 0.118 0.882 40 H 0.106 0.894 41 H 0.105 0.895 42 H 0.299 0.701 43 H 0.286 0.714 44 H 0.165 0.835 45 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 13.929 -2.839 -1.778 14.326 hybrid contribution -0.358 -0.108 0.911 0.984 sum 13.571 -2.946 -0.867 13.914 Atomic orbital electron populations 1.21609 0.93424 1.02423 1.01859 1.21749 0.97485 0.96763 1.00470 1.21366 0.81234 0.96174 1.01545 1.43573 1.05288 1.60904 1.05396 1.19678 1.12550 1.22905 0.92719 0.88471 1.26122 0.96718 0.92941 1.03393 1.70000 1.32386 1.14287 1.35646 0.85235 0.78548 0.79108 0.77489 1.18512 1.20802 1.19092 1.19024 0.88319 0.81073 0.83691 1.90573 1.70961 1.58690 1.32364 1.20060 0.92737 1.00343 0.98244 1.22018 0.94072 0.97204 0.96119 1.21003 0.93310 0.99052 0.98695 1.19527 0.92299 0.99268 0.97402 1.20154 0.91514 0.95878 0.84131 1.22076 1.01749 0.96252 0.99817 1.45626 1.56752 1.18807 1.15214 1.15851 0.79088 0.81387 0.82745 1.91052 1.50124 1.76884 1.27255 1.44191 1.53685 1.22008 1.14112 1.20676 0.75922 0.87026 0.83719 1.90803 1.54388 1.69037 1.20322 1.21192 0.92765 1.00244 0.99651 1.21152 0.94801 0.97466 0.97069 0.92942 0.90891 0.92285 0.94339 0.92425 0.89122 0.95030 0.91543 0.83788 0.82662 0.88219 0.89399 0.89508 0.70057 0.71385 0.83509 0.86398 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.36 9.91 71.98 0.71 -3.65 16 2 C -0.13 -5.15 6.21 30.59 0.19 -4.96 16 3 C 0.12 5.80 4.89 86.38 0.42 6.22 16 4 N -0.44 -21.92 2.51 -638.97 -1.60 -23.52 16 5 C -0.35 -16.74 6.20 84.10 0.52 -16.22 16 6 H 0.10 4.47 6.28 -2.91 -0.02 4.45 16 7 C 0.01 0.58 4.96 84.95 0.42 1.00 16 8 N -0.89 -44.44 11.53 21.68 0.25 -44.19 16 9 Si 0.97 36.56 29.59 68.60 2.03 38.59 16 10 H -0.26 -9.20 7.11 99.48 0.71 -8.49 16 11 H -0.28 -10.69 7.11 99.48 0.71 -9.98 16 12 H -0.27 -9.93 7.11 99.48 0.71 -9.22 16 13 C 0.49 24.73 7.32 86.75 0.64 25.37 16 14 O -0.64 -35.55 16.48 -4.01 -0.07 -35.62 16 15 C -0.11 -4.66 5.46 -20.09 -0.11 -4.76 16 16 C -0.08 -2.75 7.74 22.54 0.17 -2.57 16 17 C -0.10 -2.69 9.33 22.23 0.21 -2.48 16 18 C -0.08 -2.01 4.90 -19.80 -0.10 -2.11 16 19 C 0.17 3.03 1.16 2.23 0.00 3.03 16 20 C -0.14 -1.72 8.97 71.98 0.65 -1.08 16 21 N -0.70 -11.06 5.37 -443.25 -2.38 -13.43 16 22 C 0.71 14.36 8.99 179.44 1.61 15.98 16 23 O -0.58 -15.74 18.04 -3.85 -0.07 -15.81 16 24 N -0.67 -11.41 5.70 -441.11 -2.52 -13.93 16 25 C 0.54 10.49 6.95 87.94 0.61 11.10 16 26 O -0.48 -11.20 15.86 -2.89 -0.05 -11.25 16 27 C -0.12 -3.47 9.16 22.23 0.20 -3.26 16 28 C -0.09 -3.12 9.62 22.54 0.22 -2.90 16 29 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 30 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 31 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 32 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 33 H 0.06 2.33 8.14 -2.39 -0.02 2.31 16 34 H 0.09 4.54 5.68 -2.39 -0.01 4.53 16 35 H 0.03 1.62 7.55 -2.39 -0.02 1.60 16 36 H 0.27 12.94 8.31 -92.72 -0.77 12.17 16 37 H 0.14 5.86 5.68 -2.91 -0.02 5.85 16 38 H 0.16 2.89 7.09 -2.91 -0.02 2.87 16 39 H 0.10 0.97 8.14 -2.39 -0.02 0.95 16 40 H 0.09 0.80 8.14 -2.39 -0.02 0.78 16 41 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 42 H 0.45 5.33 8.17 -92.71 -0.76 4.57 16 43 H 0.44 5.72 8.96 -92.71 -0.83 4.89 16 44 H 0.15 3.92 5.58 -2.91 -0.02 3.90 16 45 H 0.12 4.40 8.01 -2.91 -0.02 4.38 16 Total: -1.00 -68.21 374.60 1.45 -66.76 By element: Atomic # 1 Polarization: 34.23 SS G_CDS: -0.52 Total: 33.71 kcal Atomic # 6 Polarization: 12.32 SS G_CDS: 6.37 Total: 18.70 kcal Atomic # 7 Polarization: -88.83 SS G_CDS: -6.25 Total: -95.07 kcal Atomic # 8 Polarization: -62.49 SS G_CDS: -0.18 Total: -62.68 kcal Atomic # 14 Polarization: 36.56 SS G_CDS: 2.03 Total: 38.59 kcal Total: -68.21 1.45 -66.76 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000267036912.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.847 kcal (2) G-P(sol) polarization free energy of solvation -68.208 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.055 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.451 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.756 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.603 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds