Wall clock time and date at job start Wed Apr 1 2020 04:03:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31005 * 1 3 3 C 1.50697 * 120.00178 * 2 1 4 4 N 1.46500 * 109.47035 * 125.00294 * 3 2 1 5 5 C 1.34778 * 119.99925 * 179.97438 * 4 3 2 6 6 O 1.21585 * 120.00047 * 359.97438 * 5 4 3 7 7 C 1.47605 * 119.99857 * 179.97438 * 5 4 3 8 8 C 1.39756 * 120.06553 * 179.97438 * 7 5 4 9 9 C 1.37661 * 119.93107 * 180.30002 * 8 7 5 10 10 C 1.39179 * 120.06376 * 359.44647 * 9 8 7 11 11 N 1.39284 * 119.92924 * 180.25285 * 10 9 8 12 12 C 1.34773 * 119.99641 * 33.75578 * 11 10 9 13 13 O 1.21361 * 120.00359 * 5.27878 * 12 11 10 14 14 C 1.49359 * 119.99851 * 185.27231 * 12 11 10 15 15 O 1.21361 * 120.00223 * 0.02562 * 14 12 11 16 16 N 1.34782 * 120.00068 * 180.02562 * 14 12 11 17 17 C 1.46497 * 119.99971 * 180.02562 * 16 14 12 18 18 C 1.53002 * 109.47424 * 179.97438 * 17 16 14 19 19 C 1.50697 * 109.47317 * 179.97438 * 18 17 16 20 20 H 1.07999 * 119.99990 * 359.97438 * 19 18 17 21 21 C 1.37875 * 119.99742 * 179.97438 * 19 18 17 22 22 N 1.31521 * 120.00383 * 0.02562 * 21 19 18 23 23 Si 1.86799 * 119.99993 * 179.97438 * 21 19 18 24 24 H 1.48506 * 109.46855 * 90.00086 * 23 21 19 25 25 H 1.48504 * 109.47385 * 210.00133 * 23 21 19 26 26 H 1.48496 * 109.47355 * 330.00398 * 23 21 19 27 27 C 1.39176 * 120.14283 * 0.55560 * 10 9 8 28 28 C 1.37666 * 120.06505 * 359.72213 * 27 10 9 29 29 H 1.07988 * 120.00390 * 180.02562 * 1 2 3 30 30 H 1.08007 * 119.99489 * 0.02562 * 1 2 3 31 31 H 1.08007 * 119.99489 * 179.97438 * 2 1 3 32 32 H 1.08997 * 109.47219 * 4.99502 * 3 2 1 33 33 H 1.09008 * 109.46647 * 244.99650 * 3 2 1 34 34 H 0.96998 * 120.00458 * 359.97438 * 4 3 2 35 35 H 1.08003 * 120.03290 * 0.02709 * 8 7 5 36 36 H 1.07995 * 119.96671 * 179.70386 * 9 8 7 37 37 H 0.96993 * 120.00200 * 213.75427 * 11 10 9 38 38 H 0.96998 * 120.00000 * 0.02562 * 16 14 12 39 39 H 1.09000 * 109.47234 * 300.00152 * 17 16 14 40 40 H 1.08998 * 109.47462 * 60.00039 * 17 16 14 41 41 H 1.09000 * 109.47118 * 300.00320 * 18 17 16 42 42 H 1.09006 * 109.46504 * 59.99918 * 18 17 16 43 43 H 0.97000 * 120.00199 * 179.97438 * 22 21 19 44 44 H 1.07995 * 119.97240 * 179.70164 * 27 10 9 45 45 H 1.07998 * 120.03621 * 179.97438 * 28 27 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 7 2.9939 1.3318 1.1314 5 6 3.7792 2.4085 1.3328 6 8 3.7158 3.3574 0.5753 7 6 4.7161 2.4356 2.4731 8 6 5.5314 3.5511 2.6830 9 6 6.4086 3.5709 3.7437 10 6 6.4758 2.4863 4.6133 11 7 7.3606 2.5115 5.6887 12 6 7.6308 3.6756 6.3117 13 8 7.0324 4.6842 5.9995 14 6 8.6666 3.7244 7.3867 15 8 9.2653 2.7159 7.6988 16 7 8.9365 4.8885 8.0102 17 6 9.9529 4.9364 9.0642 18 6 10.0629 6.3645 9.6021 19 6 11.1080 6.4137 10.6867 20 1 11.6402 5.5160 10.9649 21 6 11.3847 7.6047 11.3238 22 7 10.7363 8.6977 10.9854 23 14 12.6796 7.6655 12.6688 24 1 14.0039 7.9660 12.0676 25 1 12.3280 8.7261 13.6470 26 1 12.7366 6.3530 13.3609 27 6 5.6652 1.3739 4.4070 28 6 4.7900 1.3457 3.3447 29 1 -0.5400 -0.9352 0.0004 30 1 -0.5400 0.9354 -0.0004 31 1 1.8500 -0.9354 0.0004 32 1 1.3587 2.1316 0.0895 33 1 2.6214 1.4024 -0.9314 34 1 3.0447 0.5746 1.7355 35 1 5.4765 4.3949 2.0111 36 1 7.0424 4.4306 3.9036 37 1 7.7823 1.6914 5.9891 38 1 8.4578 5.6945 7.7611 39 1 9.6690 4.2638 9.8735 40 1 10.9150 4.6274 8.6555 41 1 10.3470 7.0368 8.7925 42 1 9.1009 6.6739 10.0106 43 1 10.9307 9.5355 11.4339 44 1 5.7230 0.5318 5.0807 45 1 4.1615 0.4821 3.1848 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273097261.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:03:38 Heat of formation + Delta-G solvation = -60.275983 kcal Electronic energy + Delta-G solvation = -27509.709499 eV Core-core repulsion = 23299.727340 eV Total energy + Delta-G solvation = -4209.982159 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.26975 -40.36182 -39.13183 -38.04593 -36.28807 -35.64929 -34.79959 -33.37390 -32.91992 -31.37212 -30.50510 -29.87186 -26.98947 -25.88594 -24.48914 -23.21513 -22.85339 -21.24677 -21.02986 -20.54005 -20.27634 -18.85393 -18.29298 -17.62193 -16.80956 -16.65204 -16.11725 -16.04365 -16.02233 -15.47697 -15.11805 -14.92653 -14.76640 -14.54227 -14.30258 -14.22086 -13.88630 -13.73828 -13.56460 -13.29546 -13.09713 -12.89709 -12.73812 -12.36352 -11.81703 -11.74226 -11.54519 -11.29839 -11.10338 -10.78240 -10.70566 -10.56368 -10.46621 -10.11216 -9.89976 -9.57961 -9.52698 -9.40047 -9.28890 -8.82575 -8.57528 -8.46479 -6.13924 -4.18054 0.33178 0.99130 1.38738 1.47982 2.21317 2.51666 2.87240 3.18270 3.26607 3.33133 3.36285 3.52428 3.61264 4.16345 4.31875 4.35938 4.40677 4.48647 4.50353 4.55855 4.88294 4.98709 5.01779 5.11492 5.20735 5.23147 5.26571 5.57508 5.66110 5.81868 5.83078 5.92256 5.96114 6.03608 6.08625 6.09657 6.15368 6.44538 6.50101 6.59707 6.76271 7.04055 7.33022 7.47870 7.51588 7.69374 7.80493 7.82413 8.07931 8.23131 8.87433 9.47298 10.97470 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.035417 B = 0.001412 C = 0.001381 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 790.388233 B =19825.849072 C =20276.268197 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.180 4.180 3 C 0.146 3.854 4 N -0.727 5.727 5 C 0.562 3.438 6 O -0.537 6.537 7 C -0.158 4.158 8 C -0.034 4.034 9 C -0.130 4.130 10 C 0.179 3.821 11 N -0.651 5.651 12 C 0.509 3.491 13 O -0.492 6.492 14 C 0.500 3.500 15 O -0.529 6.529 16 N -0.681 5.681 17 C 0.118 3.882 18 C 0.011 3.989 19 C -0.525 4.525 20 H 0.060 0.940 21 C 0.060 3.940 22 N -0.892 5.892 23 Si 0.898 3.102 24 H -0.279 1.279 25 H -0.285 1.285 26 H -0.272 1.272 27 C -0.152 4.152 28 C -0.064 4.064 29 H 0.104 0.896 30 H 0.101 0.899 31 H 0.116 0.884 32 H 0.073 0.927 33 H 0.078 0.922 34 H 0.401 0.599 35 H 0.142 0.858 36 H 0.144 0.856 37 H 0.426 0.574 38 H 0.412 0.588 39 H 0.065 0.935 40 H 0.065 0.935 41 H 0.026 0.974 42 H 0.026 0.974 43 H 0.263 0.737 44 H 0.136 0.864 45 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.781 -19.841 -20.602 33.679 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.198 4.198 3 C 0.023 3.977 4 N -0.380 5.380 5 C 0.351 3.649 6 O -0.414 6.414 7 C -0.162 4.162 8 C -0.053 4.053 9 C -0.150 4.150 10 C 0.084 3.916 11 N -0.298 5.298 12 C 0.292 3.708 13 O -0.364 6.364 14 C 0.279 3.721 15 O -0.406 6.406 16 N -0.332 5.332 17 C -0.003 4.003 18 C -0.027 4.027 19 C -0.564 4.564 20 H 0.079 0.921 21 C -0.142 4.142 22 N -0.530 5.530 23 Si 0.726 3.274 24 H -0.205 1.205 25 H -0.211 1.211 26 H -0.197 1.197 27 C -0.172 4.172 28 C -0.083 4.083 29 H 0.122 0.878 30 H 0.119 0.881 31 H 0.134 0.866 32 H 0.091 0.909 33 H 0.096 0.904 34 H 0.237 0.763 35 H 0.159 0.841 36 H 0.162 0.838 37 H 0.264 0.736 38 H 0.248 0.752 39 H 0.083 0.917 40 H 0.083 0.917 41 H 0.044 0.956 42 H 0.044 0.956 43 H 0.073 0.927 44 H 0.154 0.846 45 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -17.771 -18.893 -21.032 33.393 hybrid contribution 0.632 -0.351 1.097 1.314 sum -17.139 -19.244 -19.935 32.580 Atomic orbital electron populations 1.24018 0.95787 1.02572 0.97712 1.23003 0.96271 0.98055 1.02457 1.20427 0.91787 0.95701 0.89735 1.45886 1.41073 1.20057 1.30953 1.18238 0.79949 0.82166 0.84565 1.90796 1.68345 1.35272 1.47032 1.19835 1.01453 0.96922 0.98019 1.21148 0.91791 0.96788 0.95582 1.21211 1.00903 0.99343 0.93590 1.17976 0.90771 0.95722 0.87176 1.43188 1.43799 1.12043 1.30729 1.20742 0.83584 0.83386 0.83122 1.90800 1.48519 1.33563 1.63530 1.19678 0.83925 0.85258 0.83269 1.90760 1.51197 1.33827 1.64861 1.46257 1.39909 1.10148 1.36895 1.21996 0.88759 1.02273 0.87316 1.19366 0.98276 0.88447 0.96592 1.20995 1.21028 0.95162 1.19182 0.92141 1.24995 0.96405 0.95556 0.97227 1.69957 1.41284 0.99666 1.42084 0.86496 0.81586 0.77890 0.81478 1.20522 1.21123 1.19716 1.20834 0.97107 0.99005 1.00247 1.21000 0.96996 0.97013 0.93307 0.87771 0.88067 0.86599 0.90859 0.90439 0.76349 0.84067 0.83804 0.73575 0.75245 0.91652 0.91652 0.95606 0.95613 0.92724 0.84606 0.85268 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.56 14.32 29.01 0.42 -0.14 16 2 C -0.18 -0.69 9.63 -36.03 -0.35 -1.03 16 3 C 0.15 0.87 6.11 -5.20 -0.03 0.84 16 4 N -0.73 -4.73 5.50 -62.51 -0.34 -5.07 16 5 C 0.56 5.59 7.76 -12.44 -0.10 5.49 16 6 O -0.54 -7.32 16.34 5.29 0.09 -7.24 16 7 C -0.16 -1.46 5.88 -104.94 -0.62 -2.08 16 8 C -0.03 -0.35 9.58 -39.23 -0.38 -0.73 16 9 C -0.13 -1.44 8.62 -39.44 -0.34 -1.79 16 10 C 0.18 1.80 6.27 -83.78 -0.53 1.28 16 11 N -0.65 -6.87 5.30 -10.29 -0.05 -6.92 16 12 C 0.51 6.91 7.61 -11.63 -0.09 6.82 16 13 O -0.49 -7.52 14.17 5.49 0.08 -7.44 16 14 C 0.50 7.86 7.89 -11.63 -0.09 7.77 16 15 O -0.53 -9.17 16.48 5.49 0.09 -9.08 16 16 N -0.68 -11.56 5.55 -60.76 -0.34 -11.89 16 17 C 0.12 2.34 5.61 -4.04 -0.02 2.32 16 18 C 0.01 0.26 5.09 -27.88 -0.14 0.11 16 19 C -0.53 -14.11 9.11 -34.44 -0.31 -14.43 16 20 H 0.06 1.58 7.74 -52.49 -0.41 1.17 16 21 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 22 N -0.89 -25.70 13.29 55.43 0.74 -24.97 16 23 Si 0.90 20.93 29.54 -169.99 -5.02 15.91 16 24 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 25 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 26 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 27 C -0.15 -1.12 9.94 -39.44 -0.39 -1.52 16 28 C -0.06 -0.43 9.53 -39.23 -0.37 -0.80 16 29 H 0.10 0.24 8.06 -52.49 -0.42 -0.19 16 30 H 0.10 0.34 7.84 -52.48 -0.41 -0.07 16 31 H 0.12 0.31 8.06 -52.48 -0.42 -0.11 16 32 H 0.07 0.50 7.79 -51.93 -0.40 0.09 16 33 H 0.08 0.51 8.14 -51.92 -0.42 0.09 16 34 H 0.40 1.52 6.48 -40.82 -0.26 1.26 16 35 H 0.14 1.48 7.64 -52.48 -0.40 1.08 16 36 H 0.14 1.74 6.43 -52.49 -0.34 1.40 16 37 H 0.43 3.68 8.29 -40.82 -0.34 3.35 16 38 H 0.41 6.63 7.94 -40.82 -0.32 6.30 16 39 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 40 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 41 H 0.03 0.65 8.14 -51.93 -0.42 0.22 16 42 H 0.03 0.65 8.14 -51.93 -0.42 0.22 16 43 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 44 H 0.14 0.67 8.06 -52.49 -0.42 0.25 16 45 H 0.13 0.43 6.39 -52.49 -0.34 0.09 16 LS Contribution 395.64 15.07 5.96 5.96 Total: -1.00 -33.35 395.64 -7.98 -41.33 By element: Atomic # 1 Polarization: 11.46 SS G_CDS: -5.74 Total: 5.72 kcal Atomic # 6 Polarization: 7.13 SS G_CDS: -3.44 Total: 3.69 kcal Atomic # 7 Polarization: -48.85 SS G_CDS: 0.00 Total: -48.85 kcal Atomic # 8 Polarization: -24.02 SS G_CDS: 0.25 Total: -23.76 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.91 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -33.35 -7.98 -41.33 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273097261.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.942 kcal (2) G-P(sol) polarization free energy of solvation -33.351 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.293 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.983 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.334 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.276 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds