Wall clock time and date at job start Wed Apr 1 2020 04:03:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31005 * 1 3 3 C 1.50697 * 120.00178 * 2 1 4 4 N 1.46500 * 109.47035 * 125.00294 * 3 2 1 5 5 C 1.34778 * 119.99925 * 179.97438 * 4 3 2 6 6 O 1.21585 * 120.00047 * 359.97438 * 5 4 3 7 7 C 1.47605 * 119.99857 * 179.97438 * 5 4 3 8 8 C 1.39756 * 120.06553 * 179.97438 * 7 5 4 9 9 C 1.37661 * 119.93107 * 180.30002 * 8 7 5 10 10 C 1.39179 * 120.06376 * 359.44647 * 9 8 7 11 11 N 1.39284 * 119.92924 * 180.25285 * 10 9 8 12 12 C 1.34773 * 119.99641 * 33.75578 * 11 10 9 13 13 O 1.21361 * 120.00359 * 5.27878 * 12 11 10 14 14 C 1.49359 * 119.99851 * 185.27231 * 12 11 10 15 15 O 1.21361 * 120.00223 * 0.02562 * 14 12 11 16 16 N 1.34782 * 120.00068 * 180.02562 * 14 12 11 17 17 C 1.46497 * 119.99971 * 180.02562 * 16 14 12 18 18 C 1.53002 * 109.47424 * 179.97438 * 17 16 14 19 19 C 1.50697 * 109.47317 * 179.97438 * 18 17 16 20 20 H 1.07999 * 119.99990 * 359.97438 * 19 18 17 21 21 C 1.37875 * 119.99742 * 179.97438 * 19 18 17 22 22 N 1.31521 * 120.00383 * 0.02562 * 21 19 18 23 23 Si 1.86799 * 119.99993 * 179.97438 * 21 19 18 24 24 H 1.48506 * 109.46855 * 90.00086 * 23 21 19 25 25 H 1.48504 * 109.47385 * 210.00133 * 23 21 19 26 26 H 1.48496 * 109.47355 * 330.00398 * 23 21 19 27 27 C 1.39176 * 120.14283 * 0.55560 * 10 9 8 28 28 C 1.37666 * 120.06505 * 359.72213 * 27 10 9 29 29 H 1.07988 * 120.00390 * 180.02562 * 1 2 3 30 30 H 1.08007 * 119.99489 * 0.02562 * 1 2 3 31 31 H 1.08007 * 119.99489 * 179.97438 * 2 1 3 32 32 H 1.08997 * 109.47219 * 4.99502 * 3 2 1 33 33 H 1.09008 * 109.46647 * 244.99650 * 3 2 1 34 34 H 0.96998 * 120.00458 * 359.97438 * 4 3 2 35 35 H 1.08003 * 120.03290 * 0.02709 * 8 7 5 36 36 H 1.07995 * 119.96671 * 179.70386 * 9 8 7 37 37 H 0.96993 * 120.00200 * 213.75427 * 11 10 9 38 38 H 0.96998 * 120.00000 * 0.02562 * 16 14 12 39 39 H 1.09000 * 109.47234 * 300.00152 * 17 16 14 40 40 H 1.08998 * 109.47462 * 60.00039 * 17 16 14 41 41 H 1.09000 * 109.47118 * 300.00320 * 18 17 16 42 42 H 1.09006 * 109.46504 * 59.99918 * 18 17 16 43 43 H 0.97000 * 120.00199 * 179.97438 * 22 21 19 44 44 H 1.07995 * 119.97240 * 179.70164 * 27 10 9 45 45 H 1.07998 * 120.03621 * 179.97438 * 28 27 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 7 2.9939 1.3318 1.1314 5 6 3.7792 2.4085 1.3328 6 8 3.7158 3.3574 0.5753 7 6 4.7161 2.4356 2.4731 8 6 5.5314 3.5511 2.6830 9 6 6.4086 3.5709 3.7437 10 6 6.4758 2.4863 4.6133 11 7 7.3606 2.5115 5.6887 12 6 7.6308 3.6756 6.3117 13 8 7.0324 4.6842 5.9995 14 6 8.6666 3.7244 7.3867 15 8 9.2653 2.7159 7.6988 16 7 8.9365 4.8885 8.0102 17 6 9.9529 4.9364 9.0642 18 6 10.0629 6.3645 9.6021 19 6 11.1080 6.4137 10.6867 20 1 11.6402 5.5160 10.9649 21 6 11.3847 7.6047 11.3238 22 7 10.7363 8.6977 10.9854 23 14 12.6796 7.6655 12.6688 24 1 14.0039 7.9660 12.0676 25 1 12.3280 8.7261 13.6470 26 1 12.7366 6.3530 13.3609 27 6 5.6652 1.3739 4.4070 28 6 4.7900 1.3457 3.3447 29 1 -0.5400 -0.9352 0.0004 30 1 -0.5400 0.9354 -0.0004 31 1 1.8500 -0.9354 0.0004 32 1 1.3587 2.1316 0.0895 33 1 2.6214 1.4024 -0.9314 34 1 3.0447 0.5746 1.7355 35 1 5.4765 4.3949 2.0111 36 1 7.0424 4.4306 3.9036 37 1 7.7823 1.6914 5.9891 38 1 8.4578 5.6945 7.7611 39 1 9.6690 4.2638 9.8735 40 1 10.9150 4.6274 8.6555 41 1 10.3470 7.0368 8.7925 42 1 9.1009 6.6739 10.0106 43 1 10.9307 9.5355 11.4339 44 1 5.7230 0.5318 5.0807 45 1 4.1615 0.4821 3.1848 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273097261.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:03:37 Heat of formation + Delta-G solvation = -84.634139 kcal Electronic energy + Delta-G solvation = -27510.765748 eV Core-core repulsion = 23299.727340 eV Total energy + Delta-G solvation = -4211.038408 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.28297 -41.21138 -40.22119 -39.02252 -37.00540 -36.83260 -36.01464 -34.82157 -33.88702 -32.06905 -31.74551 -31.20841 -27.87257 -27.12282 -25.79875 -24.12095 -23.76063 -22.82706 -21.86424 -21.38732 -20.95158 -19.95744 -19.01267 -18.65539 -18.42776 -17.56984 -17.39242 -17.16800 -16.61946 -16.52734 -16.36032 -16.14366 -16.03310 -15.44707 -15.35358 -15.13062 -14.85546 -14.63395 -14.44443 -14.30870 -14.13380 -13.90391 -13.75930 -13.34913 -13.26522 -12.94960 -12.90482 -12.53236 -12.37172 -12.28993 -12.03941 -11.70570 -11.62593 -11.44126 -11.27991 -10.81285 -10.61773 -10.56433 -10.24790 -10.12360 -10.09364 -9.37003 -8.23476 -6.34705 -0.49159 0.28099 0.30760 1.11147 1.17316 1.43976 1.44087 1.55531 1.69927 2.02864 2.29039 2.37985 2.53481 2.78541 3.11985 3.26173 3.69727 3.72576 3.85128 3.89660 4.16976 4.18941 4.29121 4.36396 4.37223 4.45149 4.56410 4.73894 4.81183 4.91143 4.94341 5.01527 5.02194 5.09053 5.16966 5.28023 5.29926 5.41951 5.54678 5.66004 5.69144 5.76564 5.78343 5.83993 6.12287 6.24693 6.47405 6.56049 6.76791 6.82734 7.13286 7.35236 8.88459 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.035417 B = 0.001412 C = 0.001381 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 790.388233 B =19825.849072 C =20276.268197 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.181 4.181 3 C 0.144 3.856 4 N -0.708 5.708 5 C 0.559 3.441 6 O -0.584 6.584 7 C -0.163 4.163 8 C -0.049 4.049 9 C -0.145 4.145 10 C 0.161 3.839 11 N -0.632 5.632 12 C 0.517 3.483 13 O -0.514 6.514 14 C 0.506 3.494 15 O -0.541 6.541 16 N -0.685 5.685 17 C 0.138 3.862 18 C 0.017 3.983 19 C -0.545 4.545 20 H 0.066 0.934 21 C 0.006 3.994 22 N -0.929 5.929 23 Si 0.966 3.034 24 H -0.273 1.273 25 H -0.283 1.283 26 H -0.262 1.262 27 C -0.136 4.136 28 C -0.047 4.047 29 H 0.120 0.880 30 H 0.097 0.903 31 H 0.134 0.866 32 H 0.061 0.939 33 H 0.068 0.932 34 H 0.417 0.583 35 H 0.128 0.872 36 H 0.125 0.875 37 H 0.437 0.563 38 H 0.415 0.585 39 H 0.065 0.935 40 H 0.064 0.936 41 H 0.007 0.993 42 H 0.008 0.992 43 H 0.265 0.735 44 H 0.172 0.828 45 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.523 -23.319 -20.286 36.033 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.199 4.199 3 C 0.021 3.979 4 N -0.360 5.360 5 C 0.347 3.653 6 O -0.465 6.465 7 C -0.166 4.166 8 C -0.069 4.069 9 C -0.165 4.165 10 C 0.066 3.934 11 N -0.279 5.279 12 C 0.299 3.701 13 O -0.388 6.388 14 C 0.286 3.714 15 O -0.420 6.420 16 N -0.337 5.337 17 C 0.015 3.985 18 C -0.020 4.020 19 C -0.583 4.583 20 H 0.084 0.916 21 C -0.193 4.193 22 N -0.568 5.568 23 Si 0.791 3.209 24 H -0.199 1.199 25 H -0.209 1.209 26 H -0.186 1.186 27 C -0.155 4.155 28 C -0.066 4.066 29 H 0.138 0.862 30 H 0.115 0.885 31 H 0.152 0.848 32 H 0.079 0.921 33 H 0.087 0.913 34 H 0.256 0.744 35 H 0.146 0.854 36 H 0.142 0.858 37 H 0.277 0.723 38 H 0.252 0.748 39 H 0.084 0.916 40 H 0.083 0.917 41 H 0.026 0.974 42 H 0.026 0.974 43 H 0.074 0.926 44 H 0.190 0.810 45 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -18.536 -22.461 -20.729 35.746 hybrid contribution 0.758 0.656 0.892 1.341 sum -17.778 -21.805 -19.837 34.424 Atomic orbital electron populations 1.24190 0.95781 1.03221 0.96631 1.22944 0.96275 0.97347 1.03326 1.20467 0.91492 0.96842 0.89115 1.45774 1.39800 1.19446 1.31007 1.18419 0.80234 0.82305 0.84296 1.90775 1.69877 1.37184 1.48690 1.19916 1.00983 0.97356 0.98385 1.21081 0.92741 0.97432 0.95652 1.21085 1.01318 0.99544 0.94595 1.18162 0.91743 0.96598 0.86904 1.42994 1.43427 1.11310 1.30181 1.20199 0.83046 0.84110 0.82761 1.90811 1.49291 1.34528 1.64145 1.19945 0.83919 0.84338 0.83199 1.90748 1.51766 1.34109 1.65335 1.46071 1.39725 1.11071 1.36788 1.21518 0.89608 0.99333 0.88032 1.19188 0.96670 0.90647 0.95525 1.21457 1.21558 0.95488 1.19803 0.91573 1.25898 0.98541 0.95192 0.99635 1.70079 1.42968 1.00285 1.43484 0.85424 0.78809 0.78208 0.78477 1.19857 1.20868 1.18645 1.21215 0.95354 0.98610 1.00360 1.21424 0.96496 0.97094 0.91629 0.86162 0.88464 0.84814 0.92052 0.91337 0.74433 0.85434 0.85753 0.72259 0.74834 0.91640 0.91747 0.97446 0.97383 0.92618 0.81025 0.80901 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.75 14.32 67.78 0.97 0.22 16 2 C -0.18 -0.96 9.63 25.64 0.25 -0.72 16 3 C 0.14 1.57 6.11 85.63 0.52 2.09 16 4 N -0.71 -7.85 5.50 -469.93 -2.58 -10.43 16 5 C 0.56 10.78 7.76 86.72 0.67 11.45 16 6 O -0.58 -16.56 16.34 -3.98 -0.07 -16.63 16 7 C -0.16 -2.81 5.88 -20.07 -0.12 -2.93 16 8 C -0.05 -1.08 9.58 22.50 0.22 -0.86 16 9 C -0.15 -3.29 8.62 22.36 0.19 -3.10 16 10 C 0.16 2.98 6.27 38.41 0.24 3.22 16 11 N -0.63 -12.35 5.30 -304.81 -1.62 -13.97 16 12 C 0.52 13.80 7.61 87.24 0.66 14.46 16 13 O -0.51 -15.96 14.17 -3.28 -0.05 -16.00 16 14 C 0.51 15.68 7.89 87.24 0.69 16.37 16 15 O -0.54 -18.18 16.48 -3.28 -0.05 -18.23 16 16 N -0.69 -23.45 5.55 -464.50 -2.58 -26.03 16 17 C 0.14 5.50 5.61 86.38 0.48 5.98 16 18 C 0.02 0.85 5.09 29.85 0.15 1.00 16 19 C -0.54 -29.49 9.11 25.60 0.23 -29.25 16 20 H 0.07 3.42 7.74 -2.91 -0.02 3.40 16 21 C 0.01 0.34 5.46 84.65 0.46 0.80 16 22 N -0.93 -54.40 13.29 21.45 0.28 -54.11 16 23 Si 0.97 42.80 29.54 68.60 2.03 44.82 16 24 H -0.27 -11.75 7.11 99.48 0.71 -11.05 16 25 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 26 H -0.26 -11.10 7.11 99.48 0.71 -10.39 16 27 C -0.14 -1.50 9.94 22.36 0.22 -1.28 16 28 C -0.05 -0.46 9.53 22.50 0.21 -0.25 16 29 H 0.12 0.20 8.06 -2.92 -0.02 0.18 16 30 H 0.10 0.52 7.84 -2.91 -0.02 0.50 16 31 H 0.13 0.26 8.06 -2.91 -0.02 0.24 16 32 H 0.06 0.83 7.79 -2.39 -0.02 0.81 16 33 H 0.07 0.89 8.14 -2.38 -0.02 0.87 16 34 H 0.42 1.66 6.48 -92.71 -0.60 1.06 16 35 H 0.13 3.01 7.64 -2.91 -0.02 2.99 16 36 H 0.12 3.25 6.43 -2.91 -0.02 3.23 16 37 H 0.44 6.51 8.29 -92.71 -0.77 5.74 16 38 H 0.42 13.74 7.94 -92.71 -0.74 13.01 16 39 H 0.07 2.61 8.14 -2.39 -0.02 2.59 16 40 H 0.06 2.58 8.14 -2.39 -0.02 2.56 16 41 H 0.01 0.38 8.14 -2.39 -0.02 0.36 16 42 H 0.01 0.41 8.14 -2.38 -0.02 0.39 16 43 H 0.27 14.65 8.31 -92.71 -0.77 13.88 16 44 H 0.17 0.73 8.06 -2.91 -0.02 0.71 16 45 H 0.17 0.15 6.39 -2.91 -0.02 0.13 16 Total: -1.00 -74.17 395.64 0.39 -73.78 By element: Atomic # 1 Polarization: 20.62 SS G_CDS: -1.05 Total: 19.58 kcal Atomic # 6 Polarization: 11.15 SS G_CDS: 6.07 Total: 17.22 kcal Atomic # 7 Polarization: -98.04 SS G_CDS: -6.49 Total: -104.54 kcal Atomic # 8 Polarization: -50.70 SS G_CDS: -0.17 Total: -50.87 kcal Atomic # 14 Polarization: 42.80 SS G_CDS: 2.03 Total: 44.82 kcal Total: -74.17 0.39 -73.78 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273097261.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.850 kcal (2) G-P(sol) polarization free energy of solvation -74.171 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.022 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.388 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.784 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.634 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds