Wall clock time and date at job start Wed Apr 1 2020 03:40:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53003 * 109.47317 * 2 1 4 4 H 1.08994 * 109.46985 * 304.99896 * 3 2 1 5 5 C 1.50699 * 109.47154 * 184.99615 * 3 2 1 6 6 H 1.07999 * 120.00223 * 239.99614 * 5 3 2 7 7 C 1.37878 * 119.99932 * 60.00331 * 5 3 2 8 8 N 1.31519 * 119.99599 * 359.97438 * 7 5 3 9 9 Si 1.86793 * 120.00197 * 179.97438 * 7 5 3 10 10 H 1.48494 * 109.47645 * 89.99943 * 9 7 5 11 11 H 1.48506 * 109.47072 * 210.00067 * 9 7 5 12 12 H 1.48500 * 109.47089 * 329.99611 * 9 7 5 13 13 N 1.46505 * 109.46813 * 64.99900 * 3 2 1 14 14 C 1.34774 * 119.99910 * 274.99742 * 13 3 2 15 15 O 1.21557 * 120.00100 * 0.02562 * 14 13 3 16 16 C 1.47849 * 119.99953 * 180.02562 * 14 13 3 17 17 C 1.39596 * 120.14480 * 0.02562 * 16 14 13 18 18 C 1.37926 * 119.85459 * 179.97438 * 17 16 14 19 19 C 1.38380 * 120.14475 * 0.02938 * 18 17 16 20 20 C 1.38341 * 120.29450 * 359.95031 * 19 18 17 21 21 C 1.50695 * 119.92740 * 180.02562 * 20 19 18 22 22 N 1.46496 * 109.47297 * 90.00053 * 21 20 19 23 23 C 1.34769 * 124.18050 * 270.01579 * 22 21 20 24 24 O 1.21237 * 127.15360 * 359.93608 * 23 22 21 25 25 C 1.51581 * 105.69000 * 179.97438 * 23 22 21 26 26 N 1.47314 * 103.59231 * 359.97438 * 25 23 22 27 27 C 1.33790 * 124.17876 * 89.97051 * 22 21 20 28 28 O 1.21539 * 123.77025 * 0.04137 * 27 22 21 29 29 C 1.37982 * 120.14092 * 0.29691 * 20 19 18 30 30 H 1.09003 * 109.47003 * 60.00099 * 1 2 3 31 31 H 1.09001 * 109.47215 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.47111 * 299.99872 * 1 2 3 33 33 H 1.09000 * 109.47681 * 239.99379 * 2 1 3 34 34 H 1.09003 * 109.47003 * 119.99901 * 2 1 3 35 35 H 0.97007 * 119.99888 * 179.97438 * 8 7 5 36 36 H 0.96994 * 119.99856 * 95.00487 * 13 3 2 37 37 H 1.08008 * 120.07344 * 359.97438 * 17 16 14 38 38 H 1.07998 * 119.93020 * 179.97438 * 18 17 16 39 39 H 1.08004 * 119.85426 * 179.97438 * 19 18 17 40 40 H 1.09001 * 109.47145 * 329.99913 * 21 20 19 41 41 H 1.09008 * 109.46770 * 209.99833 * 21 20 19 42 42 H 1.08999 * 110.59467 * 241.47353 * 25 23 22 43 43 H 1.08999 * 110.60131 * 118.52310 * 25 23 22 44 44 H 0.96998 * 126.69173 * 180.26359 * 26 25 23 45 45 H 1.07997 * 120.06765 * 179.72531 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5419 1.4443 -0.1237 6 1 4.1472 1.8889 0.6524 7 6 4.1433 0.8784 -1.2279 8 7 3.4062 0.3366 -2.1728 9 14 6.0049 0.8811 -1.3817 10 1 6.5549 -0.3502 -0.7601 11 1 6.3829 0.9223 -2.8172 12 1 6.5569 2.0737 -0.6901 13 7 1.6524 2.0975 1.2519 14 6 0.4351 2.6644 1.3669 15 8 -0.3413 2.6319 0.4322 16 6 0.0442 3.3259 2.6301 17 6 0.9336 3.3654 3.7052 18 6 0.5629 3.9845 4.8807 19 6 -0.6879 4.5651 4.9958 20 6 -1.5740 4.5299 3.9340 21 6 -2.9339 5.1653 4.0682 22 7 -2.8624 6.5659 3.6445 23 6 -2.5803 7.5931 4.4700 24 8 -2.3477 7.5348 5.6585 25 6 -2.6152 8.8366 3.6039 26 7 -2.9432 8.3168 2.2650 27 6 -3.0683 6.9831 2.3901 28 8 -3.3381 6.2403 1.4668 29 6 -1.2175 3.9092 2.7543 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.8934 -0.5139 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 3.8292 -0.0612 -2.9498 36 1 2.2719 2.1231 1.9978 37 1 1.9100 2.9122 3.6169 38 1 1.2499 4.0155 5.7134 39 1 -0.9735 5.0483 5.9185 40 1 -3.2568 5.1163 5.1081 41 1 -3.6477 4.6318 3.4404 42 1 -1.6415 9.3264 3.5967 43 1 -3.3884 9.5229 3.9491 44 1 -3.0453 8.8347 1.4513 45 1 -1.9118 3.8785 1.9277 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273823505.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:40:35 Heat of formation + Delta-G solvation = -51.920964 kcal Electronic energy + Delta-G solvation = -29993.179962 eV Core-core repulsion = 25783.560104 eV Total energy + Delta-G solvation = -4209.619858 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.61321 -39.84300 -38.85462 -38.20629 -36.35372 -35.31289 -35.02308 -32.60819 -31.75845 -31.17827 -30.42088 -28.20138 -27.15197 -26.65269 -23.98148 -23.17081 -22.66266 -22.21808 -20.86723 -20.07058 -19.26545 -18.38398 -17.88925 -17.30763 -16.88559 -16.33790 -15.86578 -15.78061 -15.56797 -15.40232 -14.89302 -14.64629 -14.47334 -14.45811 -14.35706 -14.13942 -13.77027 -13.32362 -12.98267 -12.70831 -12.64269 -12.48461 -11.87799 -11.72193 -11.49132 -11.27527 -11.25343 -11.17151 -10.98501 -10.81359 -10.56915 -10.31170 -10.16680 -10.09859 -9.84382 -9.61672 -9.08026 -9.01544 -8.95763 -8.85886 -8.49533 -7.80510 -6.11715 -4.21285 0.92151 1.23388 1.29930 2.00727 2.72817 2.80155 3.24251 3.30700 3.31698 3.33471 3.64262 4.03139 4.18363 4.35135 4.39467 4.51222 4.56831 4.68602 4.92704 4.95819 5.11858 5.19336 5.21566 5.28511 5.35497 5.42923 5.60676 5.83114 5.98446 6.36169 6.39267 6.42500 6.43877 6.45511 6.49656 6.69551 6.73615 6.86320 7.01229 7.07482 7.23173 7.38844 7.46006 7.63144 7.74787 7.83700 7.91449 8.19109 8.66456 8.78128 9.12804 9.45923 10.93615 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.016262 B = 0.002521 C = 0.002485 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1721.389604 B =11103.111144 C =11267.114548 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.127 4.127 3 C 0.270 3.730 4 H 0.050 0.950 5 C -0.535 4.535 6 H 0.061 0.939 7 C 0.067 3.933 8 N -0.881 5.881 9 Si 0.901 3.099 10 H -0.279 1.279 11 H -0.285 1.285 12 H -0.274 1.274 13 N -0.701 5.701 14 C 0.540 3.460 15 O -0.540 6.540 16 C -0.124 4.124 17 C -0.078 4.078 18 C -0.132 4.132 19 C -0.082 4.082 20 C -0.137 4.137 21 C 0.164 3.836 22 N -0.572 5.572 23 C 0.521 3.479 24 O -0.470 6.470 25 C 0.062 3.938 26 N -0.731 5.731 27 C 0.697 3.303 28 O -0.528 6.528 29 C -0.038 4.038 30 H 0.050 0.950 31 H 0.023 0.977 32 H 0.038 0.962 33 H 0.100 0.900 34 H 0.031 0.969 35 H 0.265 0.735 36 H 0.387 0.613 37 H 0.130 0.870 38 H 0.128 0.872 39 H 0.126 0.874 40 H 0.105 0.895 41 H 0.107 0.893 42 H 0.123 0.877 43 H 0.123 0.877 44 H 0.442 0.558 45 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.601 15.651 15.989 25.203 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.166 4.166 3 C 0.169 3.831 4 H 0.068 0.932 5 C -0.573 4.573 6 H 0.079 0.921 7 C -0.137 4.137 8 N -0.519 5.519 9 Si 0.729 3.271 10 H -0.205 1.205 11 H -0.211 1.211 12 H -0.199 1.199 13 N -0.349 5.349 14 C 0.325 3.675 15 O -0.419 6.419 16 C -0.127 4.127 17 C -0.097 4.097 18 C -0.150 4.150 19 C -0.101 4.101 20 C -0.138 4.138 21 C 0.044 3.956 22 N -0.318 5.318 23 C 0.309 3.691 24 O -0.340 6.340 25 C -0.066 4.066 26 N -0.397 5.397 27 C 0.398 3.602 28 O -0.399 6.399 29 C -0.057 4.057 30 H 0.069 0.931 31 H 0.042 0.958 32 H 0.057 0.943 33 H 0.118 0.882 34 H 0.050 0.950 35 H 0.075 0.925 36 H 0.220 0.780 37 H 0.148 0.852 38 H 0.146 0.854 39 H 0.144 0.856 40 H 0.123 0.877 41 H 0.126 0.874 42 H 0.141 0.859 43 H 0.141 0.859 44 H 0.286 0.714 45 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -12.152 14.965 15.286 24.603 hybrid contribution 1.427 0.236 -0.065 1.447 sum -10.725 15.201 15.221 24.037 Atomic orbital electron populations 1.21844 0.98300 0.98071 1.01304 1.21934 0.92667 0.99697 1.02285 1.18820 0.94228 0.89231 0.80856 0.93172 1.21220 0.90662 1.39087 1.06335 0.92131 1.24885 0.98601 0.94813 0.95364 1.69901 1.35111 1.37520 1.09331 0.86455 0.84879 0.78418 0.77389 1.20544 1.21065 1.19882 1.46455 1.14334 1.55558 1.18586 1.18142 0.83085 0.79464 0.86822 1.90761 1.51439 1.59876 1.39839 1.20386 0.95361 1.01598 0.95359 1.21504 0.99061 0.96637 0.92449 1.21059 0.96658 0.99390 0.97903 1.21228 0.93399 0.97373 0.98108 1.19865 0.96559 1.02296 0.95036 1.20534 0.95395 0.77120 1.02549 1.46489 1.65159 1.09885 1.10276 1.20918 0.74852 0.86144 0.87234 1.90813 1.45155 1.85491 1.12578 1.22459 1.05481 0.96251 0.82362 1.45433 1.76095 1.06686 1.11458 1.15941 0.78186 0.83375 0.82741 1.91092 1.51735 1.57091 1.40009 1.21297 0.95377 0.92422 0.96614 0.93095 0.95820 0.94283 0.88234 0.95041 0.92545 0.78001 0.85211 0.85413 0.85559 0.87721 0.87430 0.85936 0.85934 0.71363 0.84127 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.17 8.51 37.15 0.32 -2.86 16 2 C -0.13 -3.14 5.45 -26.73 -0.15 -3.29 16 3 C 0.27 6.90 2.24 -69.08 -0.15 6.74 16 4 H 0.05 1.49 7.58 -51.93 -0.39 1.09 16 5 C -0.53 -14.18 8.73 -34.44 -0.30 -14.48 16 6 H 0.06 1.53 7.74 -52.49 -0.41 1.13 16 7 C 0.07 1.79 5.29 -17.82 -0.09 1.70 16 8 N -0.88 -24.82 11.29 55.43 0.63 -24.20 16 9 Si 0.90 20.65 29.54 -169.99 -5.02 15.63 16 10 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 11 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 12 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 13 N -0.70 -14.95 4.97 -55.88 -0.28 -15.23 16 14 C 0.54 11.34 6.34 -12.33 -0.08 11.26 16 15 O -0.54 -13.23 13.48 5.32 0.07 -13.16 16 16 C -0.12 -2.08 5.87 -104.97 -0.62 -2.69 16 17 C -0.08 -1.06 9.54 -39.19 -0.37 -1.43 16 18 C -0.13 -1.50 10.03 -39.64 -0.40 -1.89 16 19 C -0.08 -0.91 9.69 -39.49 -0.38 -1.30 16 20 C -0.14 -1.67 5.46 -104.68 -0.57 -2.24 16 21 C 0.16 1.63 5.82 -5.20 -0.03 1.60 16 22 N -0.57 -5.62 2.59 -122.02 -0.32 -5.94 16 23 C 0.52 4.33 8.32 -10.56 -0.09 4.24 16 24 O -0.47 -4.93 17.76 5.59 0.10 -4.83 16 25 C 0.06 0.27 7.97 -4.32 -0.03 0.23 16 26 N -0.73 -4.75 6.58 -65.73 -0.43 -5.18 16 27 C 0.70 7.66 8.62 -88.01 -0.76 6.90 16 28 O -0.53 -8.12 17.48 5.33 0.09 -8.02 16 29 C -0.04 -0.59 9.24 -39.18 -0.36 -0.95 16 30 H 0.05 1.25 7.84 -51.93 -0.41 0.84 16 31 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.04 0.88 5.64 -51.93 -0.29 0.59 16 33 H 0.10 2.71 5.95 -51.93 -0.31 2.40 16 34 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 36 H 0.39 7.14 6.57 -40.82 -0.27 6.87 16 37 H 0.13 1.60 6.41 -52.48 -0.34 1.26 16 38 H 0.13 1.11 8.06 -52.49 -0.42 0.69 16 39 H 0.13 1.19 8.06 -52.48 -0.42 0.77 16 40 H 0.10 0.82 7.95 -51.93 -0.41 0.41 16 41 H 0.11 1.06 7.80 -51.92 -0.41 0.66 16 42 H 0.12 0.32 8.14 -51.93 -0.42 -0.11 16 43 H 0.12 0.19 8.14 -51.93 -0.42 -0.24 16 44 H 0.44 1.94 8.96 -40.82 -0.37 1.57 16 45 H 0.14 2.45 7.65 -52.49 -0.40 2.05 16 LS Contribution 379.24 15.07 5.72 5.72 Total: -1.00 -35.23 379.24 -9.19 -44.42 By element: Atomic # 1 Polarization: 14.91 SS G_CDS: -5.67 Total: 9.24 kcal Atomic # 6 Polarization: 5.63 SS G_CDS: -4.07 Total: 1.55 kcal Atomic # 7 Polarization: -50.14 SS G_CDS: -0.40 Total: -50.54 kcal Atomic # 8 Polarization: -26.27 SS G_CDS: 0.26 Total: -26.01 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -5.02 Total: 15.63 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -35.23 -9.19 -44.42 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273823505.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.505 kcal (2) G-P(sol) polarization free energy of solvation -35.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.736 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.185 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.416 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.921 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds