Wall clock time and date at job start Wed Apr 1 2020 03:40:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53003 * 109.47317 * 2 1 4 4 H 1.08994 * 109.46985 * 304.99896 * 3 2 1 5 5 C 1.50699 * 109.47154 * 184.99615 * 3 2 1 6 6 H 1.07999 * 120.00223 * 239.99614 * 5 3 2 7 7 C 1.37878 * 119.99932 * 60.00331 * 5 3 2 8 8 N 1.31519 * 119.99599 * 359.97438 * 7 5 3 9 9 Si 1.86793 * 120.00197 * 179.97438 * 7 5 3 10 10 H 1.48494 * 109.47645 * 89.99943 * 9 7 5 11 11 H 1.48506 * 109.47072 * 210.00067 * 9 7 5 12 12 H 1.48500 * 109.47089 * 329.99611 * 9 7 5 13 13 N 1.46505 * 109.46813 * 64.99900 * 3 2 1 14 14 C 1.34774 * 119.99910 * 274.99742 * 13 3 2 15 15 O 1.21557 * 120.00100 * 0.02562 * 14 13 3 16 16 C 1.47849 * 119.99953 * 180.02562 * 14 13 3 17 17 C 1.39596 * 120.14480 * 0.02562 * 16 14 13 18 18 C 1.37926 * 119.85459 * 179.97438 * 17 16 14 19 19 C 1.38380 * 120.14475 * 0.02938 * 18 17 16 20 20 C 1.38341 * 120.29450 * 359.95031 * 19 18 17 21 21 C 1.50695 * 119.92740 * 180.02562 * 20 19 18 22 22 N 1.46496 * 109.47297 * 90.00053 * 21 20 19 23 23 C 1.34769 * 124.18050 * 270.01579 * 22 21 20 24 24 O 1.21237 * 127.15360 * 359.93608 * 23 22 21 25 25 C 1.51581 * 105.69000 * 179.97438 * 23 22 21 26 26 N 1.47314 * 103.59231 * 359.97438 * 25 23 22 27 27 C 1.33790 * 124.17876 * 89.97051 * 22 21 20 28 28 O 1.21539 * 123.77025 * 0.04137 * 27 22 21 29 29 C 1.37982 * 120.14092 * 0.29691 * 20 19 18 30 30 H 1.09003 * 109.47003 * 60.00099 * 1 2 3 31 31 H 1.09001 * 109.47215 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.47111 * 299.99872 * 1 2 3 33 33 H 1.09000 * 109.47681 * 239.99379 * 2 1 3 34 34 H 1.09003 * 109.47003 * 119.99901 * 2 1 3 35 35 H 0.97007 * 119.99888 * 179.97438 * 8 7 5 36 36 H 0.96994 * 119.99856 * 95.00487 * 13 3 2 37 37 H 1.08008 * 120.07344 * 359.97438 * 17 16 14 38 38 H 1.07998 * 119.93020 * 179.97438 * 18 17 16 39 39 H 1.08004 * 119.85426 * 179.97438 * 19 18 17 40 40 H 1.09001 * 109.47145 * 329.99913 * 21 20 19 41 41 H 1.09008 * 109.46770 * 209.99833 * 21 20 19 42 42 H 1.08999 * 110.59467 * 241.47353 * 25 23 22 43 43 H 1.08999 * 110.60131 * 118.52310 * 25 23 22 44 44 H 0.96998 * 126.69173 * 180.26359 * 26 25 23 45 45 H 1.07997 * 120.06765 * 179.72531 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5419 1.4443 -0.1237 6 1 4.1472 1.8889 0.6524 7 6 4.1433 0.8784 -1.2279 8 7 3.4062 0.3366 -2.1728 9 14 6.0049 0.8811 -1.3817 10 1 6.5549 -0.3502 -0.7601 11 1 6.3829 0.9223 -2.8172 12 1 6.5569 2.0737 -0.6901 13 7 1.6524 2.0975 1.2519 14 6 0.4351 2.6644 1.3669 15 8 -0.3413 2.6319 0.4322 16 6 0.0442 3.3259 2.6301 17 6 0.9336 3.3654 3.7052 18 6 0.5629 3.9845 4.8807 19 6 -0.6879 4.5651 4.9958 20 6 -1.5740 4.5299 3.9340 21 6 -2.9339 5.1653 4.0682 22 7 -2.8624 6.5659 3.6445 23 6 -2.5803 7.5931 4.4700 24 8 -2.3477 7.5348 5.6585 25 6 -2.6152 8.8366 3.6039 26 7 -2.9432 8.3168 2.2650 27 6 -3.0683 6.9831 2.3901 28 8 -3.3381 6.2403 1.4668 29 6 -1.2175 3.9092 2.7543 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.8934 -0.5139 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 3.8292 -0.0612 -2.9498 36 1 2.2719 2.1231 1.9978 37 1 1.9100 2.9122 3.6169 38 1 1.2499 4.0155 5.7134 39 1 -0.9735 5.0483 5.9185 40 1 -3.2568 5.1163 5.1081 41 1 -3.6477 4.6318 3.4404 42 1 -1.6415 9.3264 3.5967 43 1 -3.3884 9.5229 3.9491 44 1 -3.0453 8.8347 1.4513 45 1 -1.9118 3.8785 1.9277 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273823505.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:40:34 Heat of formation + Delta-G solvation = -77.838666 kcal Electronic energy + Delta-G solvation = -29994.303838 eV Core-core repulsion = 25783.560104 eV Total energy + Delta-G solvation = -4210.743734 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -43.32304 -41.24126 -39.66215 -39.55958 -37.17741 -36.96800 -36.07545 -34.41314 -33.27485 -32.36755 -31.88127 -29.08070 -28.72715 -27.60501 -25.55411 -24.50575 -23.79488 -23.19872 -22.03985 -21.51834 -20.94210 -19.36315 -18.98364 -18.22715 -17.86159 -17.59095 -17.37733 -16.93405 -16.59021 -16.38117 -16.30416 -16.22141 -15.76060 -15.55674 -15.26377 -14.99186 -14.75378 -14.61333 -14.59302 -14.11603 -13.91996 -13.57125 -13.34594 -13.28485 -13.20367 -12.92215 -12.73734 -12.65714 -12.28216 -12.18490 -12.14444 -12.08703 -11.63190 -11.32739 -11.08824 -10.98974 -10.77950 -10.54948 -10.41198 -10.03819 -9.97525 -9.64598 -8.17559 -6.35716 -0.17802 0.18331 0.64125 1.26841 1.43943 1.44936 1.55429 1.93002 1.97892 2.32082 2.32813 2.56508 2.86728 3.08152 3.11857 3.58213 3.66926 3.82896 3.97371 4.11063 4.23731 4.28228 4.33129 4.40518 4.44939 4.51458 4.52914 4.57272 4.67199 4.73381 4.81127 4.94828 5.02817 5.20482 5.33363 5.34349 5.39993 5.40621 5.52323 5.58116 5.74983 5.83362 5.84576 5.91467 6.04065 6.13252 6.39113 6.71269 6.91919 7.10303 7.30345 7.50387 8.88144 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.016262 B = 0.002521 C = 0.002485 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1721.389604 B =11103.111144 C =11267.114548 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.119 4.119 3 C 0.278 3.722 4 H -0.004 1.004 5 C -0.549 4.549 6 H 0.073 0.927 7 C 0.015 3.985 8 N -0.915 5.915 9 Si 0.973 3.027 10 H -0.270 1.270 11 H -0.287 1.287 12 H -0.264 1.264 13 N -0.697 5.697 14 C 0.536 3.464 15 O -0.587 6.587 16 C -0.150 4.150 17 C -0.077 4.077 18 C -0.119 4.119 19 C -0.067 4.067 20 C -0.130 4.130 21 C 0.161 3.839 22 N -0.576 5.576 23 C 0.518 3.482 24 O -0.490 6.490 25 C 0.071 3.929 26 N -0.714 5.714 27 C 0.688 3.312 28 O -0.586 6.586 29 C -0.053 4.053 30 H 0.023 0.977 31 H 0.048 0.952 32 H 0.039 0.961 33 H 0.074 0.926 34 H 0.043 0.957 35 H 0.265 0.735 36 H 0.402 0.598 37 H 0.143 0.857 38 H 0.167 0.833 39 H 0.156 0.844 40 H 0.132 0.868 41 H 0.097 0.903 42 H 0.152 0.848 43 H 0.163 0.837 44 H 0.452 0.548 45 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.302 17.724 19.747 28.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.158 4.158 3 C 0.175 3.825 4 H 0.014 0.986 5 C -0.587 4.587 6 H 0.091 0.909 7 C -0.185 4.185 8 N -0.554 5.554 9 Si 0.798 3.202 10 H -0.195 1.195 11 H -0.213 1.213 12 H -0.188 1.188 13 N -0.346 5.346 14 C 0.324 3.676 15 O -0.469 6.469 16 C -0.153 4.153 17 C -0.096 4.096 18 C -0.136 4.136 19 C -0.085 4.085 20 C -0.131 4.131 21 C 0.041 3.959 22 N -0.322 5.322 23 C 0.308 3.692 24 O -0.362 6.362 25 C -0.055 4.055 26 N -0.380 5.380 27 C 0.389 3.611 28 O -0.462 6.462 29 C -0.073 4.073 30 H 0.043 0.957 31 H 0.067 0.933 32 H 0.058 0.942 33 H 0.093 0.907 34 H 0.062 0.938 35 H 0.075 0.925 36 H 0.239 0.761 37 H 0.161 0.839 38 H 0.185 0.815 39 H 0.173 0.827 40 H 0.150 0.850 41 H 0.115 0.885 42 H 0.169 0.831 43 H 0.180 0.820 44 H 0.298 0.702 45 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -10.838 17.103 19.105 27.838 hybrid contribution 0.935 -0.306 -1.156 1.518 sum -9.903 16.797 17.949 26.502 Atomic orbital electron populations 1.21678 0.97247 0.99157 1.00026 1.21781 0.93503 0.99070 1.01483 1.18416 0.93914 0.89174 0.81010 0.98639 1.21553 0.91102 1.39165 1.06908 0.90894 1.25811 1.03561 0.94270 0.94897 1.70062 1.37187 1.38231 1.09878 0.85327 0.78771 0.78960 0.77168 1.19490 1.21284 1.18806 1.46182 1.15058 1.55580 1.17752 1.18835 0.82169 0.78616 0.87949 1.90729 1.52650 1.61553 1.42008 1.20049 0.96941 1.03896 0.94432 1.21656 0.98892 0.96815 0.92227 1.21471 0.97151 0.97303 0.97702 1.21587 0.92762 0.95888 0.98271 1.20035 0.97841 1.01245 0.93964 1.20582 0.93966 0.77516 1.03861 1.46529 1.65178 1.10154 1.10292 1.21512 0.73844 0.86734 0.87139 1.90805 1.46138 1.85859 1.13372 1.22773 1.08335 0.94645 0.79764 1.45450 1.74342 1.05088 1.13084 1.16222 0.78004 0.84451 0.82465 1.91060 1.54551 1.58829 1.41763 1.21115 0.94701 0.94147 0.97296 0.95744 0.93336 0.94207 0.90737 0.93827 0.92541 0.76149 0.83949 0.81514 0.82674 0.85009 0.88453 0.83069 0.81967 0.70160 0.87465 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.96 8.51 71.98 0.61 -5.35 16 2 C -0.12 -6.13 5.45 30.59 0.17 -5.97 16 3 C 0.28 14.87 2.24 44.24 0.10 14.97 16 4 H 0.00 -0.27 7.58 -2.39 -0.02 -0.29 16 5 C -0.55 -29.61 8.73 25.60 0.22 -29.38 16 6 H 0.07 3.65 7.74 -2.91 -0.02 3.63 16 7 C 0.01 0.80 5.29 84.65 0.45 1.25 16 8 N -0.92 -53.30 11.29 21.45 0.24 -53.06 16 9 Si 0.97 42.38 29.54 68.60 2.03 44.41 16 10 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 11 H -0.29 -12.51 7.11 99.48 0.71 -11.80 16 12 H -0.26 -10.97 7.11 99.48 0.71 -10.26 16 13 N -0.70 -30.73 4.97 -448.97 -2.23 -32.97 16 14 C 0.54 23.84 6.34 86.79 0.55 24.39 16 15 O -0.59 -31.24 13.48 -3.90 -0.05 -31.30 16 16 C -0.15 -5.17 5.87 -20.09 -0.12 -5.29 16 17 C -0.08 -1.97 9.54 22.52 0.21 -1.75 16 18 C -0.12 -2.23 10.03 22.23 0.22 -2.01 16 19 C -0.07 -1.25 9.69 22.33 0.22 -1.03 16 20 C -0.13 -3.06 5.46 -19.90 -0.11 -3.17 16 21 C 0.16 3.10 5.82 85.63 0.50 3.59 16 22 N -0.58 -10.68 2.59 -777.21 -2.01 -12.69 16 23 C 0.52 7.13 8.32 87.94 0.73 7.86 16 24 O -0.49 -8.64 17.76 -2.90 -0.05 -8.69 16 25 C 0.07 0.34 7.97 85.76 0.68 1.03 16 26 N -0.71 -8.00 6.58 -480.30 -3.16 -11.17 16 27 C 0.69 15.12 8.62 179.44 1.55 16.67 16 28 O -0.59 -19.31 17.48 -3.84 -0.07 -19.38 16 29 C -0.05 -1.72 9.24 22.53 0.21 -1.51 16 30 H 0.02 1.26 7.84 -2.39 -0.02 1.24 16 31 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 32 H 0.04 1.88 5.64 -2.39 -0.01 1.87 16 33 H 0.07 4.23 5.95 -2.39 -0.01 4.22 16 34 H 0.04 2.09 8.14 -2.39 -0.02 2.07 16 35 H 0.27 14.61 8.31 -92.70 -0.77 13.84 16 36 H 0.40 14.87 6.57 -92.71 -0.61 14.26 16 37 H 0.14 3.19 6.41 -2.91 -0.02 3.17 16 38 H 0.17 1.92 8.06 -2.91 -0.02 1.90 16 39 H 0.16 2.13 8.06 -2.91 -0.02 2.11 16 40 H 0.13 1.77 7.95 -2.39 -0.02 1.75 16 41 H 0.10 2.05 7.80 -2.38 -0.02 2.04 16 42 H 0.15 0.06 8.14 -2.39 -0.02 0.04 16 43 H 0.16 -0.33 8.14 -2.39 -0.02 -0.35 16 44 H 0.45 3.24 8.96 -92.71 -0.83 2.41 16 45 H 0.11 4.19 7.65 -2.91 -0.02 4.16 16 Total: -1.00 -83.59 379.24 0.51 -83.08 By element: Atomic # 1 Polarization: 27.84 SS G_CDS: -0.38 Total: 27.46 kcal Atomic # 6 Polarization: 8.10 SS G_CDS: 6.20 Total: 14.30 kcal Atomic # 7 Polarization: -102.72 SS G_CDS: -7.16 Total: -109.88 kcal Atomic # 8 Polarization: -59.20 SS G_CDS: -0.17 Total: -59.37 kcal Atomic # 14 Polarization: 42.38 SS G_CDS: 2.03 Total: 44.41 kcal Total: -83.59 0.51 -83.08 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273823505.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.243 kcal (2) G-P(sol) polarization free energy of solvation -83.590 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.348 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.509 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.081 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.839 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds