Wall clock time and date at job start Wed Apr 1 2020 03:40:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52995 * 109.47413 * 2 1 4 4 H 1.09005 * 109.47189 * 54.99719 * 3 2 1 5 5 C 1.50694 * 109.47453 * 175.00107 * 3 2 1 6 6 H 1.08001 * 120.00329 * 119.99598 * 5 3 2 7 7 C 1.37879 * 119.99654 * 300.00211 * 5 3 2 8 8 N 1.31508 * 120.00407 * 359.97438 * 7 5 3 9 9 Si 1.86801 * 119.99962 * 179.97438 * 7 5 3 10 10 H 1.48506 * 109.47059 * 59.99975 * 9 7 5 11 11 H 1.48496 * 109.47534 * 179.97438 * 9 7 5 12 12 H 1.48504 * 109.47329 * 300.00055 * 9 7 5 13 13 N 1.46506 * 109.47182 * 295.00131 * 3 2 1 14 14 C 1.34773 * 119.99969 * 84.72073 * 13 3 2 15 15 O 1.21550 * 120.00098 * 0.02562 * 14 13 3 16 16 C 1.47846 * 120.00039 * 179.97438 * 14 13 3 17 17 C 1.39599 * 120.14083 * 359.73142 * 16 14 13 18 18 C 1.37944 * 119.85210 * 179.78688 * 17 16 14 19 19 C 1.38378 * 120.14082 * 0.48590 * 18 17 16 20 20 C 1.38340 * 120.29791 * 359.74346 * 19 18 17 21 21 C 1.50694 * 119.92939 * 180.02562 * 20 19 18 22 22 C 1.53000 * 110.53869 * 120.72214 * 21 20 19 23 23 N 1.47305 * 110.60030 * 357.89037 * 21 20 19 24 24 C 1.34534 * 106.61855 * 241.47750 * 23 21 20 25 25 O 1.21540 * 123.76857 * 180.02562 * 24 23 21 26 26 N 1.33788 * 112.45667 * 359.97438 * 24 23 21 27 27 C 1.35114 * 111.68870 * 359.90856 * 26 24 23 28 28 O 1.21235 * 127.33653 * 180.09283 * 27 26 24 29 29 C 1.37977 * 120.14180 * 0.02562 * 20 19 18 30 30 H 1.08996 * 109.47406 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.46810 * 300.00543 * 1 2 3 32 32 H 1.09007 * 109.47086 * 59.99509 * 1 2 3 33 33 H 1.08998 * 109.47116 * 239.99782 * 2 1 3 34 34 H 1.08996 * 109.46851 * 119.99791 * 2 1 3 35 35 H 0.97000 * 120.00744 * 180.02562 * 8 7 5 36 36 H 0.97005 * 119.99811 * 265.00126 * 13 3 2 37 37 H 1.07993 * 120.07729 * 359.97438 * 17 16 14 38 38 H 1.07989 * 119.92704 * 180.20789 * 18 17 16 39 39 H 1.08002 * 119.85429 * 179.76573 * 19 18 17 40 40 H 1.09006 * 109.47292 * 59.99526 * 22 21 20 41 41 H 1.08997 * 109.47679 * 179.97438 * 22 21 20 42 42 H 1.09000 * 109.46882 * 300.00165 * 22 21 20 43 43 H 0.97000 * 126.69372 * 61.50800 * 23 21 20 44 44 H 0.97003 * 124.17518 * 180.02562 * 26 24 23 45 45 H 1.08006 * 120.07644 * 179.97438 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5419 1.4442 0.1238 6 1 4.1472 1.8887 -0.6524 7 6 4.1432 0.8783 1.2279 8 7 3.4062 0.3373 2.1733 9 14 6.0050 0.8798 1.3812 10 1 6.5005 2.2798 1.3809 11 1 6.3978 0.2165 2.6503 12 1 6.5967 0.1451 0.2343 13 7 1.6525 2.0975 -1.2518 14 6 0.4332 2.6595 -1.3689 15 8 -0.3448 2.6233 -0.4357 16 6 0.0422 3.3210 -2.6320 17 6 0.9359 3.3701 -3.7033 18 6 0.5633 3.9850 -4.8806 19 6 -0.6894 4.5612 -4.9974 20 6 -1.5780 4.5202 -3.9379 21 6 -2.9403 5.1498 -4.0744 22 6 -4.0380 4.1064 -3.8574 23 7 -3.0861 5.7888 -5.3936 24 6 -3.2906 7.0989 -5.1660 25 8 -3.4522 7.9204 -6.0470 26 7 -3.2971 7.3961 -3.8616 27 6 -3.0976 6.2991 -3.0985 28 8 -3.0523 6.2435 -1.8883 29 6 -1.2196 3.9041 -2.7565 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3634 0.5139 -0.8900 33 1 1.8933 -0.5139 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 3.8292 -0.0605 2.9502 36 1 2.2720 2.1231 -1.9978 37 1 1.9156 2.9251 -3.6117 38 1 1.2524 4.0208 -5.7113 39 1 -0.9748 5.0447 -5.9200 40 1 -3.9431 3.6815 -2.8580 41 1 -5.0146 4.5796 -3.9594 42 1 -3.9383 3.3145 -4.5997 43 1 -3.0435 5.3505 -6.2578 44 1 -3.4305 8.2890 -3.5068 45 1 -1.9140 3.8731 -1.9298 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273870054.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:40:11 Heat of formation + Delta-G solvation = -54.651710 kcal Electronic energy + Delta-G solvation = -30218.637326 eV Core-core repulsion = 26008.899054 eV Total energy + Delta-G solvation = -4209.738272 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.93494 -39.96856 -38.99403 -38.31329 -36.66723 -35.10039 -34.80548 -32.60961 -31.99257 -31.49274 -30.44432 -29.63377 -27.03786 -25.49949 -24.10323 -23.27002 -23.05100 -22.64231 -21.01580 -20.29340 -19.37861 -18.72537 -17.94756 -17.12941 -16.88717 -16.40967 -16.25411 -16.03807 -15.62029 -15.48711 -15.07053 -14.64350 -14.54938 -14.44361 -14.31504 -13.94408 -13.64661 -13.20298 -12.95235 -12.79954 -12.71516 -12.55271 -11.94459 -11.79608 -11.62897 -11.44794 -11.28126 -11.22611 -11.02353 -10.84650 -10.73687 -10.60684 -10.35848 -10.21129 -10.02706 -9.66304 -9.16850 -9.08059 -9.07625 -9.01396 -8.52672 -7.87294 -6.14858 -4.24725 0.77877 1.07288 1.28082 2.02505 2.61759 2.66041 3.11959 3.23575 3.29394 3.30058 3.57362 3.87064 3.98531 4.07727 4.31021 4.35221 4.71629 4.80556 4.84078 5.03876 5.15947 5.16918 5.17545 5.22389 5.39128 5.58745 5.63956 5.67734 5.80641 6.14763 6.20459 6.28329 6.31319 6.37449 6.44079 6.50577 6.63801 6.67049 7.01153 7.01866 7.17703 7.32828 7.39633 7.58660 7.69557 7.73268 7.86834 8.14879 8.59588 8.73414 9.04951 9.42459 10.90432 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.020282 B = 0.002495 C = 0.002415 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1380.222839 B =11220.837835 C =11591.695940 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.127 4.127 3 C 0.270 3.730 4 H 0.051 0.949 5 C -0.536 4.536 6 H 0.060 0.940 7 C 0.068 3.932 8 N -0.881 5.881 9 Si 0.901 3.099 10 H -0.276 1.276 11 H -0.286 1.286 12 H -0.276 1.276 13 N -0.700 5.700 14 C 0.539 3.461 15 O -0.539 6.539 16 C -0.115 4.115 17 C -0.077 4.077 18 C -0.125 4.125 19 C -0.087 4.087 20 C -0.116 4.116 21 C 0.170 3.830 22 C -0.146 4.146 23 N -0.716 5.716 24 C 0.709 3.291 25 O -0.545 6.545 26 N -0.682 5.682 27 C 0.534 3.466 28 O -0.442 6.442 29 C -0.040 4.040 30 H 0.023 0.977 31 H 0.050 0.950 32 H 0.038 0.962 33 H 0.031 0.969 34 H 0.100 0.900 35 H 0.266 0.734 36 H 0.387 0.613 37 H 0.133 0.867 38 H 0.131 0.869 39 H 0.125 0.875 40 H 0.091 0.909 41 H 0.072 0.928 42 H 0.084 0.916 43 H 0.441 0.559 44 H 0.433 0.567 45 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.931 7.733 -17.021 22.178 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.166 4.166 3 C 0.169 3.831 4 H 0.069 0.931 5 C -0.575 4.575 6 H 0.078 0.922 7 C -0.136 4.136 8 N -0.518 5.518 9 Si 0.728 3.272 10 H -0.202 1.202 11 H -0.211 1.211 12 H -0.202 1.202 13 N -0.348 5.348 14 C 0.324 3.676 15 O -0.418 6.418 16 C -0.118 4.118 17 C -0.096 4.096 18 C -0.143 4.143 19 C -0.106 4.106 20 C -0.117 4.117 21 C 0.079 3.921 22 C -0.204 4.204 23 N -0.381 5.381 24 C 0.408 3.592 25 O -0.419 6.419 26 N -0.353 5.353 27 C 0.318 3.682 28 O -0.309 6.309 29 C -0.059 4.059 30 H 0.042 0.958 31 H 0.069 0.931 32 H 0.057 0.943 33 H 0.050 0.950 34 H 0.118 0.882 35 H 0.076 0.924 36 H 0.220 0.780 37 H 0.151 0.849 38 H 0.149 0.851 39 H 0.143 0.857 40 H 0.110 0.890 41 H 0.091 0.909 42 H 0.103 0.897 43 H 0.286 0.714 44 H 0.276 0.724 45 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -12.492 7.912 -15.914 21.724 hybrid contribution 1.386 0.212 -0.532 1.499 sum -11.107 8.124 -16.447 21.444 Atomic orbital electron populations 1.21852 0.98301 0.98083 1.01292 1.21937 0.92665 0.99681 1.02337 1.18831 0.94273 0.89226 0.80772 0.93107 1.21172 0.90619 1.39281 1.06402 0.92156 1.24874 0.98604 0.94752 0.95348 1.69874 1.35260 1.37414 1.09292 0.86519 0.84835 0.78333 0.77477 1.20176 1.21106 1.20159 1.46470 1.14110 1.55548 1.18635 1.18095 0.83184 0.79578 0.86718 1.90762 1.51410 1.59772 1.39852 1.20366 0.94978 1.01016 0.95472 1.21553 0.99196 0.96490 0.92361 1.21058 0.96352 0.98910 0.97989 1.21018 0.93410 0.98158 0.97977 1.19249 0.93636 1.02987 0.95876 1.20099 0.96185 0.93443 0.82384 1.22073 0.95714 0.97456 1.05204 1.45630 1.76623 1.07096 1.08745 1.15790 0.77288 0.83593 0.82489 1.91066 1.54787 1.50620 1.45428 1.44400 1.69246 1.13592 1.08071 1.20715 0.74549 0.84709 0.88248 1.90911 1.44781 1.83991 1.11170 1.21108 0.95785 0.92661 0.96387 0.95820 0.93064 0.94281 0.95017 0.88210 0.92444 0.77956 0.84933 0.85111 0.85668 0.89034 0.90943 0.89726 0.71350 0.72429 0.83778 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.01 8.51 37.16 0.32 -2.70 16 2 C -0.13 -3.02 5.45 -26.73 -0.15 -3.17 16 3 C 0.27 6.64 2.24 -69.08 -0.15 6.48 16 4 H 0.05 1.46 7.59 -51.93 -0.39 1.06 16 5 C -0.54 -13.82 8.73 -34.44 -0.30 -14.12 16 6 H 0.06 1.48 7.74 -52.49 -0.41 1.07 16 7 C 0.07 1.78 5.29 -17.82 -0.09 1.69 16 8 N -0.88 -24.30 11.29 55.43 0.63 -23.67 16 9 Si 0.90 20.26 29.54 -169.99 -5.02 15.24 16 10 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 11 H -0.29 -6.43 7.11 56.52 0.40 -6.02 16 12 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 13 N -0.70 -14.05 4.98 -55.88 -0.28 -14.33 16 14 C 0.54 10.50 6.34 -12.33 -0.08 10.43 16 15 O -0.54 -12.31 13.45 5.32 0.07 -12.24 16 16 C -0.12 -1.72 5.87 -104.97 -0.62 -2.34 16 17 C -0.08 -0.92 9.54 -39.18 -0.37 -1.29 16 18 C -0.13 -1.17 10.03 -39.64 -0.40 -1.57 16 19 C -0.09 -0.77 9.37 -39.49 -0.37 -1.14 16 20 C -0.12 -1.18 4.82 -104.68 -0.50 -1.68 16 21 C 0.17 1.40 1.16 -133.25 -0.16 1.25 16 22 C -0.15 -0.98 8.78 37.16 0.33 -0.66 16 23 N -0.72 -4.75 4.61 -54.03 -0.25 -5.00 16 24 C 0.71 6.42 9.00 -88.02 -0.79 5.63 16 25 O -0.55 -6.65 18.04 5.33 0.10 -6.56 16 26 N -0.68 -5.68 5.71 -15.71 -0.09 -5.77 16 27 C 0.53 5.42 7.35 -10.40 -0.08 5.34 16 28 O -0.44 -5.95 17.41 5.60 0.10 -5.85 16 29 C -0.04 -0.54 8.32 -39.19 -0.33 -0.86 16 30 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 31 H 0.05 1.20 7.84 -51.93 -0.41 0.79 16 32 H 0.04 0.82 5.62 -51.92 -0.29 0.53 16 33 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.10 2.63 5.95 -51.93 -0.31 2.32 16 35 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 36 H 0.39 6.66 6.57 -40.82 -0.27 6.39 16 37 H 0.13 1.42 6.41 -52.49 -0.34 1.08 16 38 H 0.13 0.89 8.06 -52.49 -0.42 0.47 16 39 H 0.13 0.80 6.66 -52.49 -0.35 0.45 16 40 H 0.09 0.72 7.45 -51.93 -0.39 0.33 16 41 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 42 H 0.08 0.45 8.14 -51.93 -0.42 0.02 16 43 H 0.44 1.88 8.49 -40.82 -0.35 1.54 16 44 H 0.43 2.80 8.96 -40.82 -0.37 2.43 16 45 H 0.14 2.13 6.87 -52.48 -0.36 1.77 16 LS Contribution 372.24 15.07 5.61 5.61 Total: -1.00 -33.23 372.24 -8.35 -41.58 By element: Atomic # 1 Polarization: 15.18 SS G_CDS: -5.47 Total: 9.70 kcal Atomic # 6 Polarization: 5.03 SS G_CDS: -3.74 Total: 1.29 kcal Atomic # 7 Polarization: -48.77 SS G_CDS: 0.01 Total: -48.76 kcal Atomic # 8 Polarization: -24.92 SS G_CDS: 0.27 Total: -24.65 kcal Atomic # 14 Polarization: 20.26 SS G_CDS: -5.02 Total: 15.24 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -33.23 -8.35 -41.58 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273870054.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.070 kcal (2) G-P(sol) polarization free energy of solvation -33.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.301 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.351 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.582 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.652 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds