Wall clock time and date at job start Wed Apr 1 2020 03:40:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52995 * 109.47413 * 2 1 4 4 H 1.09005 * 109.47189 * 54.99719 * 3 2 1 5 5 C 1.50694 * 109.47453 * 175.00107 * 3 2 1 6 6 H 1.08001 * 120.00329 * 119.99598 * 5 3 2 7 7 C 1.37879 * 119.99654 * 300.00211 * 5 3 2 8 8 N 1.31508 * 120.00407 * 359.97438 * 7 5 3 9 9 Si 1.86801 * 119.99962 * 179.97438 * 7 5 3 10 10 H 1.48506 * 109.47059 * 59.99975 * 9 7 5 11 11 H 1.48496 * 109.47534 * 179.97438 * 9 7 5 12 12 H 1.48504 * 109.47329 * 300.00055 * 9 7 5 13 13 N 1.46506 * 109.47182 * 295.00131 * 3 2 1 14 14 C 1.34773 * 119.99969 * 84.72073 * 13 3 2 15 15 O 1.21550 * 120.00098 * 0.02562 * 14 13 3 16 16 C 1.47846 * 120.00039 * 179.97438 * 14 13 3 17 17 C 1.39599 * 120.14083 * 359.73142 * 16 14 13 18 18 C 1.37944 * 119.85210 * 179.78688 * 17 16 14 19 19 C 1.38378 * 120.14082 * 0.48590 * 18 17 16 20 20 C 1.38340 * 120.29791 * 359.74346 * 19 18 17 21 21 C 1.50694 * 119.92939 * 180.02562 * 20 19 18 22 22 C 1.53000 * 110.53869 * 120.72214 * 21 20 19 23 23 N 1.47305 * 110.60030 * 357.89037 * 21 20 19 24 24 C 1.34534 * 106.61855 * 241.47750 * 23 21 20 25 25 O 1.21540 * 123.76857 * 180.02562 * 24 23 21 26 26 N 1.33788 * 112.45667 * 359.97438 * 24 23 21 27 27 C 1.35114 * 111.68870 * 359.90856 * 26 24 23 28 28 O 1.21235 * 127.33653 * 180.09283 * 27 26 24 29 29 C 1.37977 * 120.14180 * 0.02562 * 20 19 18 30 30 H 1.08996 * 109.47406 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.46810 * 300.00543 * 1 2 3 32 32 H 1.09007 * 109.47086 * 59.99509 * 1 2 3 33 33 H 1.08998 * 109.47116 * 239.99782 * 2 1 3 34 34 H 1.08996 * 109.46851 * 119.99791 * 2 1 3 35 35 H 0.97000 * 120.00744 * 180.02562 * 8 7 5 36 36 H 0.97005 * 119.99811 * 265.00126 * 13 3 2 37 37 H 1.07993 * 120.07729 * 359.97438 * 17 16 14 38 38 H 1.07989 * 119.92704 * 180.20789 * 18 17 16 39 39 H 1.08002 * 119.85429 * 179.76573 * 19 18 17 40 40 H 1.09006 * 109.47292 * 59.99526 * 22 21 20 41 41 H 1.08997 * 109.47679 * 179.97438 * 22 21 20 42 42 H 1.09000 * 109.46882 * 300.00165 * 22 21 20 43 43 H 0.97000 * 126.69372 * 61.50800 * 23 21 20 44 44 H 0.97003 * 124.17518 * 180.02562 * 26 24 23 45 45 H 1.08006 * 120.07644 * 179.97438 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5419 1.4442 0.1238 6 1 4.1472 1.8887 -0.6524 7 6 4.1432 0.8783 1.2279 8 7 3.4062 0.3373 2.1733 9 14 6.0050 0.8798 1.3812 10 1 6.5005 2.2798 1.3809 11 1 6.3978 0.2165 2.6503 12 1 6.5967 0.1451 0.2343 13 7 1.6525 2.0975 -1.2518 14 6 0.4332 2.6595 -1.3689 15 8 -0.3448 2.6233 -0.4357 16 6 0.0422 3.3210 -2.6320 17 6 0.9359 3.3701 -3.7033 18 6 0.5633 3.9850 -4.8806 19 6 -0.6894 4.5612 -4.9974 20 6 -1.5780 4.5202 -3.9379 21 6 -2.9403 5.1498 -4.0744 22 6 -4.0380 4.1064 -3.8574 23 7 -3.0861 5.7888 -5.3936 24 6 -3.2906 7.0989 -5.1660 25 8 -3.4522 7.9204 -6.0470 26 7 -3.2971 7.3961 -3.8616 27 6 -3.0976 6.2991 -3.0985 28 8 -3.0523 6.2435 -1.8883 29 6 -1.2196 3.9041 -2.7565 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3634 0.5139 -0.8900 33 1 1.8933 -0.5139 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 3.8292 -0.0605 2.9502 36 1 2.2720 2.1231 -1.9978 37 1 1.9156 2.9251 -3.6117 38 1 1.2524 4.0208 -5.7113 39 1 -0.9748 5.0447 -5.9200 40 1 -3.9431 3.6815 -2.8580 41 1 -5.0146 4.5796 -3.9594 42 1 -3.9383 3.3145 -4.5997 43 1 -3.0435 5.3505 -6.2578 44 1 -3.4305 8.2890 -3.5068 45 1 -1.9140 3.8731 -1.9298 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273870054.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:40:11 Heat of formation + Delta-G solvation = -79.811868 kcal Electronic energy + Delta-G solvation = -30219.728352 eV Core-core repulsion = 26008.899054 eV Total energy + Delta-G solvation = -4210.829298 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -43.69357 -41.20381 -39.94325 -39.49526 -37.53671 -36.91604 -35.58898 -34.36078 -33.13929 -32.74457 -31.73704 -30.41484 -28.92098 -26.23059 -25.53664 -24.52606 -23.98424 -23.73468 -22.03085 -21.69363 -20.99022 -19.73015 -19.05483 -18.15161 -17.82632 -17.51628 -17.39033 -16.96001 -16.93136 -16.68311 -16.32895 -16.27105 -15.71670 -15.45894 -15.39225 -14.96871 -14.70384 -14.58030 -14.34794 -14.01493 -13.62611 -13.53258 -13.34372 -13.17501 -13.13736 -12.90937 -12.68139 -12.62899 -12.39463 -12.18360 -12.08639 -12.05415 -11.58571 -11.55657 -11.44270 -11.06591 -10.79880 -10.68974 -10.51900 -10.02792 -9.93661 -9.61426 -8.15731 -6.33470 -0.17678 0.17565 0.46178 1.35123 1.45329 1.47184 1.54848 1.84934 1.89511 2.03590 2.34585 2.57789 2.74736 2.95316 3.13887 3.17851 3.62602 3.81303 3.96312 4.08272 4.15620 4.23018 4.44676 4.49466 4.57609 4.57744 4.65940 4.69841 4.77439 4.94653 4.99297 5.06567 5.10007 5.23588 5.29811 5.34445 5.35419 5.44178 5.55778 5.60441 5.73598 5.76234 5.78698 5.82958 5.93576 6.16609 6.27919 6.73754 6.95522 7.06104 7.32859 7.53796 8.89547 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.020282 B = 0.002495 C = 0.002415 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1380.222839 B =11220.837835 C =11591.695940 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.120 4.120 3 C 0.278 3.722 4 H -0.003 1.003 5 C -0.549 4.549 6 H 0.073 0.927 7 C 0.016 3.984 8 N -0.915 5.915 9 Si 0.970 3.030 10 H -0.272 1.272 11 H -0.287 1.287 12 H -0.262 1.262 13 N -0.697 5.697 14 C 0.536 3.464 15 O -0.584 6.584 16 C -0.143 4.143 17 C -0.077 4.077 18 C -0.113 4.113 19 C -0.069 4.069 20 C -0.112 4.112 21 C 0.178 3.822 22 C -0.146 4.146 23 N -0.692 5.692 24 C 0.713 3.287 25 O -0.572 6.572 26 N -0.673 5.673 27 C 0.532 3.468 28 O -0.483 6.483 29 C -0.051 4.051 30 H 0.047 0.953 31 H 0.024 0.976 32 H 0.043 0.957 33 H 0.043 0.957 34 H 0.072 0.928 35 H 0.265 0.735 36 H 0.403 0.597 37 H 0.143 0.857 38 H 0.170 0.830 39 H 0.161 0.839 40 H 0.074 0.926 41 H 0.085 0.915 42 H 0.106 0.894 43 H 0.456 0.544 44 H 0.440 0.560 45 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.154 8.183 -21.082 25.216 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.159 4.159 3 C 0.175 3.825 4 H 0.015 0.985 5 C -0.588 4.588 6 H 0.091 0.909 7 C -0.184 4.184 8 N -0.553 5.553 9 Si 0.795 3.205 10 H -0.198 1.198 11 H -0.213 1.213 12 H -0.187 1.187 13 N -0.346 5.346 14 C 0.324 3.676 15 O -0.467 6.467 16 C -0.146 4.146 17 C -0.096 4.096 18 C -0.131 4.131 19 C -0.087 4.087 20 C -0.113 4.113 21 C 0.086 3.914 22 C -0.204 4.204 23 N -0.358 5.358 24 C 0.413 3.587 25 O -0.448 6.448 26 N -0.344 5.344 27 C 0.317 3.683 28 O -0.352 6.352 29 C -0.070 4.070 30 H 0.066 0.934 31 H 0.043 0.957 32 H 0.062 0.938 33 H 0.062 0.938 34 H 0.091 0.909 35 H 0.074 0.926 36 H 0.239 0.761 37 H 0.160 0.840 38 H 0.187 0.813 39 H 0.179 0.821 40 H 0.093 0.907 41 H 0.104 0.896 42 H 0.124 0.876 43 H 0.305 0.695 44 H 0.284 0.716 45 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -11.711 8.364 -20.049 24.680 hybrid contribution 1.064 0.150 0.677 1.270 sum -10.647 8.514 -19.373 23.689 Atomic orbital electron populations 1.21684 0.97032 0.99164 1.00214 1.21779 0.93710 0.98993 1.01423 1.18399 0.93754 0.89239 0.81106 0.98543 1.21537 0.91281 1.39092 1.06846 0.90905 1.25769 1.03324 0.94345 0.94986 1.70039 1.37181 1.38259 1.09823 0.85433 0.79082 0.78414 0.77618 1.19769 1.21300 1.18675 1.46185 1.15019 1.55730 1.17688 1.18815 0.82158 0.78664 0.87972 1.90731 1.52543 1.61366 1.42014 1.19980 0.96724 1.03552 0.94370 1.21708 0.98952 0.96603 0.92293 1.21470 0.96977 0.96947 0.97701 1.21455 0.92570 0.96324 0.98361 1.19313 0.94709 1.02229 0.95052 1.19982 0.95896 0.93015 0.82478 1.22107 0.95719 0.97586 1.04966 1.45476 1.75606 1.06004 1.08759 1.15776 0.76960 0.83913 0.82056 1.91066 1.56174 1.51485 1.46080 1.44357 1.68413 1.13774 1.07899 1.21006 0.73676 0.85598 0.87971 1.90903 1.46625 1.84631 1.12999 1.20953 0.95049 0.93853 0.97189 0.93448 0.95693 0.93814 0.93830 0.90932 0.92578 0.76128 0.83959 0.81293 0.82143 0.90732 0.89586 0.87569 0.69501 0.71590 0.86310 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.60 8.51 71.98 0.61 -4.99 16 2 C -0.12 -5.90 5.45 30.59 0.17 -5.73 16 3 C 0.28 14.28 2.24 44.24 0.10 14.37 16 4 H 0.00 -0.20 7.59 -2.38 -0.02 -0.22 16 5 C -0.55 -28.78 8.73 25.60 0.22 -28.55 16 6 H 0.07 3.53 7.74 -2.91 -0.02 3.51 16 7 C 0.02 0.85 5.29 84.66 0.45 1.30 16 8 N -0.91 -52.25 11.29 21.45 0.24 -52.00 16 9 Si 0.97 41.61 29.54 68.60 2.03 43.64 16 10 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16 11 H -0.29 -12.32 7.11 99.48 0.71 -11.61 16 12 H -0.26 -10.60 7.11 99.48 0.71 -9.90 16 13 N -0.70 -28.77 4.98 -448.98 -2.23 -31.00 16 14 C 0.54 21.81 6.34 86.79 0.55 22.36 16 15 O -0.58 -28.70 13.45 -3.87 -0.05 -28.75 16 16 C -0.14 -4.28 5.87 -20.09 -0.12 -4.40 16 17 C -0.08 -1.64 9.54 22.53 0.21 -1.43 16 18 C -0.11 -1.60 10.03 22.23 0.22 -1.38 16 19 C -0.07 -0.90 9.37 22.33 0.21 -0.69 16 20 C -0.11 -2.02 4.82 -19.90 -0.10 -2.12 16 21 C 0.18 2.57 1.16 2.24 0.00 2.57 16 22 C -0.15 -1.70 8.78 71.98 0.63 -1.07 16 23 N -0.69 -6.73 4.61 -443.26 -2.04 -8.78 16 24 C 0.71 11.06 9.00 179.44 1.61 12.68 16 25 O -0.57 -12.57 18.04 -3.84 -0.07 -12.64 16 26 N -0.67 -10.26 5.71 -440.67 -2.52 -12.78 16 27 C 0.53 10.45 7.35 87.89 0.65 11.09 16 28 O -0.48 -13.46 17.41 -2.89 -0.05 -13.51 16 29 C -0.05 -1.37 8.32 22.53 0.19 -1.19 16 30 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 31 H 0.02 1.22 7.84 -2.39 -0.02 1.20 16 32 H 0.04 1.91 5.62 -2.38 -0.01 1.90 16 33 H 0.04 1.99 8.14 -2.39 -0.02 1.97 16 34 H 0.07 3.99 5.95 -2.39 -0.01 3.98 16 35 H 0.27 14.39 8.31 -92.71 -0.77 13.62 16 36 H 0.40 13.76 6.57 -92.70 -0.61 13.15 16 37 H 0.14 2.69 6.41 -2.91 -0.02 2.67 16 38 H 0.17 1.21 8.06 -2.92 -0.02 1.18 16 39 H 0.16 1.04 6.66 -2.91 -0.02 1.02 16 40 H 0.07 1.18 7.45 -2.38 -0.02 1.17 16 41 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16 42 H 0.11 0.80 8.14 -2.39 -0.02 0.78 16 43 H 0.46 1.75 8.49 -92.71 -0.79 0.96 16 44 H 0.44 5.28 8.96 -92.71 -0.83 4.45 16 45 H 0.12 3.80 6.87 -2.91 -0.02 3.78 16 Total: -1.00 -77.33 372.24 -0.22 -77.56 By element: Atomic # 1 Polarization: 26.60 SS G_CDS: -1.14 Total: 25.46 kcal Atomic # 6 Polarization: 7.20 SS G_CDS: 5.61 Total: 12.81 kcal Atomic # 7 Polarization: -98.01 SS G_CDS: -6.55 Total: -104.56 kcal Atomic # 8 Polarization: -54.74 SS G_CDS: -0.17 Total: -54.91 kcal Atomic # 14 Polarization: 41.61 SS G_CDS: 2.03 Total: 43.64 kcal Total: -77.33 -0.22 -77.56 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273870054.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.255 kcal (2) G-P(sol) polarization free energy of solvation -77.332 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.587 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.225 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.557 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.812 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds