Wall clock time and date at job start Wed Apr 1 2020 03:40:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53001 * 109.47428 * 2 1 4 4 H 1.09000 * 109.46420 * 304.99694 * 3 2 1 5 5 C 1.50698 * 109.46957 * 184.99753 * 3 2 1 6 6 H 1.08000 * 119.99723 * 239.99106 * 5 3 2 7 7 C 1.37877 * 120.00139 * 60.00172 * 5 3 2 8 8 N 1.31512 * 119.99728 * 359.97438 * 7 5 3 9 9 Si 1.86793 * 120.00012 * 179.97438 * 7 5 3 10 10 H 1.48505 * 109.47426 * 359.97438 * 9 7 5 11 11 H 1.48501 * 109.47354 * 119.99473 * 9 7 5 12 12 H 1.48504 * 109.47144 * 239.99601 * 9 7 5 13 13 N 1.46498 * 109.47127 * 64.99406 * 3 2 1 14 14 C 1.34780 * 120.00113 * 275.00211 * 13 3 2 15 15 O 1.21550 * 119.99626 * 0.02562 * 14 13 3 16 16 C 1.47850 * 119.99977 * 180.02562 * 14 13 3 17 17 C 1.39593 * 120.13972 * 359.72003 * 16 14 13 18 18 C 1.37938 * 119.84737 * 180.27719 * 17 16 14 19 19 C 1.38377 * 120.14785 * 359.97438 * 18 17 16 20 20 C 1.38342 * 120.29110 * 0.02562 * 19 18 17 21 21 C 1.50699 * 119.92816 * 180.02562 * 20 19 18 22 22 C 1.53005 * 110.53505 * 92.80483 * 21 20 19 23 23 N 1.47308 * 110.60263 * 215.80576 * 21 20 19 24 24 C 1.34520 * 106.62547 * 118.52377 * 23 21 20 25 25 O 1.21536 * 123.77364 * 179.97438 * 24 23 21 26 26 N 1.33797 * 112.45412 * 0.02562 * 24 23 21 27 27 C 1.34764 * 111.64550 * 0.02562 * 26 24 23 28 28 O 1.21234 * 127.15883 * 179.97438 * 27 26 24 29 29 C 1.37972 * 120.14566 * 359.97438 * 20 19 18 30 30 H 1.09004 * 109.46970 * 300.00909 * 1 2 3 31 31 H 1.09003 * 109.46730 * 60.00398 * 1 2 3 32 32 H 1.08993 * 109.47115 * 180.02562 * 1 2 3 33 33 H 1.08995 * 109.47239 * 239.98966 * 2 1 3 34 34 H 1.09003 * 109.46730 * 119.99602 * 2 1 3 35 35 H 0.97006 * 119.99431 * 180.02562 * 8 7 5 36 36 H 0.97000 * 119.99672 * 95.00860 * 13 3 2 37 37 H 1.07994 * 120.07972 * 0.25567 * 17 16 14 38 38 H 1.08006 * 119.92782 * 179.97438 * 18 17 16 39 39 H 1.08004 * 119.85591 * 179.97438 * 19 18 17 40 40 H 1.08990 * 109.47074 * 60.00177 * 22 21 20 41 41 H 1.09004 * 109.46926 * 179.97438 * 22 21 20 42 42 H 1.08997 * 109.47015 * 299.99832 * 22 21 20 43 43 H 0.97004 * 126.68288 * 298.50791 * 23 21 20 44 44 H 0.97002 * 124.17132 * 179.97438 * 26 24 23 45 45 H 1.08001 * 120.07900 * 179.97438 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9814 -0.8419 5 6 3.5420 1.4442 -0.1238 6 1 4.1473 1.8888 0.6523 7 6 4.1434 0.8782 -1.2279 8 7 3.4063 0.3365 -2.1728 9 14 6.0050 0.8810 -1.3816 10 1 6.5988 1.5470 -0.1945 11 1 6.4971 -0.5178 -1.4626 12 1 6.3992 1.6163 -2.6101 13 7 1.6525 2.0975 1.2517 14 6 0.4352 2.6645 1.3668 15 8 -0.3412 2.6319 0.4321 16 6 0.0442 3.3261 2.6299 17 6 0.9313 3.3601 3.7071 18 6 0.5581 3.9739 4.8847 19 6 -0.6922 4.5556 4.9993 20 6 -1.5761 4.5253 3.9355 21 6 -2.9355 5.1618 4.0691 22 6 -2.9018 6.6087 3.5727 23 7 -3.9473 4.3822 3.3353 24 6 -4.8437 3.9614 4.2457 25 8 -5.8173 3.2868 3.9736 26 7 -4.5442 4.3694 5.4843 27 6 -3.4141 5.1034 5.5062 28 8 -2.8891 5.6108 6.4741 29 6 -1.2153 3.9145 2.7521 30 1 -0.3633 0.5140 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 -0.3633 -1.0276 0.0005 33 1 1.8934 -0.5140 -0.8898 34 1 1.8933 -0.5138 0.8901 35 1 3.8295 -0.0620 -2.9494 36 1 2.2720 2.1233 1.9977 37 1 1.9075 2.9066 3.6189 38 1 1.2434 4.0006 5.7191 39 1 -0.9797 5.0346 5.9236 40 1 -2.6045 6.6262 2.5242 41 1 -3.8923 7.0516 3.6766 42 1 -2.1847 7.1788 4.1633 43 1 -3.9639 4.2068 2.3814 44 1 -5.0753 4.1630 6.2693 45 1 -1.9063 3.8912 1.9224 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273870058.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:40:15 Heat of formation + Delta-G solvation = -56.226828 kcal Electronic energy + Delta-G solvation = -30224.488149 eV Core-core repulsion = 26014.681574 eV Total energy + Delta-G solvation = -4209.806574 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.98266 -39.98747 -39.10323 -38.27401 -36.70121 -35.13906 -34.84019 -32.65271 -31.90941 -31.27284 -30.70730 -29.66707 -27.06814 -25.52547 -24.21227 -23.34146 -23.06770 -22.28268 -21.41779 -20.12893 -19.39708 -18.78252 -17.97551 -17.11593 -16.95224 -16.43266 -16.20967 -16.06379 -15.75451 -15.42999 -15.01602 -14.78971 -14.65181 -14.38725 -14.16781 -13.92945 -13.77004 -13.26036 -12.98940 -12.86257 -12.72950 -12.51651 -12.07417 -11.94060 -11.55973 -11.40073 -11.30883 -11.21825 -11.00954 -10.89211 -10.77628 -10.58703 -10.35636 -10.23899 -9.94918 -9.68692 -9.21017 -9.11253 -9.09366 -9.01678 -8.55716 -7.90973 -6.17512 -4.27238 0.79801 1.03614 1.20349 2.02143 2.63557 2.67229 3.14412 3.20217 3.28419 3.30485 3.46332 3.80983 3.99912 4.05022 4.32113 4.35873 4.70300 4.83251 4.88250 5.03545 5.13893 5.15598 5.16719 5.18275 5.39825 5.54242 5.61239 5.66401 5.76871 6.13474 6.23332 6.24256 6.35627 6.37933 6.41682 6.53206 6.61502 6.66306 6.93633 6.99836 7.14778 7.29653 7.36140 7.56375 7.66794 7.76455 7.83872 8.12318 8.56069 8.70719 9.00749 9.40137 10.87830 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.019546 B = 0.002568 C = 0.002390 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1432.190239 B =10900.856420 C =11712.858849 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.128 4.128 3 C 0.270 3.730 4 H 0.051 0.949 5 C -0.535 4.535 6 H 0.062 0.938 7 C 0.067 3.933 8 N -0.881 5.881 9 Si 0.901 3.099 10 H -0.273 1.273 11 H -0.283 1.283 12 H -0.283 1.283 13 N -0.699 5.699 14 C 0.540 3.460 15 O -0.543 6.543 16 C -0.117 4.117 17 C -0.078 4.078 18 C -0.121 4.121 19 C -0.096 4.096 20 C -0.113 4.113 21 C 0.168 3.832 22 C -0.144 4.144 23 N -0.713 5.713 24 C 0.707 3.293 25 O -0.540 6.540 26 N -0.678 5.678 27 C 0.540 3.460 28 O -0.460 6.460 29 C -0.042 4.042 30 H 0.037 0.963 31 H 0.050 0.950 32 H 0.023 0.977 33 H 0.100 0.900 34 H 0.031 0.969 35 H 0.264 0.736 36 H 0.388 0.612 37 H 0.133 0.867 38 H 0.132 0.868 39 H 0.141 0.859 40 H 0.086 0.914 41 H 0.072 0.928 42 H 0.088 0.912 43 H 0.444 0.556 44 H 0.433 0.567 45 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.679 10.822 15.629 21.804 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.167 4.167 3 C 0.169 3.831 4 H 0.069 0.931 5 C -0.574 4.574 6 H 0.080 0.920 7 C -0.136 4.136 8 N -0.518 5.518 9 Si 0.729 3.271 10 H -0.197 1.197 11 H -0.209 1.209 12 H -0.209 1.209 13 N -0.346 5.346 14 C 0.325 3.675 15 O -0.423 6.423 16 C -0.120 4.120 17 C -0.096 4.096 18 C -0.139 4.139 19 C -0.114 4.114 20 C -0.114 4.114 21 C 0.077 3.923 22 C -0.202 4.202 23 N -0.379 5.379 24 C 0.406 3.594 25 O -0.413 6.413 26 N -0.349 5.349 27 C 0.325 3.675 28 O -0.329 6.329 29 C -0.062 4.062 30 H 0.056 0.944 31 H 0.069 0.931 32 H 0.042 0.958 33 H 0.118 0.882 34 H 0.050 0.950 35 H 0.074 0.926 36 H 0.221 0.779 37 H 0.151 0.849 38 H 0.150 0.850 39 H 0.158 0.842 40 H 0.105 0.895 41 H 0.090 0.910 42 H 0.106 0.894 43 H 0.291 0.709 44 H 0.276 0.724 45 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -11.375 10.613 15.051 21.646 hybrid contribution 1.128 -0.312 0.205 1.188 sum -10.247 10.301 15.256 21.068 Atomic orbital electron populations 1.21844 0.98315 0.98152 1.01194 1.21944 0.92645 0.99692 1.02380 1.18843 0.94338 0.89227 0.80724 0.93104 1.21246 0.90598 1.39155 1.06382 0.92027 1.24882 0.98655 0.94741 0.95358 1.69902 1.35083 1.37484 1.09346 0.86401 0.84787 0.77810 0.78150 1.19727 1.20851 1.20859 1.46478 1.14244 1.55234 1.18677 1.18101 0.83148 0.79517 0.86691 1.90743 1.51476 1.60208 1.39868 1.20333 0.95087 1.01119 0.95467 1.21555 0.99212 0.96525 0.92346 1.21084 0.96374 0.98527 0.97911 1.21460 0.93609 0.97808 0.98548 1.19195 0.93704 1.02804 0.95730 1.20121 0.87919 0.94817 0.89394 1.22043 1.03923 0.90480 1.03790 1.45736 1.25382 1.55973 1.10781 1.15818 0.83090 0.79677 0.80835 1.91078 1.28545 1.40808 1.80839 1.44299 1.27596 1.51348 1.11663 1.20580 0.79729 0.76464 0.90701 1.90796 1.58885 1.44587 1.38636 1.20867 0.95389 0.93656 0.96262 0.94357 0.93086 0.95780 0.88171 0.95002 0.92554 0.77889 0.84931 0.85007 0.84181 0.89529 0.90951 0.89355 0.70947 0.72410 0.84717 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.02 8.51 37.16 0.32 -2.70 16 2 C -0.13 -3.03 5.45 -26.73 -0.15 -3.17 16 3 C 0.27 6.54 2.24 -69.08 -0.15 6.39 16 4 H 0.05 1.43 7.58 -51.93 -0.39 1.04 16 5 C -0.54 -13.65 8.73 -34.44 -0.30 -13.95 16 6 H 0.06 1.50 7.74 -52.49 -0.41 1.10 16 7 C 0.07 1.75 5.29 -17.82 -0.09 1.65 16 8 N -0.88 -24.08 11.29 55.43 0.63 -23.45 16 9 Si 0.90 20.08 29.54 -169.99 -5.02 15.06 16 10 H -0.27 -5.94 7.11 56.52 0.40 -5.53 16 11 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 12 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 13 N -0.70 -13.79 4.97 -55.88 -0.28 -14.07 16 14 C 0.54 10.20 6.34 -12.33 -0.08 10.12 16 15 O -0.54 -11.90 13.48 5.32 0.07 -11.83 16 16 C -0.12 -1.69 5.87 -104.97 -0.62 -2.31 16 17 C -0.08 -0.92 9.54 -39.19 -0.37 -1.30 16 18 C -0.12 -1.20 10.03 -39.64 -0.40 -1.60 16 19 C -0.10 -0.95 9.18 -39.49 -0.36 -1.32 16 20 C -0.11 -1.16 4.88 -104.68 -0.51 -1.67 16 21 C 0.17 1.40 1.16 -133.24 -0.15 1.24 16 22 C -0.14 -0.91 8.97 37.16 0.33 -0.58 16 23 N -0.71 -6.12 5.37 -54.02 -0.29 -6.41 16 24 C 0.71 7.20 8.99 -88.02 -0.79 6.40 16 25 O -0.54 -7.42 18.04 5.33 0.10 -7.32 16 26 N -0.68 -5.41 5.70 -15.79 -0.09 -5.50 16 27 C 0.54 4.70 6.95 -10.55 -0.07 4.62 16 28 O -0.46 -4.68 15.88 5.60 0.09 -4.59 16 29 C -0.04 -0.53 8.89 -39.19 -0.35 -0.88 16 30 H 0.04 0.81 5.64 -51.93 -0.29 0.52 16 31 H 0.05 1.18 7.84 -51.93 -0.41 0.78 16 32 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.10 2.63 5.95 -51.93 -0.31 2.32 16 34 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.26 6.86 8.31 -40.82 -0.34 6.52 16 36 H 0.39 6.60 6.57 -40.82 -0.27 6.33 16 37 H 0.13 1.42 6.41 -52.49 -0.34 1.08 16 38 H 0.13 0.99 8.06 -52.48 -0.42 0.56 16 39 H 0.14 1.31 5.60 -52.48 -0.29 1.01 16 40 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 41 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 42 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 43 H 0.44 3.42 8.18 -40.82 -0.33 3.08 16 44 H 0.43 2.51 8.96 -40.82 -0.37 2.14 16 45 H 0.14 1.65 6.70 -52.49 -0.35 1.30 16 LS Contribution 370.88 15.07 5.59 5.59 Total: -1.00 -32.23 370.88 -8.39 -40.62 By element: Atomic # 1 Polarization: 16.38 SS G_CDS: -5.43 Total: 10.95 kcal Atomic # 6 Polarization: 4.71 SS G_CDS: -3.75 Total: 0.96 kcal Atomic # 7 Polarization: -49.40 SS G_CDS: -0.03 Total: -49.43 kcal Atomic # 8 Polarization: -24.00 SS G_CDS: 0.26 Total: -23.74 kcal Atomic # 14 Polarization: 20.08 SS G_CDS: -5.02 Total: 15.06 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -32.23 -8.39 -40.62 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273870058.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.606 kcal (2) G-P(sol) polarization free energy of solvation -32.230 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.836 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.390 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.621 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.227 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds