Wall clock time and date at job start Wed Apr 1 2020 03:40:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53001 * 109.47428 * 2 1 4 4 H 1.09000 * 109.46420 * 304.99694 * 3 2 1 5 5 C 1.50698 * 109.46957 * 184.99753 * 3 2 1 6 6 H 1.08000 * 119.99723 * 239.99106 * 5 3 2 7 7 C 1.37877 * 120.00139 * 60.00172 * 5 3 2 8 8 N 1.31512 * 119.99728 * 359.97438 * 7 5 3 9 9 Si 1.86793 * 120.00012 * 179.97438 * 7 5 3 10 10 H 1.48505 * 109.47426 * 359.97438 * 9 7 5 11 11 H 1.48501 * 109.47354 * 119.99473 * 9 7 5 12 12 H 1.48504 * 109.47144 * 239.99601 * 9 7 5 13 13 N 1.46498 * 109.47127 * 64.99406 * 3 2 1 14 14 C 1.34780 * 120.00113 * 275.00211 * 13 3 2 15 15 O 1.21550 * 119.99626 * 0.02562 * 14 13 3 16 16 C 1.47850 * 119.99977 * 180.02562 * 14 13 3 17 17 C 1.39593 * 120.13972 * 359.72003 * 16 14 13 18 18 C 1.37938 * 119.84737 * 180.27719 * 17 16 14 19 19 C 1.38377 * 120.14785 * 359.97438 * 18 17 16 20 20 C 1.38342 * 120.29110 * 0.02562 * 19 18 17 21 21 C 1.50699 * 119.92816 * 180.02562 * 20 19 18 22 22 C 1.53005 * 110.53505 * 92.80483 * 21 20 19 23 23 N 1.47308 * 110.60263 * 215.80576 * 21 20 19 24 24 C 1.34520 * 106.62547 * 118.52377 * 23 21 20 25 25 O 1.21536 * 123.77364 * 179.97438 * 24 23 21 26 26 N 1.33797 * 112.45412 * 0.02562 * 24 23 21 27 27 C 1.34764 * 111.64550 * 0.02562 * 26 24 23 28 28 O 1.21234 * 127.15883 * 179.97438 * 27 26 24 29 29 C 1.37972 * 120.14566 * 359.97438 * 20 19 18 30 30 H 1.09004 * 109.46970 * 300.00909 * 1 2 3 31 31 H 1.09003 * 109.46730 * 60.00398 * 1 2 3 32 32 H 1.08993 * 109.47115 * 180.02562 * 1 2 3 33 33 H 1.08995 * 109.47239 * 239.98966 * 2 1 3 34 34 H 1.09003 * 109.46730 * 119.99602 * 2 1 3 35 35 H 0.97006 * 119.99431 * 180.02562 * 8 7 5 36 36 H 0.97000 * 119.99672 * 95.00860 * 13 3 2 37 37 H 1.07994 * 120.07972 * 0.25567 * 17 16 14 38 38 H 1.08006 * 119.92782 * 179.97438 * 18 17 16 39 39 H 1.08004 * 119.85591 * 179.97438 * 19 18 17 40 40 H 1.08990 * 109.47074 * 60.00177 * 22 21 20 41 41 H 1.09004 * 109.46926 * 179.97438 * 22 21 20 42 42 H 1.08997 * 109.47015 * 299.99832 * 22 21 20 43 43 H 0.97004 * 126.68288 * 298.50791 * 23 21 20 44 44 H 0.97002 * 124.17132 * 179.97438 * 26 24 23 45 45 H 1.08001 * 120.07900 * 179.97438 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9814 -0.8419 5 6 3.5420 1.4442 -0.1238 6 1 4.1473 1.8888 0.6523 7 6 4.1434 0.8782 -1.2279 8 7 3.4063 0.3365 -2.1728 9 14 6.0050 0.8810 -1.3816 10 1 6.5988 1.5470 -0.1945 11 1 6.4971 -0.5178 -1.4626 12 1 6.3992 1.6163 -2.6101 13 7 1.6525 2.0975 1.2517 14 6 0.4352 2.6645 1.3668 15 8 -0.3412 2.6319 0.4321 16 6 0.0442 3.3261 2.6299 17 6 0.9313 3.3601 3.7071 18 6 0.5581 3.9739 4.8847 19 6 -0.6922 4.5556 4.9993 20 6 -1.5761 4.5253 3.9355 21 6 -2.9355 5.1618 4.0691 22 6 -2.9018 6.6087 3.5727 23 7 -3.9473 4.3822 3.3353 24 6 -4.8437 3.9614 4.2457 25 8 -5.8173 3.2868 3.9736 26 7 -4.5442 4.3694 5.4843 27 6 -3.4141 5.1034 5.5062 28 8 -2.8891 5.6108 6.4741 29 6 -1.2153 3.9145 2.7521 30 1 -0.3633 0.5140 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 -0.3633 -1.0276 0.0005 33 1 1.8934 -0.5140 -0.8898 34 1 1.8933 -0.5138 0.8901 35 1 3.8295 -0.0620 -2.9494 36 1 2.2720 2.1233 1.9977 37 1 1.9075 2.9066 3.6189 38 1 1.2434 4.0006 5.7191 39 1 -0.9797 5.0346 5.9236 40 1 -2.6045 6.6262 2.5242 41 1 -3.8923 7.0516 3.6766 42 1 -2.1847 7.1788 4.1633 43 1 -3.9639 4.2068 2.3814 44 1 -5.0753 4.1630 6.2693 45 1 -1.9063 3.8912 1.9224 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273870058.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:40:14 Heat of formation + Delta-G solvation = -80.052121 kcal Electronic energy + Delta-G solvation = -30225.521291 eV Core-core repulsion = 26014.681574 eV Total energy + Delta-G solvation = -4210.839716 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -43.73694 -41.20830 -40.02802 -39.40342 -37.56366 -36.92652 -35.60919 -34.36177 -33.24055 -32.39893 -31.92002 -30.51061 -28.90846 -26.25308 -25.53846 -24.63229 -24.13349 -23.27420 -22.39045 -21.64232 -20.93662 -19.67694 -19.12762 -18.16736 -17.84918 -17.51597 -17.35642 -17.09657 -16.90491 -16.70224 -16.28666 -16.22557 -15.76918 -15.54619 -15.18924 -14.93914 -14.67979 -14.57314 -14.54935 -13.98099 -13.59548 -13.53151 -13.36857 -13.19032 -13.14007 -12.87333 -12.86453 -12.70184 -12.29040 -12.15787 -12.08652 -12.06153 -11.60258 -11.55442 -11.38253 -11.04366 -10.79196 -10.69234 -10.53080 -10.04093 -9.96966 -9.61648 -8.16063 -6.33233 -0.18471 0.17842 0.42318 1.31400 1.44652 1.46317 1.57532 1.85227 1.85542 2.08598 2.34088 2.57258 2.74641 2.84720 3.14027 3.17533 3.70168 3.81891 3.88471 4.09549 4.14807 4.24744 4.43724 4.48385 4.56068 4.57282 4.67636 4.72680 4.77231 4.89240 4.98111 5.06092 5.10813 5.21810 5.27427 5.32276 5.35424 5.42622 5.55048 5.60864 5.64745 5.76225 5.77713 5.81491 5.92584 6.16336 6.24479 6.74498 6.94957 7.00513 7.32979 7.52715 8.89510 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.019546 B = 0.002568 C = 0.002390 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1432.190239 B =10900.856420 C =11712.858849 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.121 4.121 3 C 0.279 3.721 4 H 0.001 0.999 5 C -0.547 4.547 6 H 0.073 0.927 7 C 0.016 3.984 8 N -0.914 5.914 9 Si 0.969 3.031 10 H -0.259 1.259 11 H -0.280 1.280 12 H -0.285 1.285 13 N -0.698 5.698 14 C 0.538 3.462 15 O -0.582 6.582 16 C -0.141 4.141 17 C -0.077 4.077 18 C -0.112 4.112 19 C -0.086 4.086 20 C -0.107 4.107 21 C 0.170 3.830 22 C -0.143 4.143 23 N -0.707 5.707 24 C 0.709 3.291 25 O -0.578 6.578 26 N -0.667 5.667 27 C 0.547 3.453 28 O -0.469 6.469 29 C -0.047 4.047 30 H 0.042 0.958 31 H 0.027 0.973 32 H 0.044 0.956 33 H 0.073 0.927 34 H 0.040 0.960 35 H 0.265 0.735 36 H 0.402 0.598 37 H 0.143 0.857 38 H 0.165 0.835 39 H 0.154 0.846 40 H 0.089 0.911 41 H 0.084 0.916 42 H 0.096 0.904 43 H 0.448 0.552 44 H 0.444 0.556 45 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.815 11.978 18.428 24.071 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.160 4.160 3 C 0.176 3.824 4 H 0.019 0.981 5 C -0.585 4.585 6 H 0.091 0.909 7 C -0.184 4.184 8 N -0.553 5.553 9 Si 0.794 3.206 10 H -0.183 1.183 11 H -0.206 1.206 12 H -0.211 1.211 13 N -0.347 5.347 14 C 0.326 3.674 15 O -0.465 6.465 16 C -0.144 4.144 17 C -0.096 4.096 18 C -0.129 4.129 19 C -0.105 4.105 20 C -0.109 4.109 21 C 0.079 3.921 22 C -0.201 4.201 23 N -0.372 5.372 24 C 0.408 3.592 25 O -0.454 6.454 26 N -0.338 5.338 27 C 0.332 3.668 28 O -0.339 6.339 29 C -0.066 4.066 30 H 0.061 0.939 31 H 0.047 0.953 32 H 0.063 0.937 33 H 0.091 0.909 34 H 0.059 0.941 35 H 0.074 0.926 36 H 0.238 0.762 37 H 0.161 0.839 38 H 0.182 0.818 39 H 0.172 0.828 40 H 0.108 0.892 41 H 0.103 0.897 42 H 0.115 0.885 43 H 0.294 0.706 44 H 0.288 0.712 45 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -10.495 11.795 17.904 23.871 hybrid contribution 0.802 -0.603 -0.609 1.174 sum -9.693 11.191 17.295 22.767 Atomic orbital electron populations 1.21680 0.97068 0.99094 1.00244 1.21797 0.93672 0.99227 1.01348 1.18394 0.93746 0.89100 0.81176 0.98103 1.21595 0.91320 1.38886 1.06718 0.90919 1.25752 1.03224 0.94389 0.95050 1.70053 1.36978 1.38337 1.09902 0.85341 0.79237 0.77773 0.78248 1.18289 1.20588 1.21117 1.46202 1.15241 1.55516 1.17708 1.18752 0.82111 0.78632 0.87869 1.90716 1.52410 1.61557 1.41785 1.19990 0.96858 1.03378 0.94223 1.21691 0.99146 0.96558 0.92193 1.21412 0.96736 0.96942 0.97850 1.21716 0.93410 0.96751 0.98602 1.19276 0.94630 1.02047 0.94898 1.20211 0.86719 0.95747 0.89398 1.22091 1.05028 0.88926 1.04054 1.45764 1.24996 1.55492 1.10915 1.15881 0.82698 0.79206 0.81421 1.91057 1.30229 1.42628 1.81488 1.44149 1.27511 1.50727 1.11389 1.20502 0.79625 0.76156 0.90506 1.90802 1.59183 1.44983 1.38907 1.20849 0.94712 0.93977 0.97098 0.93945 0.95340 0.93741 0.90895 0.94092 0.92616 0.76188 0.83927 0.81751 0.82832 0.89200 0.89673 0.88546 0.70574 0.71178 0.85305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.55 8.51 71.98 0.61 -4.93 16 2 C -0.12 -5.91 5.45 30.60 0.17 -5.74 16 3 C 0.28 13.96 2.24 44.25 0.10 14.06 16 4 H 0.00 0.06 7.58 -2.39 -0.02 0.05 16 5 C -0.55 -28.14 8.73 25.60 0.22 -27.92 16 6 H 0.07 3.48 7.74 -2.91 -0.02 3.46 16 7 C 0.02 0.84 5.29 84.66 0.45 1.29 16 8 N -0.91 -51.45 11.29 21.45 0.24 -51.21 16 9 Si 0.97 41.14 29.54 68.60 2.03 43.16 16 10 H -0.26 -10.33 7.11 99.48 0.71 -9.63 16 11 H -0.28 -11.71 7.11 99.48 0.71 -11.00 16 12 H -0.29 -12.14 7.11 99.48 0.71 -11.43 16 13 N -0.70 -27.91 4.97 -448.98 -2.23 -30.14 16 14 C 0.54 20.74 6.34 86.79 0.55 21.29 16 15 O -0.58 -26.68 13.48 -3.87 -0.05 -26.74 16 16 C -0.14 -4.01 5.87 -20.09 -0.12 -4.12 16 17 C -0.08 -1.67 9.54 22.53 0.21 -1.45 16 18 C -0.11 -1.82 10.03 22.23 0.22 -1.59 16 19 C -0.09 -1.43 9.18 22.33 0.20 -1.23 16 20 C -0.11 -1.96 4.88 -19.90 -0.10 -2.06 16 21 C 0.17 2.47 1.16 2.24 0.00 2.47 16 22 C -0.14 -1.47 8.97 71.98 0.65 -0.83 16 23 N -0.71 -11.36 5.37 -443.25 -2.38 -13.74 16 24 C 0.71 13.69 8.99 179.44 1.61 15.30 16 25 O -0.58 -15.73 18.04 -3.83 -0.07 -15.80 16 26 N -0.67 -9.41 5.70 -441.12 -2.52 -11.93 16 27 C 0.55 8.13 6.95 87.94 0.61 8.74 16 28 O -0.47 -8.11 15.88 -2.89 -0.05 -8.15 16 29 C -0.05 -1.14 8.89 22.52 0.20 -0.94 16 30 H 0.04 1.84 5.64 -2.39 -0.01 1.83 16 31 H 0.03 1.36 7.84 -2.39 -0.02 1.35 16 32 H 0.04 1.76 8.14 -2.39 -0.02 1.75 16 33 H 0.07 3.98 5.95 -2.39 -0.01 3.96 16 34 H 0.04 1.87 8.14 -2.39 -0.02 1.85 16 35 H 0.26 14.11 8.31 -92.70 -0.77 13.34 16 36 H 0.40 13.46 6.57 -92.71 -0.61 12.85 16 37 H 0.14 2.72 6.41 -2.91 -0.02 2.70 16 38 H 0.16 1.65 8.06 -2.91 -0.02 1.62 16 39 H 0.15 2.24 5.60 -2.91 -0.02 2.23 16 40 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 41 H 0.08 0.69 8.14 -2.38 -0.02 0.67 16 42 H 0.10 0.88 8.14 -2.39 -0.02 0.86 16 43 H 0.45 6.70 8.18 -92.71 -0.76 5.94 16 44 H 0.44 4.35 8.96 -92.71 -0.83 3.51 16 45 H 0.13 3.20 6.70 -2.91 -0.02 3.18 16 Total: -1.00 -71.71 370.88 -0.54 -72.25 By element: Atomic # 1 Polarization: 31.07 SS G_CDS: -1.11 Total: 29.96 kcal Atomic # 6 Polarization: 6.74 SS G_CDS: 5.60 Total: 12.35 kcal Atomic # 7 Polarization: -100.13 SS G_CDS: -6.89 Total: -107.02 kcal Atomic # 8 Polarization: -50.53 SS G_CDS: -0.17 Total: -50.69 kcal Atomic # 14 Polarization: 41.14 SS G_CDS: 2.03 Total: 43.16 kcal Total: -71.71 -0.54 -72.25 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273870058.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.805 kcal (2) G-P(sol) polarization free energy of solvation -71.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.517 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.536 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.247 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.052 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds