Wall clock time and date at job start Wed Apr 1 2020 03:40:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.47206 * 2 1 4 4 H 1.09001 * 109.47094 * 305.54601 * 3 2 1 5 5 C 1.50707 * 109.46823 * 185.54971 * 3 2 1 6 6 H 1.08003 * 119.99196 * 245.59979 * 5 3 2 7 7 C 1.37872 * 120.00344 * 65.60077 * 5 3 2 8 8 N 1.31512 * 120.00262 * 195.95742 * 7 5 3 9 9 Si 1.86801 * 119.99805 * 16.22887 * 7 5 3 10 10 H 1.48507 * 109.46949 * 179.72736 * 9 7 5 11 11 H 1.48504 * 109.47345 * 299.72193 * 9 7 5 12 12 H 1.48493 * 109.47343 * 59.72519 * 9 7 5 13 13 N 1.46492 * 109.47221 * 65.55011 * 3 2 1 14 14 C 1.34778 * 119.99765 * 274.99748 * 13 3 2 15 15 O 1.21552 * 120.00310 * 0.02562 * 14 13 3 16 16 C 1.47849 * 120.00124 * 179.97438 * 14 13 3 17 17 C 1.39593 * 120.14369 * 359.72427 * 16 14 13 18 18 C 1.37937 * 119.85753 * 179.79065 * 17 16 14 19 19 C 1.38389 * 120.13697 * 0.48552 * 18 17 16 20 20 C 1.38331 * 120.29362 * 359.74805 * 19 18 17 21 21 C 1.50703 * 119.92458 * 179.97438 * 20 19 18 22 22 C 1.53004 * 110.53499 * 269.31721 * 21 20 19 23 23 N 1.47312 * 110.59815 * 146.49084 * 21 20 19 24 24 C 1.34874 * 106.43530 * 241.52070 * 23 21 20 25 25 O 1.21541 * 123.72616 * 179.97438 * 24 23 21 26 26 N 1.33791 * 112.50046 * 359.86155 * 24 23 21 27 27 C 1.34765 * 111.64436 * 0.09064 * 26 24 23 28 28 O 1.21235 * 127.15304 * 179.97438 * 27 26 24 29 29 C 1.37980 * 120.15074 * 0.02562 * 20 19 18 30 30 H 1.09004 * 109.46796 * 60.00144 * 1 2 3 31 31 H 1.09001 * 109.47247 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.47007 * 300.00197 * 1 2 3 33 33 H 1.08999 * 109.47007 * 239.99803 * 2 1 3 34 34 H 1.08998 * 109.46912 * 120.00298 * 2 1 3 35 35 H 0.96997 * 119.99721 * 355.11719 * 8 7 5 36 36 H 0.96998 * 120.00377 * 94.99404 * 13 3 2 37 37 H 1.08003 * 120.07253 * 0.02562 * 17 16 14 38 38 H 1.07988 * 119.93214 * 180.23083 * 18 17 16 39 39 H 1.08003 * 119.84509 * 179.76206 * 19 18 17 40 40 H 1.08996 * 109.46836 * 59.99750 * 22 21 20 41 41 H 1.08998 * 109.47370 * 179.97438 * 22 21 20 42 42 H 1.09006 * 109.46845 * 300.00401 * 22 21 20 43 43 H 0.96993 * 126.69555 * 61.43853 * 23 21 20 44 44 H 0.96998 * 124.17608 * 180.02562 * 26 24 23 45 45 H 1.07995 * 120.07732 * 179.97438 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5978 1.9842 -0.8362 5 6 3.5408 1.4446 -0.1374 6 1 4.1567 1.8041 0.6737 7 6 4.1275 0.9877 -1.2984 8 7 5.4088 0.6919 -1.3155 9 14 3.1039 0.7959 -2.8492 10 1 3.9650 0.2985 -3.9522 11 1 2.0071 -0.1742 -2.6017 12 1 2.5261 2.1107 -3.2267 13 7 1.6638 2.0935 1.2573 14 6 0.4476 2.6600 1.3852 15 8 -0.3373 2.6305 0.4575 16 6 0.0677 3.3165 2.6543 17 6 0.9641 3.3463 3.7239 18 6 0.6051 3.9642 4.9038 19 6 -0.6444 4.5450 5.0317 20 6 -1.5393 4.5147 3.9772 21 6 -2.8981 5.1493 4.1258 22 6 -3.9129 4.1291 4.6457 23 7 -3.3467 5.7196 2.8438 24 6 -3.4950 7.0448 3.0467 25 8 -3.8569 7.8229 2.1861 26 7 -3.2017 7.4067 4.3009 27 6 -2.8280 6.3497 5.0488 28 8 -2.5030 6.3574 6.2168 29 6 -1.1909 3.9040 2.7900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3633 0.5139 0.8900 33 1 1.8933 -0.5139 -0.8900 34 1 1.8933 -0.5139 0.8900 35 1 5.9561 0.8617 -0.5329 36 1 2.2900 2.1167 1.9977 37 1 1.9381 2.8898 3.6266 38 1 1.2991 3.9912 5.7307 39 1 -0.9220 5.0241 5.9590 40 1 -3.5883 3.7564 5.6171 41 1 -4.8879 4.6057 4.7470 42 1 -3.9852 3.2984 3.9435 43 1 -3.5029 5.2364 2.0175 44 1 -3.2509 8.3175 4.6309 45 1 -1.8906 3.8807 1.9677 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273870062.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:40:18 Heat of formation + Delta-G solvation = -55.911261 kcal Electronic energy + Delta-G solvation = -30299.001922 eV Core-core repulsion = 26089.209031 eV Total energy + Delta-G solvation = -4209.792890 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -43.00747 -40.10439 -39.15724 -38.41459 -36.75105 -35.35177 -34.89354 -32.70264 -32.10274 -31.46080 -30.96498 -29.75783 -27.30490 -25.57220 -24.22298 -23.39634 -22.68119 -22.23131 -21.52071 -20.32768 -19.60223 -18.85166 -18.18050 -17.40014 -17.15144 -16.71948 -16.32005 -16.14341 -16.05969 -15.54275 -15.17864 -14.87302 -14.61097 -14.46033 -14.16733 -13.85575 -13.74751 -13.34196 -13.04530 -12.90199 -12.78471 -12.60779 -12.45119 -12.22091 -12.07888 -11.75602 -11.47188 -11.28013 -10.96848 -10.81673 -10.75301 -10.63520 -10.48545 -9.99865 -9.93843 -9.67256 -9.37631 -9.18172 -9.12037 -9.08096 -8.39984 -8.18334 -6.63205 -4.27948 0.71306 0.96911 1.15464 1.97239 2.59074 2.61904 3.03872 3.34533 3.41567 3.41863 3.55211 3.71057 3.86481 3.96467 4.29723 4.37350 4.63760 4.76386 4.81175 4.96826 5.07143 5.09063 5.10467 5.12116 5.31408 5.48602 5.55793 5.58680 5.69339 6.01606 6.04091 6.06073 6.14352 6.16244 6.22442 6.33747 6.48276 6.57354 6.64283 6.73873 6.87727 6.89547 6.98024 7.28207 7.31771 7.57172 7.72007 8.17359 8.35239 8.62127 8.84853 9.41498 10.77676 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.017801 B = 0.002690 C = 0.002572 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1572.572260 B =10405.284617 C =10885.138659 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.140 4.140 3 C 0.247 3.753 4 H 0.043 0.957 5 C -0.618 4.618 6 H 0.061 0.939 7 C 0.040 3.960 8 N -0.897 5.897 9 Si 1.040 2.960 10 H -0.283 1.283 11 H -0.268 1.268 12 H -0.280 1.280 13 N -0.692 5.692 14 C 0.542 3.458 15 O -0.545 6.545 16 C -0.119 4.119 17 C -0.077 4.077 18 C -0.120 4.120 19 C -0.093 4.093 20 C -0.113 4.113 21 C 0.168 3.832 22 C -0.144 4.144 23 N -0.715 5.715 24 C 0.707 3.293 25 O -0.538 6.538 26 N -0.678 5.678 27 C 0.540 3.460 28 O -0.459 6.459 29 C -0.042 4.042 30 H 0.051 0.949 31 H 0.031 0.969 32 H 0.048 0.952 33 H 0.070 0.930 34 H 0.051 0.949 35 H 0.269 0.731 36 H 0.392 0.608 37 H 0.133 0.867 38 H 0.133 0.867 39 H 0.142 0.858 40 H 0.087 0.913 41 H 0.072 0.928 42 H 0.085 0.915 43 H 0.444 0.556 44 H 0.434 0.566 45 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.862 7.530 15.824 24.319 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.178 4.178 3 C 0.144 3.856 4 H 0.061 0.939 5 C -0.656 4.656 6 H 0.079 0.921 7 C -0.167 4.167 8 N -0.530 5.530 9 Si 0.867 3.133 10 H -0.209 1.209 11 H -0.195 1.195 12 H -0.206 1.206 13 N -0.340 5.340 14 C 0.327 3.673 15 O -0.425 6.425 16 C -0.122 4.122 17 C -0.095 4.095 18 C -0.138 4.138 19 C -0.111 4.111 20 C -0.114 4.114 21 C 0.077 3.923 22 C -0.202 4.202 23 N -0.381 5.381 24 C 0.406 3.594 25 O -0.411 6.411 26 N -0.348 5.348 27 C 0.325 3.675 28 O -0.328 6.328 29 C -0.061 4.061 30 H 0.070 0.930 31 H 0.050 0.950 32 H 0.067 0.933 33 H 0.088 0.912 34 H 0.070 0.930 35 H 0.079 0.921 36 H 0.226 0.774 37 H 0.150 0.850 38 H 0.151 0.849 39 H 0.159 0.841 40 H 0.106 0.894 41 H 0.091 0.909 42 H 0.104 0.896 43 H 0.291 0.709 44 H 0.277 0.723 45 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -17.316 7.308 13.700 23.259 hybrid contribution 0.389 0.780 1.839 2.035 sum -16.928 8.088 15.539 24.360 Atomic orbital electron populations 1.21888 0.97362 0.98942 1.01922 1.22366 0.93839 0.99654 1.01973 1.19104 0.95927 0.88613 0.81984 0.93892 1.22082 0.89597 1.49688 1.04264 0.92058 1.25678 0.97523 0.92328 1.01168 1.70879 1.06945 1.40901 1.34268 0.84119 0.75502 0.77761 0.75879 1.20877 1.19455 1.20570 1.46221 1.14233 1.55273 1.18235 1.18156 0.83012 0.79300 0.86810 1.90733 1.50989 1.60211 1.40565 1.20246 0.95208 1.01504 0.95254 1.21556 0.99112 0.96450 0.92425 1.21096 0.96455 0.98399 0.97887 1.21464 0.93214 0.97797 0.98672 1.19213 0.93688 1.02832 0.95713 1.20114 0.94770 0.93582 0.83823 1.22042 0.96929 0.97918 1.03316 1.45802 1.71650 1.06899 1.13714 1.15902 0.77942 0.83509 0.82063 1.91081 1.50910 1.54182 1.44925 1.44285 1.64629 1.13414 1.12515 1.20568 0.74626 0.85306 0.86968 1.90800 1.43501 1.84834 1.13698 1.20864 0.95583 0.93563 0.96076 0.92976 0.95013 0.93333 0.91160 0.93028 0.92083 0.77370 0.84967 0.84912 0.84088 0.89381 0.90911 0.89581 0.70938 0.72347 0.84682 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.79 8.52 37.16 0.32 -2.47 16 2 C -0.14 -3.01 5.28 -26.73 -0.14 -3.15 16 3 C 0.25 5.68 1.82 -69.08 -0.13 5.56 16 4 H 0.04 1.08 6.26 -51.93 -0.32 0.76 16 5 C -0.62 -16.24 9.01 -34.44 -0.31 -16.55 16 6 H 0.06 1.68 7.96 -52.48 -0.42 1.26 16 7 C 0.04 1.10 5.32 -17.82 -0.09 1.00 16 8 N -0.90 -26.23 13.70 55.43 0.76 -25.47 16 9 Si 1.04 24.59 26.27 -169.99 -4.46 20.12 16 10 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 11 H -0.27 -5.89 5.67 56.52 0.32 -5.57 16 12 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 13 N -0.69 -13.32 4.98 -55.88 -0.28 -13.60 16 14 C 0.54 9.80 6.37 -12.33 -0.08 9.73 16 15 O -0.54 -11.25 13.48 5.32 0.07 -11.18 16 16 C -0.12 -1.67 5.87 -104.97 -0.62 -2.28 16 17 C -0.08 -0.90 9.54 -39.19 -0.37 -1.27 16 18 C -0.12 -1.17 10.03 -39.64 -0.40 -1.57 16 19 C -0.09 -0.89 9.18 -39.49 -0.36 -1.26 16 20 C -0.11 -1.11 4.88 -104.68 -0.51 -1.62 16 21 C 0.17 1.33 1.16 -133.24 -0.15 1.17 16 22 C -0.14 -0.84 8.96 37.16 0.33 -0.50 16 23 N -0.71 -5.87 5.35 -53.93 -0.29 -6.15 16 24 C 0.71 7.02 9.00 -87.71 -0.79 6.23 16 25 O -0.54 -7.29 18.04 5.33 0.10 -7.19 16 26 N -0.68 -5.26 5.70 -15.71 -0.09 -5.35 16 27 C 0.54 4.55 6.98 -10.56 -0.07 4.48 16 28 O -0.46 -4.56 15.89 5.60 0.09 -4.47 16 29 C -0.04 -0.50 8.89 -39.18 -0.35 -0.85 16 30 H 0.05 1.05 7.88 -51.93 -0.41 0.64 16 31 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.05 0.92 5.63 -51.93 -0.29 0.63 16 33 H 0.07 1.59 4.73 -51.93 -0.25 1.34 16 34 H 0.05 1.08 8.14 -51.93 -0.42 0.65 16 35 H 0.27 7.77 8.73 -40.82 -0.36 7.42 16 36 H 0.39 6.69 6.56 -40.82 -0.27 6.42 16 37 H 0.13 1.42 6.41 -52.48 -0.34 1.08 16 38 H 0.13 0.98 8.06 -52.49 -0.42 0.55 16 39 H 0.14 1.27 5.67 -52.48 -0.30 0.97 16 40 H 0.09 0.49 8.14 -51.93 -0.42 0.06 16 41 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 42 H 0.09 0.46 8.14 -51.93 -0.42 0.03 16 43 H 0.44 3.21 8.13 -40.82 -0.33 2.87 16 44 H 0.43 2.44 8.96 -40.82 -0.37 2.07 16 45 H 0.14 1.57 6.61 -52.49 -0.35 1.22 16 LS Contribution 366.40 15.07 5.52 5.52 Total: -1.00 -33.32 366.40 -7.72 -41.04 By element: Atomic # 1 Polarization: 15.48 SS G_CDS: -5.41 Total: 10.08 kcal Atomic # 6 Polarization: 0.39 SS G_CDS: -3.73 Total: -3.34 kcal Atomic # 7 Polarization: -50.68 SS G_CDS: 0.10 Total: -50.58 kcal Atomic # 8 Polarization: -23.10 SS G_CDS: 0.26 Total: -22.84 kcal Atomic # 14 Polarization: 24.59 SS G_CDS: -4.46 Total: 20.12 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -33.32 -7.72 -41.04 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273870062.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.871 kcal (2) G-P(sol) polarization free energy of solvation -33.324 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.195 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.717 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.040 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.911 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds