Wall clock time and date at job start Wed Apr 1 2020 03:40:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.47206 * 2 1 4 4 H 1.09001 * 109.47094 * 305.54601 * 3 2 1 5 5 C 1.50707 * 109.46823 * 185.54971 * 3 2 1 6 6 H 1.08003 * 119.99196 * 245.59979 * 5 3 2 7 7 C 1.37872 * 120.00344 * 65.60077 * 5 3 2 8 8 N 1.31512 * 120.00262 * 195.95742 * 7 5 3 9 9 Si 1.86801 * 119.99805 * 16.22887 * 7 5 3 10 10 H 1.48507 * 109.46949 * 179.72736 * 9 7 5 11 11 H 1.48504 * 109.47345 * 299.72193 * 9 7 5 12 12 H 1.48493 * 109.47343 * 59.72519 * 9 7 5 13 13 N 1.46492 * 109.47221 * 65.55011 * 3 2 1 14 14 C 1.34778 * 119.99765 * 274.99748 * 13 3 2 15 15 O 1.21552 * 120.00310 * 0.02562 * 14 13 3 16 16 C 1.47849 * 120.00124 * 179.97438 * 14 13 3 17 17 C 1.39593 * 120.14369 * 359.72427 * 16 14 13 18 18 C 1.37937 * 119.85753 * 179.79065 * 17 16 14 19 19 C 1.38389 * 120.13697 * 0.48552 * 18 17 16 20 20 C 1.38331 * 120.29362 * 359.74805 * 19 18 17 21 21 C 1.50703 * 119.92458 * 179.97438 * 20 19 18 22 22 C 1.53004 * 110.53499 * 269.31721 * 21 20 19 23 23 N 1.47312 * 110.59815 * 146.49084 * 21 20 19 24 24 C 1.34874 * 106.43530 * 241.52070 * 23 21 20 25 25 O 1.21541 * 123.72616 * 179.97438 * 24 23 21 26 26 N 1.33791 * 112.50046 * 359.86155 * 24 23 21 27 27 C 1.34765 * 111.64436 * 0.09064 * 26 24 23 28 28 O 1.21235 * 127.15304 * 179.97438 * 27 26 24 29 29 C 1.37980 * 120.15074 * 0.02562 * 20 19 18 30 30 H 1.09004 * 109.46796 * 60.00144 * 1 2 3 31 31 H 1.09001 * 109.47247 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.47007 * 300.00197 * 1 2 3 33 33 H 1.08999 * 109.47007 * 239.99803 * 2 1 3 34 34 H 1.08998 * 109.46912 * 120.00298 * 2 1 3 35 35 H 0.96997 * 119.99721 * 355.11719 * 8 7 5 36 36 H 0.96998 * 120.00377 * 94.99404 * 13 3 2 37 37 H 1.08003 * 120.07253 * 0.02562 * 17 16 14 38 38 H 1.07988 * 119.93214 * 180.23083 * 18 17 16 39 39 H 1.08003 * 119.84509 * 179.76206 * 19 18 17 40 40 H 1.08996 * 109.46836 * 59.99750 * 22 21 20 41 41 H 1.08998 * 109.47370 * 179.97438 * 22 21 20 42 42 H 1.09006 * 109.46845 * 300.00401 * 22 21 20 43 43 H 0.96993 * 126.69555 * 61.43853 * 23 21 20 44 44 H 0.96998 * 124.17608 * 180.02562 * 26 24 23 45 45 H 1.07995 * 120.07732 * 179.97438 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5978 1.9842 -0.8362 5 6 3.5408 1.4446 -0.1374 6 1 4.1567 1.8041 0.6737 7 6 4.1275 0.9877 -1.2984 8 7 5.4088 0.6919 -1.3155 9 14 3.1039 0.7959 -2.8492 10 1 3.9650 0.2985 -3.9522 11 1 2.0071 -0.1742 -2.6017 12 1 2.5261 2.1107 -3.2267 13 7 1.6638 2.0935 1.2573 14 6 0.4476 2.6600 1.3852 15 8 -0.3373 2.6305 0.4575 16 6 0.0677 3.3165 2.6543 17 6 0.9641 3.3463 3.7239 18 6 0.6051 3.9642 4.9038 19 6 -0.6444 4.5450 5.0317 20 6 -1.5393 4.5147 3.9772 21 6 -2.8981 5.1493 4.1258 22 6 -3.9129 4.1291 4.6457 23 7 -3.3467 5.7196 2.8438 24 6 -3.4950 7.0448 3.0467 25 8 -3.8569 7.8229 2.1861 26 7 -3.2017 7.4067 4.3009 27 6 -2.8280 6.3497 5.0488 28 8 -2.5030 6.3574 6.2168 29 6 -1.1909 3.9040 2.7900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3633 0.5139 0.8900 33 1 1.8933 -0.5139 -0.8900 34 1 1.8933 -0.5139 0.8900 35 1 5.9561 0.8617 -0.5329 36 1 2.2900 2.1167 1.9977 37 1 1.9381 2.8898 3.6266 38 1 1.2991 3.9912 5.7307 39 1 -0.9220 5.0241 5.9590 40 1 -3.5883 3.7564 5.6171 41 1 -4.8879 4.6057 4.7470 42 1 -3.9852 3.2984 3.9435 43 1 -3.5029 5.2364 2.0175 44 1 -3.2509 8.3175 4.6309 45 1 -1.8906 3.8807 1.9677 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273870062.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:40:17 Heat of formation + Delta-G solvation = -81.579338 kcal Electronic energy + Delta-G solvation = -30300.114973 eV Core-core repulsion = 26089.209031 eV Total energy + Delta-G solvation = -4210.905942 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -43.73200 -41.29616 -40.05758 -39.46649 -37.58362 -37.05683 -35.63358 -34.51109 -33.53588 -32.46462 -31.98919 -30.53778 -29.08573 -26.24748 -25.35985 -24.24863 -24.14354 -23.34563 -22.46613 -21.72053 -21.08047 -19.95374 -19.47607 -18.62849 -17.88823 -17.63176 -17.44183 -17.16047 -16.94097 -16.71814 -16.38628 -15.94994 -15.68172 -15.52011 -15.26384 -15.02631 -14.74153 -14.58672 -14.51722 -14.30662 -14.12019 -13.71739 -13.55271 -13.38432 -13.18817 -12.90850 -12.68686 -12.49138 -12.31682 -12.30004 -12.10731 -11.79153 -11.57171 -11.42127 -11.39272 -11.11777 -10.84702 -10.70879 -10.49457 -10.09717 -10.01093 -9.78754 -8.80476 -6.45706 -0.23900 0.13926 0.40715 1.29438 1.44690 1.50105 1.68557 1.80001 1.83522 2.04657 2.37061 2.41340 2.72087 2.79736 3.00815 3.14206 3.67196 3.74348 3.84364 4.04314 4.11731 4.20308 4.32332 4.39072 4.40917 4.51758 4.57984 4.67152 4.71512 4.85445 4.86613 4.96218 5.10513 5.10690 5.18766 5.22359 5.25349 5.31187 5.32195 5.54451 5.60979 5.64755 5.67324 5.75477 5.76830 5.99895 6.23333 6.51330 6.79224 6.99149 7.26103 7.37749 8.59339 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.017801 B = 0.002690 C = 0.002572 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1572.572260 B =10405.284617 C =10885.138659 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.136 4.136 3 C 0.252 3.748 4 H 0.023 0.977 5 C -0.613 4.613 6 H 0.040 0.960 7 C -0.004 4.004 8 N -0.929 5.929 9 Si 1.069 2.931 10 H -0.284 1.284 11 H -0.241 1.241 12 H -0.276 1.276 13 N -0.697 5.697 14 C 0.542 3.458 15 O -0.574 6.574 16 C -0.143 4.143 17 C -0.079 4.079 18 C -0.113 4.113 19 C -0.084 4.084 20 C -0.107 4.107 21 C 0.171 3.829 22 C -0.143 4.143 23 N -0.707 5.707 24 C 0.708 3.292 25 O -0.577 6.577 26 N -0.667 5.667 27 C 0.545 3.455 28 O -0.470 6.470 29 C -0.044 4.044 30 H 0.040 0.960 31 H 0.056 0.944 32 H 0.049 0.951 33 H 0.059 0.941 34 H 0.055 0.945 35 H 0.258 0.742 36 H 0.401 0.599 37 H 0.137 0.863 38 H 0.162 0.838 39 H 0.154 0.846 40 H 0.095 0.905 41 H 0.084 0.916 42 H 0.092 0.908 43 H 0.449 0.551 44 H 0.443 0.557 45 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.763 7.565 17.712 26.888 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.175 4.175 3 C 0.147 3.853 4 H 0.041 0.959 5 C -0.651 4.651 6 H 0.059 0.941 7 C -0.205 4.205 8 N -0.564 5.564 9 Si 0.892 3.108 10 H -0.209 1.209 11 H -0.166 1.166 12 H -0.201 1.201 13 N -0.345 5.345 14 C 0.330 3.670 15 O -0.456 6.456 16 C -0.146 4.146 17 C -0.098 4.098 18 C -0.131 4.131 19 C -0.102 4.102 20 C -0.108 4.108 21 C 0.080 3.920 22 C -0.200 4.200 23 N -0.372 5.372 24 C 0.408 3.592 25 O -0.453 6.453 26 N -0.338 5.338 27 C 0.331 3.669 28 O -0.339 6.339 29 C -0.063 4.063 30 H 0.060 0.940 31 H 0.075 0.925 32 H 0.068 0.932 33 H 0.078 0.922 34 H 0.074 0.926 35 H 0.068 0.932 36 H 0.237 0.763 37 H 0.155 0.845 38 H 0.180 0.820 39 H 0.172 0.828 40 H 0.114 0.886 41 H 0.103 0.897 42 H 0.111 0.889 43 H 0.296 0.704 44 H 0.288 0.712 45 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -19.224 7.340 15.646 25.850 hybrid contribution 0.978 0.853 1.404 1.912 sum -18.246 8.193 17.050 26.282 Atomic orbital electron populations 1.21765 0.95401 1.00433 1.01450 1.22253 0.95506 0.98139 1.01624 1.18784 0.93479 0.89814 0.83202 0.95907 1.22288 0.91496 1.48085 1.03281 0.94148 1.26784 0.97684 0.92131 1.03912 1.70979 1.07941 1.43438 1.33997 0.83746 0.75249 0.78648 0.73157 1.20935 1.16570 1.20134 1.46036 1.15323 1.55835 1.17320 1.18699 0.81914 0.78392 0.87960 1.90705 1.51626 1.61234 1.42076 1.19951 0.96893 1.03658 0.94064 1.21660 0.98958 0.96668 0.92521 1.21393 0.96925 0.97019 0.97763 1.21700 0.92935 0.96741 0.98857 1.19302 0.94539 1.02069 0.94914 1.20202 0.94467 0.93855 0.83492 1.22095 0.96743 0.97490 1.03709 1.45820 1.70843 1.06398 1.14183 1.15977 0.77509 0.83621 0.82141 1.91059 1.52807 1.55231 1.46197 1.44156 1.63970 1.14010 1.11688 1.20544 0.74256 0.85356 0.86763 1.90805 1.44079 1.84939 1.14113 1.20872 0.94868 0.93678 0.96901 0.94040 0.92454 0.93239 0.92233 0.92634 0.93246 0.76292 0.84501 0.82038 0.82814 0.88610 0.89695 0.88922 0.70430 0.71200 0.84808 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.94 8.52 71.98 0.61 -4.33 16 2 C -0.14 -5.75 5.28 30.59 0.16 -5.59 16 3 C 0.25 11.60 1.82 44.25 0.08 11.68 16 4 H 0.02 1.16 6.26 -2.39 -0.01 1.15 16 5 C -0.61 -32.75 9.01 25.60 0.23 -32.52 16 6 H 0.04 2.27 7.96 -2.91 -0.02 2.25 16 7 C 0.00 -0.24 5.32 84.65 0.45 0.21 16 8 N -0.93 -55.53 13.70 21.44 0.29 -55.23 16 9 Si 1.07 49.64 26.27 68.60 1.80 51.44 16 10 H -0.28 -13.12 7.11 99.48 0.71 -12.41 16 11 H -0.24 -10.08 5.67 99.48 0.56 -9.52 16 12 H -0.28 -12.51 7.11 99.48 0.71 -11.81 16 13 N -0.70 -26.75 4.98 -448.98 -2.23 -28.98 16 14 C 0.54 19.43 6.37 86.79 0.55 19.98 16 15 O -0.57 -23.65 13.48 -3.88 -0.05 -23.70 16 16 C -0.14 -3.83 5.87 -20.09 -0.12 -3.95 16 17 C -0.08 -1.70 9.54 22.53 0.21 -1.49 16 18 C -0.11 -1.84 10.03 22.23 0.22 -1.62 16 19 C -0.08 -1.34 9.18 22.33 0.20 -1.14 16 20 C -0.11 -1.83 4.88 -19.90 -0.10 -1.93 16 21 C 0.17 2.27 1.16 2.24 0.00 2.28 16 22 C -0.14 -1.24 8.96 71.98 0.65 -0.59 16 23 N -0.71 -10.44 5.35 -442.75 -2.37 -12.81 16 24 C 0.71 13.14 9.00 179.33 1.61 14.75 16 25 O -0.58 -15.32 18.04 -3.85 -0.07 -15.39 16 26 N -0.67 -9.10 5.70 -440.86 -2.51 -11.62 16 27 C 0.55 7.78 6.98 87.94 0.61 8.40 16 28 O -0.47 -7.94 15.89 -2.89 -0.05 -7.98 16 29 C -0.04 -0.98 8.89 22.53 0.20 -0.78 16 30 H 0.04 1.61 7.88 -2.39 -0.02 1.59 16 31 H 0.06 1.81 8.14 -2.39 -0.02 1.80 16 32 H 0.05 1.81 5.63 -2.39 -0.01 1.80 16 33 H 0.06 2.62 4.73 -2.39 -0.01 2.61 16 34 H 0.05 2.26 8.14 -2.39 -0.02 2.24 16 35 H 0.26 15.44 8.73 -92.71 -0.81 14.63 16 36 H 0.40 13.68 6.56 -92.71 -0.61 13.07 16 37 H 0.14 2.74 6.41 -2.91 -0.02 2.72 16 38 H 0.16 1.71 8.06 -2.92 -0.02 1.69 16 39 H 0.15 2.17 5.67 -2.91 -0.02 2.15 16 40 H 0.10 0.73 8.14 -2.39 -0.02 0.71 16 41 H 0.08 0.57 8.14 -2.39 -0.02 0.55 16 42 H 0.09 0.72 8.14 -2.38 -0.02 0.70 16 43 H 0.45 5.91 8.13 -92.71 -0.75 5.16 16 44 H 0.44 4.23 8.96 -92.71 -0.83 3.39 16 45 H 0.13 2.97 6.61 -2.91 -0.02 2.95 16 Total: -1.00 -72.61 366.40 -0.88 -73.49 By element: Atomic # 1 Polarization: 28.72 SS G_CDS: -1.28 Total: 27.44 kcal Atomic # 6 Polarization: -2.24 SS G_CDS: 5.59 Total: 3.35 kcal Atomic # 7 Polarization: -101.83 SS G_CDS: -6.82 Total: -108.65 kcal Atomic # 8 Polarization: -46.91 SS G_CDS: -0.17 Total: -47.08 kcal Atomic # 14 Polarization: 49.64 SS G_CDS: 1.80 Total: 51.44 kcal Total: -72.61 -0.88 -73.49 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273870062.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.087 kcal (2) G-P(sol) polarization free energy of solvation -72.613 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.701 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.879 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.492 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.579 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds