Wall clock time and date at job start Wed Apr 1 2020 03:40:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53008 * 109.46836 * 2 1 4 4 H 1.09004 * 109.46859 * 56.31334 * 3 2 1 5 5 C 1.50702 * 109.46844 * 176.30703 * 3 2 1 6 6 H 1.07999 * 119.99514 * 114.80902 * 5 3 2 7 7 C 1.37873 * 120.00204 * 294.80593 * 5 3 2 8 8 N 1.31518 * 119.99820 * 162.48608 * 7 5 3 9 9 Si 1.86803 * 120.00085 * 342.48210 * 7 5 3 10 10 H 1.48507 * 109.46927 * 270.00195 * 9 7 5 11 11 H 1.48496 * 109.47121 * 30.00208 * 9 7 5 12 12 H 1.48495 * 109.46902 * 150.00273 * 9 7 5 13 13 N 1.46496 * 109.47320 * 296.31229 * 3 2 1 14 14 C 1.34780 * 120.00095 * 84.99839 * 13 3 2 15 15 O 1.21579 * 119.99601 * 359.97438 * 14 13 3 16 16 C 1.47593 * 119.99859 * 180.02562 * 14 13 3 17 17 C 1.39749 * 120.07438 * 359.72282 * 16 14 13 18 18 C 1.37670 * 119.92399 * 179.74586 * 17 16 14 19 19 C 1.39125 * 120.07471 * 0.50753 * 18 17 16 20 20 N 1.39440 * 119.92570 * 179.74415 * 19 18 17 21 21 N 1.39945 * 119.77388 * 50.49624 * 20 19 18 22 22 C 1.34474 * 120.58238 * 198.50721 * 21 20 19 23 23 O 1.21283 * 119.89935 * 180.49356 * 22 21 20 24 24 C 1.50629 * 120.24501 * 0.76148 * 22 21 20 25 25 C 1.52945 * 109.57519 * 325.48984 * 24 22 21 26 26 C 1.34647 * 119.76955 * 230.76731 * 20 19 18 27 27 O 1.21279 * 119.85433 * 0.20729 * 26 20 19 28 28 C 1.39133 * 120.15024 * 359.77119 * 19 18 17 29 29 C 1.37664 * 120.06970 * 359.96987 * 28 19 18 30 30 H 1.09004 * 109.46817 * 299.99358 * 1 2 3 31 31 H 1.08995 * 109.47361 * 59.99807 * 1 2 3 32 32 H 1.08999 * 109.46712 * 180.02562 * 1 2 3 33 33 H 1.09000 * 109.47499 * 240.00858 * 2 1 3 34 34 H 1.09000 * 109.47829 * 120.00244 * 2 1 3 35 35 H 0.97002 * 119.99835 * 354.90845 * 8 7 5 36 36 H 0.97001 * 119.99489 * 264.99979 * 13 3 2 37 37 H 1.08002 * 120.03761 * 0.02562 * 17 16 14 38 38 H 1.08007 * 119.96210 * 180.25426 * 18 17 16 39 39 H 0.97006 * 119.76253 * 18.77769 * 21 20 19 40 40 H 1.08999 * 109.45312 * 205.45708 * 24 22 21 41 41 H 1.09000 * 109.45568 * 85.52185 * 24 22 21 42 42 H 1.08995 * 109.45543 * 288.12051 * 25 24 22 43 43 H 1.08997 * 109.45313 * 168.18164 * 25 24 22 44 44 H 1.07992 * 119.96697 * 180.02562 * 28 19 18 45 45 H 1.08007 * 120.03928 * 179.97438 * 29 28 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6236 1.9751 0.8551 5 6 3.5442 1.4436 0.0915 6 1 4.1349 1.8181 -0.7314 7 6 4.1662 0.9665 1.2257 8 7 5.4404 0.6426 1.1900 9 14 3.1992 0.7802 2.8131 10 1 3.2856 2.0391 3.5960 11 1 1.7776 0.4913 2.4956 12 1 3.7656 -0.3379 3.6094 13 7 1.6255 2.1071 -1.2381 14 6 0.4060 2.6747 -1.3226 15 8 -0.3503 2.6348 -0.3715 16 6 -0.0117 3.3437 -2.5701 17 6 0.8582 3.3945 -3.6627 18 6 0.4634 4.0147 -4.8266 19 6 -0.7960 4.5997 -4.9124 20 7 -1.1906 5.2317 -6.0910 21 7 -1.0602 4.5648 -7.3144 22 6 -1.0747 5.2494 -8.4718 23 8 -0.9697 4.6580 -9.5254 24 6 -1.2147 6.7492 -8.4645 25 6 -2.1241 7.1733 -7.3102 26 6 -1.6894 6.4815 -6.0448 27 8 -1.7895 7.0525 -4.9795 28 6 -1.6624 4.5560 -3.8246 29 6 -1.2759 3.9328 -2.6596 30 1 -0.3633 0.5138 0.8901 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 1.8934 -0.5137 -0.8900 34 1 1.8934 -0.5138 0.8899 35 1 5.9241 0.6689 0.3497 36 1 2.2288 2.1385 -1.9970 37 1 1.8374 2.9438 -3.5955 38 1 1.1337 4.0507 -5.6728 39 1 -0.9625 3.5998 -7.3288 40 1 -1.6492 7.0778 -9.4086 41 1 -0.2325 7.2049 -8.3391 42 1 -3.1536 6.8980 -7.5391 43 1 -2.0590 8.2528 -7.1745 44 1 -2.6394 5.0107 -3.8946 45 1 -1.9487 3.8995 -1.8153 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273891826.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:40:46 Heat of formation + Delta-G solvation = -38.735995 kcal Electronic energy + Delta-G solvation = -29678.062016 eV Core-core repulsion = 25469.013901 eV Total energy + Delta-G solvation = -4209.048115 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.88382 -40.06863 -39.48638 -38.30308 -36.77661 -35.33102 -34.21977 -32.73898 -32.24710 -31.55612 -31.12652 -29.55888 -27.26871 -26.24132 -24.50283 -23.26270 -22.54806 -22.31378 -20.81000 -19.67930 -19.47964 -18.99141 -18.25789 -18.15502 -17.44868 -16.93678 -16.13449 -15.90585 -15.36807 -15.28759 -15.16868 -15.00017 -14.70772 -14.56816 -13.95559 -13.79273 -13.47880 -13.33264 -13.31630 -13.01126 -12.94545 -12.52736 -12.41452 -12.26924 -12.17382 -11.96810 -11.67374 -11.27902 -10.86584 -10.74864 -10.73310 -10.60093 -10.51113 -9.95537 -9.67529 -9.63301 -9.35924 -9.27650 -9.09110 -8.50007 -8.41343 -8.13175 -6.61560 -4.26273 0.45998 1.11223 1.15509 1.55339 2.04714 2.71008 3.04708 3.39118 3.43345 3.57525 3.74979 3.81971 3.92486 3.97187 4.14655 4.34722 4.41082 4.56503 4.59197 4.79902 4.96059 4.98072 5.00803 5.10732 5.11934 5.25147 5.42492 5.61526 5.71637 5.93504 5.97674 6.02991 6.05894 6.19342 6.20566 6.25747 6.56452 6.66013 6.75596 6.87668 6.90520 6.99857 7.11140 7.31044 7.33062 7.57508 7.59879 8.19758 8.37668 8.64004 8.87345 9.41940 10.77633 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.021592 B = 0.002266 C = 0.002199 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1296.470395 B =12354.269558 C =12730.246820 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.131 4.131 3 C 0.247 3.753 4 H 0.045 0.955 5 C -0.620 4.620 6 H 0.062 0.938 7 C 0.043 3.957 8 N -0.896 5.896 9 Si 1.035 2.965 10 H -0.283 1.283 11 H -0.265 1.265 12 H -0.284 1.284 13 N -0.693 5.693 14 C 0.541 3.459 15 O -0.543 6.543 16 C -0.114 4.114 17 C -0.074 4.074 18 C -0.127 4.127 19 C 0.134 3.866 20 N -0.363 5.363 21 N -0.514 5.514 22 C 0.523 3.477 23 O -0.520 6.520 24 C -0.141 4.141 25 C -0.136 4.136 26 C 0.519 3.481 27 O -0.498 6.498 28 C -0.102 4.102 29 C -0.049 4.049 30 H 0.053 0.947 31 H 0.046 0.954 32 H 0.030 0.970 33 H 0.050 0.950 34 H 0.063 0.937 35 H 0.270 0.730 36 H 0.392 0.608 37 H 0.137 0.863 38 H 0.132 0.868 39 H 0.427 0.573 40 H 0.122 0.878 41 H 0.112 0.888 42 H 0.112 0.888 43 H 0.123 0.877 44 H 0.133 0.867 45 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.950 10.545 -19.541 26.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.170 4.170 3 C 0.144 3.856 4 H 0.063 0.937 5 C -0.658 4.658 6 H 0.080 0.920 7 C -0.164 4.164 8 N -0.528 5.528 9 Si 0.862 3.138 10 H -0.210 1.210 11 H -0.191 1.191 12 H -0.210 1.210 13 N -0.341 5.341 14 C 0.327 3.673 15 O -0.422 6.422 16 C -0.117 4.117 17 C -0.094 4.094 18 C -0.147 4.147 19 C 0.044 3.956 20 N -0.184 5.184 21 N -0.266 5.266 22 C 0.310 3.690 23 O -0.393 6.393 24 C -0.181 4.181 25 C -0.176 4.176 26 C 0.307 3.693 27 O -0.368 6.368 28 C -0.122 4.122 29 C -0.069 4.069 30 H 0.072 0.928 31 H 0.065 0.935 32 H 0.049 0.951 33 H 0.069 0.931 34 H 0.081 0.919 35 H 0.080 0.920 36 H 0.226 0.774 37 H 0.155 0.845 38 H 0.150 0.850 39 H 0.271 0.729 40 H 0.140 0.860 41 H 0.130 0.870 42 H 0.130 0.870 43 H 0.141 0.859 44 H 0.151 0.849 45 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -15.335 10.349 -17.305 25.332 hybrid contribution 0.446 -0.046 -2.098 2.145 sum -14.889 10.303 -19.403 26.539 Atomic orbital electron populations 1.21887 0.97330 0.98919 1.01965 1.22254 0.93837 0.99607 1.01308 1.19158 0.95514 0.88424 0.82525 0.93695 1.22063 0.89491 1.48274 1.05932 0.92015 1.25660 0.96553 0.92189 1.02005 1.70833 1.09792 1.41918 1.30287 0.84213 0.76365 0.77487 0.75765 1.20982 1.19051 1.20966 1.46236 1.14640 1.54935 1.18245 1.18094 0.82883 0.79422 0.86939 1.90752 1.52893 1.60244 1.38361 1.20443 0.95515 1.00746 0.95036 1.21267 0.99457 0.97046 0.91582 1.20961 0.93951 1.00688 0.99111 1.17733 0.93709 0.99099 0.85107 1.44619 1.63027 1.13549 0.97234 1.45592 1.75796 1.09286 0.95900 1.20652 0.75739 0.90780 0.81808 1.90868 1.49703 1.70707 1.27985 1.21803 1.03350 0.91437 1.01541 1.21791 1.01819 1.03348 0.90600 1.20821 0.76976 0.79125 0.92335 1.90868 1.52307 1.62220 1.31415 1.20982 0.99245 0.99385 0.92615 1.21188 0.95222 0.93264 0.97191 0.92766 0.93459 0.95058 0.93096 0.91891 0.91990 0.77434 0.84491 0.85037 0.72922 0.86021 0.87024 0.86958 0.85870 0.84874 0.83657 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.83 8.49 37.16 0.32 -2.52 16 2 C -0.13 -2.85 4.98 -26.73 -0.13 -2.98 16 3 C 0.25 5.72 1.80 -69.08 -0.12 5.60 16 4 H 0.05 1.14 6.15 -51.93 -0.32 0.82 16 5 C -0.62 -16.29 9.01 -34.44 -0.31 -16.60 16 6 H 0.06 1.69 7.96 -52.49 -0.42 1.27 16 7 C 0.04 1.18 5.31 -17.82 -0.09 1.09 16 8 N -0.90 -26.24 13.70 55.43 0.76 -25.48 16 9 Si 1.03 24.57 26.23 -169.99 -4.46 20.11 16 10 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 11 H -0.27 -5.93 5.62 56.52 0.32 -5.62 16 12 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 13 N -0.69 -13.44 4.96 -55.95 -0.28 -13.72 16 14 C 0.54 10.00 6.27 -12.44 -0.08 9.92 16 15 O -0.54 -11.56 13.46 5.30 0.07 -11.49 16 16 C -0.11 -1.64 5.88 -104.95 -0.62 -2.26 16 17 C -0.07 -0.88 9.53 -39.22 -0.37 -1.25 16 18 C -0.13 -1.28 9.72 -39.46 -0.38 -1.66 16 19 C 0.13 1.40 5.53 -83.74 -0.46 0.93 16 20 N -0.36 -3.08 3.55 -9.91 -0.04 -3.12 16 21 N -0.51 -3.58 6.03 31.15 0.19 -3.39 16 22 C 0.52 3.73 7.80 -11.16 -0.09 3.64 16 23 O -0.52 -5.54 17.92 5.56 0.10 -5.44 16 24 C -0.14 -0.54 6.15 -27.95 -0.17 -0.71 16 25 C -0.14 -0.55 6.15 -27.95 -0.17 -0.72 16 26 C 0.52 4.42 7.29 -11.08 -0.08 4.33 16 27 O -0.50 -6.07 15.75 5.56 0.09 -5.98 16 28 C -0.10 -1.15 8.69 -39.46 -0.34 -1.50 16 29 C -0.05 -0.64 9.58 -39.23 -0.38 -1.02 16 30 H 0.05 1.13 7.77 -51.93 -0.40 0.72 16 31 H 0.05 0.92 5.68 -51.93 -0.29 0.62 16 32 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 34 H 0.06 1.41 5.19 -51.93 -0.27 1.14 16 35 H 0.27 7.81 8.73 -40.82 -0.36 7.45 16 36 H 0.39 6.69 6.55 -40.82 -0.27 6.42 16 37 H 0.14 1.46 6.39 -52.49 -0.34 1.13 16 38 H 0.13 1.06 8.06 -52.48 -0.42 0.64 16 39 H 0.43 2.64 8.83 -182.71 -1.61 1.03 16 40 H 0.12 0.26 8.14 -51.93 -0.42 -0.16 16 41 H 0.11 0.33 8.14 -51.93 -0.42 -0.09 16 42 H 0.11 0.29 8.14 -51.93 -0.42 -0.13 16 43 H 0.12 0.32 8.14 -51.93 -0.42 -0.10 16 44 H 0.13 1.39 7.52 -52.49 -0.39 0.99 16 45 H 0.15 1.91 7.64 -52.48 -0.40 1.50 16 LS Contribution 368.92 15.07 5.56 5.56 Total: -1.00 -34.36 368.92 -8.41 -42.77 By element: Atomic # 1 Polarization: 12.79 SS G_CDS: -6.91 Total: 5.88 kcal Atomic # 6 Polarization: -2.20 SS G_CDS: -3.49 Total: -5.70 kcal Atomic # 7 Polarization: -46.34 SS G_CDS: 0.63 Total: -45.71 kcal Atomic # 8 Polarization: -23.18 SS G_CDS: 0.26 Total: -22.92 kcal Atomic # 14 Polarization: 24.57 SS G_CDS: -4.46 Total: 20.11 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -34.36 -8.41 -42.77 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273891826.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.033 kcal (2) G-P(sol) polarization free energy of solvation -34.359 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.326 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.769 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.736 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds