Wall clock time and date at job start Wed Apr 1 2020 03:40:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53008 * 109.46836 * 2 1 4 4 H 1.09004 * 109.46859 * 56.31334 * 3 2 1 5 5 C 1.50702 * 109.46844 * 176.30703 * 3 2 1 6 6 H 1.07999 * 119.99514 * 114.80902 * 5 3 2 7 7 C 1.37873 * 120.00204 * 294.80593 * 5 3 2 8 8 N 1.31518 * 119.99820 * 162.48608 * 7 5 3 9 9 Si 1.86803 * 120.00085 * 342.48210 * 7 5 3 10 10 H 1.48507 * 109.46927 * 270.00195 * 9 7 5 11 11 H 1.48496 * 109.47121 * 30.00208 * 9 7 5 12 12 H 1.48495 * 109.46902 * 150.00273 * 9 7 5 13 13 N 1.46496 * 109.47320 * 296.31229 * 3 2 1 14 14 C 1.34780 * 120.00095 * 84.99839 * 13 3 2 15 15 O 1.21579 * 119.99601 * 359.97438 * 14 13 3 16 16 C 1.47593 * 119.99859 * 180.02562 * 14 13 3 17 17 C 1.39749 * 120.07438 * 359.72282 * 16 14 13 18 18 C 1.37670 * 119.92399 * 179.74586 * 17 16 14 19 19 C 1.39125 * 120.07471 * 0.50753 * 18 17 16 20 20 N 1.39440 * 119.92570 * 179.74415 * 19 18 17 21 21 N 1.39945 * 119.77388 * 50.49624 * 20 19 18 22 22 C 1.34474 * 120.58238 * 198.50721 * 21 20 19 23 23 O 1.21283 * 119.89935 * 180.49356 * 22 21 20 24 24 C 1.50629 * 120.24501 * 0.76148 * 22 21 20 25 25 C 1.52945 * 109.57519 * 325.48984 * 24 22 21 26 26 C 1.34647 * 119.76955 * 230.76731 * 20 19 18 27 27 O 1.21279 * 119.85433 * 0.20729 * 26 20 19 28 28 C 1.39133 * 120.15024 * 359.77119 * 19 18 17 29 29 C 1.37664 * 120.06970 * 359.96987 * 28 19 18 30 30 H 1.09004 * 109.46817 * 299.99358 * 1 2 3 31 31 H 1.08995 * 109.47361 * 59.99807 * 1 2 3 32 32 H 1.08999 * 109.46712 * 180.02562 * 1 2 3 33 33 H 1.09000 * 109.47499 * 240.00858 * 2 1 3 34 34 H 1.09000 * 109.47829 * 120.00244 * 2 1 3 35 35 H 0.97002 * 119.99835 * 354.90845 * 8 7 5 36 36 H 0.97001 * 119.99489 * 264.99979 * 13 3 2 37 37 H 1.08002 * 120.03761 * 0.02562 * 17 16 14 38 38 H 1.08007 * 119.96210 * 180.25426 * 18 17 16 39 39 H 0.97006 * 119.76253 * 18.77769 * 21 20 19 40 40 H 1.08999 * 109.45312 * 205.45708 * 24 22 21 41 41 H 1.09000 * 109.45568 * 85.52185 * 24 22 21 42 42 H 1.08995 * 109.45543 * 288.12051 * 25 24 22 43 43 H 1.08997 * 109.45313 * 168.18164 * 25 24 22 44 44 H 1.07992 * 119.96697 * 180.02562 * 28 19 18 45 45 H 1.08007 * 120.03928 * 179.97438 * 29 28 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6236 1.9751 0.8551 5 6 3.5442 1.4436 0.0915 6 1 4.1349 1.8181 -0.7314 7 6 4.1662 0.9665 1.2257 8 7 5.4404 0.6426 1.1900 9 14 3.1992 0.7802 2.8131 10 1 3.2856 2.0391 3.5960 11 1 1.7776 0.4913 2.4956 12 1 3.7656 -0.3379 3.6094 13 7 1.6255 2.1071 -1.2381 14 6 0.4060 2.6747 -1.3226 15 8 -0.3503 2.6348 -0.3715 16 6 -0.0117 3.3437 -2.5701 17 6 0.8582 3.3945 -3.6627 18 6 0.4634 4.0147 -4.8266 19 6 -0.7960 4.5997 -4.9124 20 7 -1.1906 5.2317 -6.0910 21 7 -1.0602 4.5648 -7.3144 22 6 -1.0747 5.2494 -8.4718 23 8 -0.9697 4.6580 -9.5254 24 6 -1.2147 6.7492 -8.4645 25 6 -2.1241 7.1733 -7.3102 26 6 -1.6894 6.4815 -6.0448 27 8 -1.7895 7.0525 -4.9795 28 6 -1.6624 4.5560 -3.8246 29 6 -1.2759 3.9328 -2.6596 30 1 -0.3633 0.5138 0.8901 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 1.8934 -0.5137 -0.8900 34 1 1.8934 -0.5138 0.8899 35 1 5.9241 0.6689 0.3497 36 1 2.2288 2.1385 -1.9970 37 1 1.8374 2.9438 -3.5955 38 1 1.1337 4.0507 -5.6728 39 1 -0.9625 3.5998 -7.3288 40 1 -1.6492 7.0778 -9.4086 41 1 -0.2325 7.2049 -8.3391 42 1 -3.1536 6.8980 -7.5391 43 1 -2.0590 8.2528 -7.1745 44 1 -2.6394 5.0107 -3.8946 45 1 -1.9487 3.8995 -1.8153 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273891826.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:40:45 Heat of formation + Delta-G solvation = -63.464798 kcal Electronic energy + Delta-G solvation = -29679.134337 eV Core-core repulsion = 25469.013901 eV Total energy + Delta-G solvation = -4210.120436 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.56160 -41.24725 -40.31492 -39.37746 -37.57668 -37.03147 -34.82148 -34.48932 -33.50329 -32.70821 -32.14703 -30.55110 -29.02555 -26.78769 -25.35893 -24.49605 -23.90527 -23.36561 -22.22748 -21.28780 -20.11097 -20.03057 -19.67765 -18.77817 -18.50029 -18.08319 -17.37803 -16.83419 -16.54940 -16.16924 -16.08018 -15.87393 -15.60977 -15.45075 -15.41729 -14.96471 -14.67841 -14.54395 -14.46964 -14.23267 -13.92832 -13.82935 -13.73826 -13.56649 -13.44178 -12.77220 -12.68189 -12.50831 -12.48198 -12.32479 -12.14622 -11.76919 -11.42704 -11.32417 -11.27271 -11.11812 -10.88633 -10.52820 -10.52178 -10.19762 -9.84789 -9.28087 -8.79559 -6.44121 -0.51562 0.19897 0.45915 0.95414 1.42453 1.48529 1.49137 1.70473 1.78782 2.28219 2.37836 2.43484 2.73669 2.99864 3.34394 3.56875 3.64127 3.67232 3.75493 3.79655 4.10306 4.12577 4.17637 4.29641 4.32490 4.39573 4.53715 4.69651 4.74191 4.76112 4.81810 4.86092 5.01290 5.04186 5.08677 5.14598 5.19662 5.23291 5.31235 5.46192 5.54501 5.62285 5.67487 5.72030 6.01676 6.24946 6.49860 6.52383 6.78838 6.97357 7.25878 7.37574 8.59016 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.021592 B = 0.002266 C = 0.002199 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1296.470395 B =12354.269558 C =12730.246820 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.129 4.129 3 C 0.251 3.749 4 H 0.025 0.975 5 C -0.614 4.614 6 H 0.042 0.958 7 C -0.001 4.001 8 N -0.927 5.927 9 Si 1.068 2.932 10 H -0.278 1.278 11 H -0.247 1.247 12 H -0.280 1.280 13 N -0.695 5.695 14 C 0.543 3.457 15 O -0.575 6.575 16 C -0.137 4.137 17 C -0.068 4.068 18 C -0.119 4.119 19 C 0.144 3.856 20 N -0.363 5.363 21 N -0.508 5.508 22 C 0.525 3.475 23 O -0.557 6.557 24 C -0.134 4.134 25 C -0.125 4.125 26 C 0.514 3.486 27 O -0.538 6.538 28 C -0.103 4.103 29 C -0.052 4.052 30 H 0.040 0.960 31 H 0.046 0.954 32 H 0.056 0.944 33 H 0.055 0.945 34 H 0.054 0.946 35 H 0.260 0.740 36 H 0.402 0.598 37 H 0.147 0.853 38 H 0.157 0.843 39 H 0.429 0.571 40 H 0.145 0.855 41 H 0.125 0.875 42 H 0.132 0.868 43 H 0.144 0.856 44 H 0.141 0.859 45 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.568 11.614 -21.778 29.727 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.168 4.168 3 C 0.146 3.854 4 H 0.043 0.957 5 C -0.651 4.651 6 H 0.060 0.940 7 C -0.202 4.202 8 N -0.562 5.562 9 Si 0.890 3.110 10 H -0.204 1.204 11 H -0.171 1.171 12 H -0.206 1.206 13 N -0.344 5.344 14 C 0.331 3.669 15 O -0.457 6.457 16 C -0.141 4.141 17 C -0.088 4.088 18 C -0.139 4.139 19 C 0.052 3.948 20 N -0.183 5.183 21 N -0.260 5.260 22 C 0.314 3.686 23 O -0.432 6.432 24 C -0.173 4.173 25 C -0.164 4.164 26 C 0.305 3.695 27 O -0.411 6.411 28 C -0.124 4.124 29 C -0.071 4.071 30 H 0.059 0.941 31 H 0.065 0.935 32 H 0.075 0.925 33 H 0.074 0.926 34 H 0.073 0.927 35 H 0.069 0.931 36 H 0.238 0.762 37 H 0.165 0.835 38 H 0.175 0.825 39 H 0.274 0.726 40 H 0.163 0.837 41 H 0.143 0.857 42 H 0.150 0.850 43 H 0.162 0.838 44 H 0.159 0.841 45 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -16.962 11.431 -19.587 28.320 hybrid contribution 0.926 -0.289 -1.561 1.838 sum -16.036 11.142 -21.149 28.785 Atomic orbital electron populations 1.21760 0.95570 1.00375 1.01314 1.22162 0.95330 0.98187 1.01153 1.18854 0.93265 0.89616 0.83621 0.95720 1.22239 0.91283 1.46678 1.04947 0.93995 1.26747 0.96647 0.91945 1.04892 1.70929 1.10891 1.44552 1.29817 0.83784 0.76382 0.77751 0.73082 1.20447 1.17105 1.20568 1.46037 1.15571 1.55350 1.17450 1.18590 0.81866 0.78529 0.87905 1.90724 1.53630 1.61407 1.39964 1.20110 0.96890 1.02908 0.94159 1.21364 0.99365 0.96728 0.91305 1.21150 0.94086 0.99562 0.99107 1.17860 0.93494 0.97824 0.85648 1.44672 1.62718 1.13705 0.97173 1.45624 1.75579 1.09500 0.95293 1.21250 0.74430 0.92023 0.80914 1.90864 1.51461 1.71743 1.29096 1.21883 1.04293 0.88651 1.02480 1.21879 1.02641 1.03909 0.87957 1.21748 0.75725 0.78652 0.93342 1.90859 1.53899 1.63042 1.33298 1.21022 0.99839 0.99166 0.92342 1.21148 0.94717 0.93540 0.97736 0.94098 0.93454 0.92459 0.92610 0.92703 0.93077 0.76221 0.83534 0.82522 0.72634 0.83712 0.85703 0.84967 0.83842 0.84082 0.84380 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.09 8.49 71.98 0.61 -4.48 16 2 C -0.13 -5.54 4.98 30.60 0.15 -5.38 16 3 C 0.25 11.68 1.80 44.25 0.08 11.76 16 4 H 0.02 1.27 6.15 -2.38 -0.01 1.25 16 5 C -0.61 -32.76 9.01 25.60 0.23 -32.53 16 6 H 0.04 2.36 7.96 -2.91 -0.02 2.33 16 7 C 0.00 -0.06 5.31 84.65 0.45 0.39 16 8 N -0.93 -55.44 13.70 21.45 0.29 -55.14 16 9 Si 1.07 49.85 26.23 68.60 1.80 51.65 16 10 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 11 H -0.25 -10.71 5.62 99.48 0.56 -10.15 16 12 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 13 N -0.70 -27.05 4.96 -449.20 -2.23 -29.28 16 14 C 0.54 20.16 6.27 86.71 0.54 20.70 16 15 O -0.58 -24.84 13.46 -3.96 -0.05 -24.89 16 16 C -0.14 -3.91 5.88 -20.08 -0.12 -4.03 16 17 C -0.07 -1.52 9.53 22.50 0.21 -1.31 16 18 C -0.12 -2.13 9.72 22.35 0.22 -1.91 16 19 C 0.14 2.70 5.53 38.36 0.21 2.91 16 20 N -0.36 -5.27 3.55 -303.73 -1.08 -6.34 16 21 N -0.51 -5.80 6.03 -173.93 -1.05 -6.85 16 22 C 0.52 6.04 7.80 87.68 0.68 6.72 16 23 O -0.56 -10.75 17.92 -3.04 -0.05 -10.80 16 24 C -0.13 -0.50 6.15 29.81 0.18 -0.32 16 25 C -0.12 -0.53 6.15 29.81 0.18 -0.35 16 26 C 0.51 7.42 7.29 87.65 0.64 8.06 16 27 O -0.54 -12.19 15.75 -3.03 -0.05 -12.24 16 28 C -0.10 -2.23 8.69 22.35 0.19 -2.03 16 29 C -0.05 -1.34 9.58 22.50 0.22 -1.13 16 30 H 0.04 1.66 7.77 -2.38 -0.02 1.64 16 31 H 0.05 1.79 5.68 -2.39 -0.01 1.78 16 32 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 33 H 0.06 2.30 8.14 -2.39 -0.02 2.28 16 34 H 0.05 2.42 5.19 -2.39 -0.01 2.40 16 35 H 0.26 15.51 8.73 -92.71 -0.81 14.70 16 36 H 0.40 13.71 6.55 -92.71 -0.61 13.10 16 37 H 0.15 2.93 6.39 -2.91 -0.02 2.91 16 38 H 0.16 2.03 8.06 -2.91 -0.02 2.00 16 39 H 0.43 4.38 8.83 -213.41 -1.88 2.49 16 40 H 0.14 -0.02 8.14 -2.39 -0.02 -0.04 16 41 H 0.12 0.23 8.14 -2.39 -0.02 0.21 16 42 H 0.13 0.13 8.14 -2.39 -0.02 0.11 16 43 H 0.14 0.15 8.14 -2.39 -0.02 0.13 16 44 H 0.14 2.80 7.52 -2.91 -0.02 2.77 16 45 H 0.14 3.71 7.64 -2.91 -0.02 3.69 16 Total: -1.00 -76.14 368.92 0.66 -75.48 By element: Atomic # 1 Polarization: 22.96 SS G_CDS: -1.61 Total: 21.35 kcal Atomic # 6 Polarization: -7.62 SS G_CDS: 4.69 Total: -2.93 kcal Atomic # 7 Polarization: -93.55 SS G_CDS: -4.06 Total: -97.62 kcal Atomic # 8 Polarization: -47.77 SS G_CDS: -0.16 Total: -47.93 kcal Atomic # 14 Polarization: 49.85 SS G_CDS: 1.80 Total: 51.65 kcal Total: -76.14 0.66 -75.48 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273891826.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.011 kcal (2) G-P(sol) polarization free energy of solvation -76.139 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.128 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.663 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.475 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.465 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds