Wall clock time and date at job start Wed Apr 1 2020 04:04:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47008 * 2 1 4 4 N 1.46501 * 109.46918 * 119.99878 * 2 1 3 5 5 C 1.34771 * 119.99633 * 155.00070 * 4 2 1 6 6 O 1.21279 * 120.00227 * 0.02562 * 5 4 2 7 7 C 1.50708 * 119.99931 * 180.02562 * 5 4 2 8 8 C 1.50698 * 109.46957 * 180.02562 * 7 5 4 9 9 N 1.29946 * 126.29078 * 270.02285 * 8 7 5 10 10 O 1.21294 * 110.25316 * 179.69027 * 9 8 7 11 11 C 1.33644 * 109.81241 * 0.46569 * 10 9 8 12 12 C 1.50697 * 126.55144 * 179.80481 * 11 10 9 13 13 C 1.50703 * 109.47047 * 269.68678 * 12 11 10 14 14 C 1.38306 * 119.92975 * 270.29820 * 13 12 11 15 15 C 1.38104 * 120.06267 * 180.29756 * 14 13 12 16 16 C 1.38874 * 119.93265 * 359.43007 * 15 14 13 17 17 O 1.35749 * 120.06890 * 180.29770 * 16 15 14 18 18 C 1.34834 * 117.00013 * 354.46142 * 17 16 15 19 19 H 1.07996 * 120.00021 * 5.05939 * 18 17 16 20 20 C 1.38654 * 119.99707 * 185.05824 * 18 17 16 21 21 N 1.31550 * 120.00182 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 119.99577 * 180.02562 * 20 18 17 23 23 H 1.48499 * 109.47369 * 59.99976 * 22 20 18 24 24 H 1.48494 * 109.47142 * 180.02562 * 22 20 18 25 25 H 1.48500 * 109.47275 * 300.00018 * 22 20 18 26 26 C 1.38882 * 119.86301 * 0.27303 * 16 15 14 27 27 C 1.38094 * 119.92975 * 0.02562 * 26 16 15 28 28 N 1.31134 * 106.89693 * 359.54119 * 11 10 9 29 29 H 1.08997 * 109.47284 * 299.99836 * 1 2 3 30 30 H 1.09006 * 109.47295 * 60.00207 * 1 2 3 31 31 H 1.09004 * 109.47456 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.47284 * 240.00164 * 2 1 3 33 33 H 1.08996 * 109.47093 * 179.97438 * 3 2 1 34 34 H 1.09003 * 109.47336 * 300.00315 * 3 2 1 35 35 H 1.09006 * 109.47149 * 60.00093 * 3 2 1 36 36 H 0.96998 * 120.00164 * 335.00706 * 4 2 1 37 37 H 1.08997 * 109.46944 * 60.00022 * 7 5 4 38 38 H 1.08997 * 109.46795 * 300.00097 * 7 5 4 39 39 H 1.09007 * 109.47286 * 149.68898 * 12 11 10 40 40 H 1.08998 * 109.47397 * 29.68942 * 12 11 10 41 41 H 1.07990 * 119.96779 * 0.02562 * 14 13 12 42 42 H 1.08000 * 120.02708 * 179.69965 * 15 14 13 43 43 H 0.97006 * 119.99724 * 179.97438 * 21 20 18 44 44 H 1.08005 * 120.03486 * 180.02562 * 26 16 15 45 45 H 1.08006 * 119.96521 * 180.02562 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 3.2402 -1.2591 1.1944 6 8 3.9357 -1.1986 0.2027 7 6 3.7423 -1.9701 2.4247 8 6 5.1241 -2.5116 2.1631 9 7 5.4125 -3.6836 1.6817 10 8 6.6145 -3.8137 1.5849 11 6 7.2262 -2.7070 2.0178 12 6 8.7127 -2.4645 2.0683 13 6 9.2499 -2.9145 3.4025 14 6 9.2963 -2.0273 4.4625 15 6 9.7938 -2.4349 5.6846 16 6 10.2367 -3.7405 5.8519 17 8 10.7207 -4.1458 7.0537 18 6 10.8517 -3.2043 8.0099 19 1 10.5008 -2.1990 7.8296 20 6 11.4370 -3.5268 9.2248 21 7 11.8641 -4.7515 9.4446 22 14 11.6179 -2.2226 10.5498 23 1 10.2763 -1.7072 10.9235 24 1 12.2706 -2.8172 11.7438 25 1 12.4512 -1.1063 10.0352 26 6 10.1831 -4.6307 4.7873 27 6 9.6903 -4.2153 3.5660 28 7 6.2855 -1.8703 2.3847 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 3.1299 1.4425 0.0005 34 1 1.6766 1.9564 -0.8900 35 1 1.6766 1.9564 0.8900 36 1 1.4621 -0.7387 1.9894 37 1 3.0698 -2.7922 2.6692 38 1 3.7788 -1.2700 3.2593 39 1 8.9120 -1.4010 1.9363 40 1 9.1999 -3.0271 1.2720 41 1 8.9473 -1.0135 4.3331 42 1 9.8343 -1.7403 6.5106 43 1 12.2739 -4.9770 10.2944 44 1 10.5264 -5.6468 4.9144 45 1 9.6479 -4.9072 2.7377 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000277856085.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:04:33 Heat of formation + Delta-G solvation = 19.306487 kcal Electronic energy + Delta-G solvation = -28440.532052 eV Core-core repulsion = 24234.000848 eV Total energy + Delta-G solvation = -4206.531204 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -45.43870 -40.17757 -39.14469 -36.95463 -36.56562 -35.70326 -33.85581 -32.46455 -32.20325 -30.72781 -30.24616 -29.46396 -27.68749 -26.68649 -25.21066 -23.83158 -22.66268 -22.04897 -21.45175 -20.87934 -20.35761 -18.21550 -18.04743 -17.45042 -17.24226 -16.99058 -16.56286 -15.69919 -15.11275 -14.85425 -14.71984 -14.52794 -14.46381 -14.30326 -13.97934 -13.67221 -13.60310 -13.42697 -13.00240 -12.79575 -12.77234 -12.73687 -12.52606 -12.34493 -11.90612 -11.84092 -11.61359 -11.53492 -11.42318 -11.32038 -11.06902 -10.92891 -10.81401 -10.71127 -10.48831 -10.26033 -9.71129 -9.53786 -9.40398 -8.89128 -8.25740 -7.29988 -6.51164 -4.09937 1.27347 2.05923 2.16180 2.25780 2.27050 2.81993 3.03925 3.10176 3.12707 3.14007 3.60911 3.91944 4.01918 4.28440 4.47138 4.50891 4.58491 4.77004 4.81999 4.91584 5.02727 5.10237 5.16044 5.20742 5.24475 5.26911 5.31695 5.35304 5.45690 5.59806 5.63831 5.72221 5.76978 5.82663 5.86156 6.07485 6.09145 6.14806 6.35003 6.61464 6.82670 6.97686 7.04972 7.14844 7.27693 7.37072 7.73163 7.83057 7.93516 8.27748 8.94036 9.62391 10.66260 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.016473 B = 0.001902 C = 0.001783 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1699.292617 B =14720.956606 C =15700.002975 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.136 3.864 3 C -0.165 4.165 4 N -0.727 5.727 5 C 0.523 3.477 6 O -0.526 6.526 7 C -0.049 4.049 8 C 0.183 3.817 9 N -0.381 5.381 10 O 0.078 5.922 11 C 0.206 3.794 12 C 0.031 3.969 13 C -0.203 4.203 14 C -0.048 4.048 15 C -0.237 4.237 16 C 0.160 3.840 17 O -0.173 6.173 18 C -0.393 4.393 19 H 0.093 0.907 20 C 0.040 3.960 21 N -0.860 5.860 22 Si 0.942 3.058 23 H -0.270 1.270 24 H -0.277 1.277 25 H -0.269 1.269 26 C -0.194 4.194 27 C -0.058 4.058 28 N -0.478 5.478 29 H 0.062 0.938 30 H 0.073 0.927 31 H 0.062 0.938 32 H 0.088 0.912 33 H 0.062 0.938 34 H 0.065 0.935 35 H 0.057 0.943 36 H 0.402 0.598 37 H 0.121 0.879 38 H 0.126 0.874 39 H 0.110 0.890 40 H 0.102 0.898 41 H 0.111 0.889 42 H 0.128 0.872 43 H 0.272 0.728 44 H 0.119 0.881 45 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.943 9.186 -15.634 26.222 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.032 3.968 3 C -0.223 4.223 4 N -0.381 5.381 5 C 0.308 3.692 6 O -0.401 6.401 7 C -0.090 4.090 8 C -0.091 4.091 9 N -0.089 5.089 10 O 0.019 5.981 11 C -0.014 4.014 12 C -0.008 4.008 13 C -0.205 4.205 14 C -0.066 4.066 15 C -0.256 4.256 16 C 0.105 3.895 17 O -0.076 6.076 18 C -0.469 4.469 19 H 0.110 0.890 20 C -0.165 4.165 21 N -0.494 5.494 22 Si 0.766 3.234 23 H -0.195 1.195 24 H -0.202 1.202 25 H -0.194 1.194 26 C -0.213 4.213 27 C -0.076 4.076 28 N -0.212 5.212 29 H 0.081 0.919 30 H 0.092 0.908 31 H 0.081 0.919 32 H 0.106 0.894 33 H 0.081 0.919 34 H 0.084 0.916 35 H 0.076 0.924 36 H 0.236 0.764 37 H 0.139 0.861 38 H 0.144 0.856 39 H 0.128 0.872 40 H 0.121 0.879 41 H 0.129 0.871 42 H 0.146 0.854 43 H 0.081 0.919 44 H 0.137 0.863 45 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -19.028 8.661 -16.129 26.405 hybrid contribution -0.140 0.677 1.189 1.375 sum -19.168 9.338 -14.940 26.035 Atomic orbital electron populations 1.22079 0.93935 1.02718 1.03066 1.20955 0.94011 0.93135 0.88692 1.22193 1.02355 0.95601 1.02150 1.46025 1.17668 1.57248 1.17119 1.20235 0.81404 0.78483 0.89128 1.90749 1.55777 1.58828 1.34775 1.19830 0.89010 1.01909 0.98276 1.24686 0.96230 0.88361 0.99789 1.74527 0.93783 1.20348 1.20208 1.85259 1.13131 1.38610 1.61061 1.29054 0.99474 0.81339 0.91528 1.18978 0.79964 1.04042 0.97776 1.18816 1.11867 0.95618 0.94196 1.20640 0.95866 0.98138 0.91990 1.21146 1.08673 0.97169 0.98597 1.19450 0.91240 0.92141 0.86629 1.83977 1.70509 1.36576 1.16515 1.21311 1.41081 0.91847 0.92711 0.88968 1.25312 0.95803 0.97579 0.97758 1.70028 1.36544 1.18043 1.24750 0.85768 0.79000 0.79424 0.79194 1.19459 1.20223 1.19401 1.20194 1.09400 0.99918 0.91812 1.20545 0.96493 0.94394 0.96200 1.71810 0.97464 1.29809 1.22090 0.91929 0.90826 0.91903 0.89437 0.91939 0.91578 0.92355 0.76412 0.86143 0.85573 0.87199 0.87939 0.87060 0.85387 0.91850 0.86271 0.86608 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.64 9.38 37.16 0.35 -0.29 16 2 C 0.14 0.92 3.18 -67.93 -0.22 0.70 16 3 C -0.16 -1.12 9.48 37.16 0.35 -0.76 16 4 N -0.73 -5.04 5.08 -53.81 -0.27 -5.32 16 5 C 0.52 5.65 7.79 -10.98 -0.09 5.56 16 6 O -0.53 -8.12 15.70 5.56 0.09 -8.03 16 7 C -0.05 -0.48 6.33 -29.03 -0.18 -0.67 16 8 C 0.18 2.70 6.71 -156.37 -1.05 1.65 16 9 N -0.38 -6.10 12.16 30.90 0.38 -5.72 16 10 O 0.08 1.23 11.31 18.10 0.20 1.43 16 11 C 0.21 3.07 7.75 -13.06 -0.10 2.97 16 12 C 0.03 0.39 5.97 -29.04 -0.17 0.22 16 13 C -0.20 -3.26 5.12 -104.57 -0.54 -3.79 16 14 C -0.05 -0.85 9.69 -39.61 -0.38 -1.23 16 15 C -0.24 -5.00 9.17 -39.40 -0.36 -5.36 16 16 C 0.16 3.77 6.65 -39.11 -0.26 3.51 16 17 O -0.17 -4.85 9.76 0.04 0.00 -4.85 16 18 C -0.39 -10.78 9.49 30.89 0.29 -10.49 16 19 H 0.09 2.33 5.20 -52.49 -0.27 2.05 16 20 C 0.04 1.09 5.49 -17.52 -0.10 0.99 16 21 N -0.86 -24.79 13.67 55.48 0.76 -24.03 16 22 Si 0.94 20.13 29.55 -169.99 -5.02 15.11 16 23 H -0.27 -5.59 7.11 56.52 0.40 -5.19 16 24 H -0.28 -5.80 7.11 56.52 0.40 -5.40 16 25 H -0.27 -5.57 7.11 56.52 0.40 -5.16 16 26 C -0.19 -3.96 9.99 -39.40 -0.39 -4.35 16 27 C -0.06 -0.98 9.69 -39.61 -0.38 -1.36 16 28 N -0.48 -7.56 11.55 -9.87 -0.11 -7.68 16 29 H 0.06 0.19 8.14 -51.93 -0.42 -0.23 16 30 H 0.07 0.24 8.14 -51.93 -0.42 -0.18 16 31 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 32 H 0.09 0.77 7.58 -51.93 -0.39 0.38 16 33 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 34 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 35 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 36 H 0.40 1.50 8.60 -40.82 -0.35 1.15 16 37 H 0.12 0.87 8.14 -51.93 -0.42 0.45 16 38 H 0.13 0.96 8.14 -51.93 -0.42 0.54 16 39 H 0.11 1.22 8.09 -51.93 -0.42 0.80 16 40 H 0.10 1.01 8.08 -51.93 -0.42 0.59 16 41 H 0.11 1.73 8.06 -52.49 -0.42 1.30 16 42 H 0.13 2.71 5.64 -52.49 -0.30 2.42 16 43 H 0.27 7.19 8.31 -40.82 -0.34 6.85 16 44 H 0.12 2.35 8.06 -52.48 -0.42 1.93 16 45 H 0.12 1.59 8.06 -52.48 -0.42 1.17 16 LS Contribution 392.79 15.07 5.92 5.92 Total: -1.00 -35.31 392.79 -7.23 -42.55 By element: Atomic # 1 Polarization: 9.24 SS G_CDS: -5.94 Total: 3.30 kcal Atomic # 6 Polarization: -9.46 SS G_CDS: -3.23 Total: -12.69 kcal Atomic # 7 Polarization: -43.49 SS G_CDS: 0.75 Total: -42.74 kcal Atomic # 8 Polarization: -11.74 SS G_CDS: 0.29 Total: -11.45 kcal Atomic # 14 Polarization: 20.13 SS G_CDS: -5.02 Total: 15.11 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -35.31 -7.23 -42.55 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000277856085.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.854 kcal (2) G-P(sol) polarization free energy of solvation -35.315 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.540 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.233 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.548 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.306 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds