Wall clock time and date at job start Wed Apr 1 2020 04:04:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47008 * 2 1 4 4 N 1.46501 * 109.46918 * 119.99878 * 2 1 3 5 5 C 1.34771 * 119.99633 * 155.00070 * 4 2 1 6 6 O 1.21279 * 120.00227 * 0.02562 * 5 4 2 7 7 C 1.50708 * 119.99931 * 180.02562 * 5 4 2 8 8 C 1.50698 * 109.46957 * 180.02562 * 7 5 4 9 9 N 1.29946 * 126.29078 * 270.02285 * 8 7 5 10 10 O 1.21294 * 110.25316 * 179.69027 * 9 8 7 11 11 C 1.33644 * 109.81241 * 0.46569 * 10 9 8 12 12 C 1.50697 * 126.55144 * 179.80481 * 11 10 9 13 13 C 1.50703 * 109.47047 * 269.68678 * 12 11 10 14 14 C 1.38306 * 119.92975 * 270.29820 * 13 12 11 15 15 C 1.38104 * 120.06267 * 180.29756 * 14 13 12 16 16 C 1.38874 * 119.93265 * 359.43007 * 15 14 13 17 17 O 1.35749 * 120.06890 * 180.29770 * 16 15 14 18 18 C 1.34834 * 117.00013 * 354.46142 * 17 16 15 19 19 H 1.07996 * 120.00021 * 5.05939 * 18 17 16 20 20 C 1.38654 * 119.99707 * 185.05824 * 18 17 16 21 21 N 1.31550 * 120.00182 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 119.99577 * 180.02562 * 20 18 17 23 23 H 1.48499 * 109.47369 * 59.99976 * 22 20 18 24 24 H 1.48494 * 109.47142 * 180.02562 * 22 20 18 25 25 H 1.48500 * 109.47275 * 300.00018 * 22 20 18 26 26 C 1.38882 * 119.86301 * 0.27303 * 16 15 14 27 27 C 1.38094 * 119.92975 * 0.02562 * 26 16 15 28 28 N 1.31134 * 106.89693 * 359.54119 * 11 10 9 29 29 H 1.08997 * 109.47284 * 299.99836 * 1 2 3 30 30 H 1.09006 * 109.47295 * 60.00207 * 1 2 3 31 31 H 1.09004 * 109.47456 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.47284 * 240.00164 * 2 1 3 33 33 H 1.08996 * 109.47093 * 179.97438 * 3 2 1 34 34 H 1.09003 * 109.47336 * 300.00315 * 3 2 1 35 35 H 1.09006 * 109.47149 * 60.00093 * 3 2 1 36 36 H 0.96998 * 120.00164 * 335.00706 * 4 2 1 37 37 H 1.08997 * 109.46944 * 60.00022 * 7 5 4 38 38 H 1.08997 * 109.46795 * 300.00097 * 7 5 4 39 39 H 1.09007 * 109.47286 * 149.68898 * 12 11 10 40 40 H 1.08998 * 109.47397 * 29.68942 * 12 11 10 41 41 H 1.07990 * 119.96779 * 0.02562 * 14 13 12 42 42 H 1.08000 * 120.02708 * 179.69965 * 15 14 13 43 43 H 0.97006 * 119.99724 * 179.97438 * 21 20 18 44 44 H 1.08005 * 120.03486 * 180.02562 * 26 16 15 45 45 H 1.08006 * 119.96521 * 180.02562 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 3.2402 -1.2591 1.1944 6 8 3.9357 -1.1986 0.2027 7 6 3.7423 -1.9701 2.4247 8 6 5.1241 -2.5116 2.1631 9 7 5.4125 -3.6836 1.6817 10 8 6.6145 -3.8137 1.5849 11 6 7.2262 -2.7070 2.0178 12 6 8.7127 -2.4645 2.0683 13 6 9.2499 -2.9145 3.4025 14 6 9.2963 -2.0273 4.4625 15 6 9.7938 -2.4349 5.6846 16 6 10.2367 -3.7405 5.8519 17 8 10.7207 -4.1458 7.0537 18 6 10.8517 -3.2043 8.0099 19 1 10.5008 -2.1990 7.8296 20 6 11.4370 -3.5268 9.2248 21 7 11.8641 -4.7515 9.4446 22 14 11.6179 -2.2226 10.5498 23 1 10.2763 -1.7072 10.9235 24 1 12.2706 -2.8172 11.7438 25 1 12.4512 -1.1063 10.0352 26 6 10.1831 -4.6307 4.7873 27 6 9.6903 -4.2153 3.5660 28 7 6.2855 -1.8703 2.3847 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 3.1299 1.4425 0.0005 34 1 1.6766 1.9564 -0.8900 35 1 1.6766 1.9564 0.8900 36 1 1.4621 -0.7387 1.9894 37 1 3.0698 -2.7922 2.6692 38 1 3.7788 -1.2700 3.2593 39 1 8.9120 -1.4010 1.9363 40 1 9.1999 -3.0271 1.2720 41 1 8.9473 -1.0135 4.3331 42 1 9.8343 -1.7403 6.5106 43 1 12.2739 -4.9770 10.2944 44 1 10.5264 -5.6468 4.9144 45 1 9.6479 -4.9072 2.7377 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000277856085.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:04:32 Heat of formation + Delta-G solvation = -6.589453 kcal Electronic energy + Delta-G solvation = -28441.654984 eV Core-core repulsion = 24234.000848 eV Total energy + Delta-G solvation = -4207.654136 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -46.58251 -40.97509 -40.81409 -38.59360 -37.33408 -36.73828 -35.10863 -34.22962 -33.08378 -31.97873 -31.78471 -30.37486 -28.20066 -28.11983 -27.01450 -24.92782 -23.70319 -23.58824 -22.48609 -21.81586 -21.45148 -19.85865 -19.29932 -18.86572 -18.49189 -18.08869 -17.27801 -16.62010 -16.41566 -16.37521 -16.09938 -15.93060 -15.49472 -15.24091 -15.15386 -15.09732 -14.85673 -14.49207 -14.25370 -14.01196 -13.79714 -13.59326 -13.29364 -13.19305 -13.07198 -12.95557 -12.88788 -12.75050 -12.47231 -12.38814 -12.32632 -12.30886 -12.14472 -12.05939 -11.94729 -11.21834 -11.18632 -10.83041 -10.78458 -10.21484 -9.79347 -8.98973 -8.47658 -6.16003 0.12178 0.59259 0.60317 1.15237 1.35517 1.45618 1.47149 1.51611 1.91009 2.10136 2.17716 2.64371 2.83526 3.01890 3.18292 3.50456 3.65568 3.88538 3.93227 4.00068 4.04855 4.10564 4.19060 4.21711 4.29310 4.36825 4.49487 4.58042 4.67614 4.72093 4.73627 4.78463 4.82597 4.91538 4.97326 5.00557 5.07544 5.14887 5.24704 5.28645 5.30285 5.47666 5.54393 5.70445 5.73379 6.01981 6.18318 6.44332 6.96844 7.13823 7.14576 7.76333 8.74910 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.016473 B = 0.001902 C = 0.001783 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1699.292617 B =14720.956606 C =15700.002975 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.132 3.868 3 C -0.160 4.160 4 N -0.708 5.708 5 C 0.522 3.478 6 O -0.580 6.580 7 C -0.050 4.050 8 C 0.178 3.822 9 N -0.402 5.402 10 O 0.070 5.930 11 C 0.202 3.798 12 C 0.034 3.966 13 C -0.172 4.172 14 C -0.047 4.047 15 C -0.246 4.246 16 C 0.120 3.880 17 O -0.230 6.230 18 C -0.415 4.415 19 H 0.103 0.897 20 C -0.022 4.022 21 N -0.919 5.919 22 Si 1.018 2.982 23 H -0.258 1.258 24 H -0.272 1.272 25 H -0.257 1.257 26 C -0.207 4.207 27 C -0.049 4.049 28 N -0.497 5.497 29 H 0.078 0.922 30 H 0.082 0.918 31 H 0.064 0.936 32 H 0.062 0.938 33 H 0.030 0.970 34 H 0.078 0.922 35 H 0.072 0.928 36 H 0.420 0.580 37 H 0.148 0.852 38 H 0.151 0.849 39 H 0.133 0.867 40 H 0.140 0.860 41 H 0.140 0.860 42 H 0.119 0.881 43 H 0.273 0.727 44 H 0.116 0.884 45 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.263 11.347 -17.221 29.621 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.028 3.972 3 C -0.219 4.219 4 N -0.361 5.361 5 C 0.307 3.693 6 O -0.460 6.460 7 C -0.091 4.091 8 C -0.096 4.096 9 N -0.112 5.112 10 O 0.014 5.986 11 C -0.018 4.018 12 C -0.004 4.004 13 C -0.174 4.174 14 C -0.065 4.065 15 C -0.265 4.265 16 C 0.069 3.931 17 O -0.136 6.136 18 C -0.491 4.491 19 H 0.120 0.880 20 C -0.220 4.220 21 N -0.556 5.556 22 Si 0.837 3.163 23 H -0.182 1.182 24 H -0.197 1.197 25 H -0.181 1.181 26 C -0.226 4.226 27 C -0.067 4.067 28 N -0.230 5.230 29 H 0.097 0.903 30 H 0.101 0.899 31 H 0.083 0.917 32 H 0.080 0.920 33 H 0.050 0.950 34 H 0.097 0.903 35 H 0.091 0.909 36 H 0.258 0.742 37 H 0.166 0.834 38 H 0.169 0.831 39 H 0.151 0.849 40 H 0.158 0.842 41 H 0.158 0.842 42 H 0.137 0.863 43 H 0.082 0.918 44 H 0.134 0.866 45 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -21.410 10.845 -17.752 29.852 hybrid contribution 0.380 0.059 1.274 1.331 sum -21.030 10.904 -16.478 28.856 Atomic orbital electron populations 1.22025 0.91259 1.03281 1.04347 1.21038 0.95963 0.92642 0.87561 1.22155 1.00268 0.95909 1.03524 1.45924 1.16572 1.55654 1.17976 1.20421 0.81942 0.78297 0.88608 1.90728 1.57487 1.61130 1.36652 1.20109 0.87209 1.03307 0.98498 1.25472 0.97752 0.87893 0.98481 1.74516 0.94040 1.21337 1.21298 1.85226 1.13185 1.38880 1.61359 1.29376 1.00121 0.81138 0.91157 1.19193 0.78649 1.06197 0.96360 1.19241 1.08240 0.94653 0.95286 1.20977 0.94799 0.99867 0.90902 1.21240 1.09148 0.96174 0.99976 1.20020 0.92579 0.94039 0.86462 1.83945 1.73681 1.37712 1.18273 1.21789 1.41506 0.92441 0.93341 0.88022 1.26588 0.95232 1.00059 1.00086 1.70176 1.39150 1.20607 1.25695 0.84662 0.79529 0.76420 0.75721 1.18206 1.19653 1.18083 1.20475 1.09887 0.99654 0.92567 1.21008 0.94443 0.95526 0.95708 1.71826 0.98159 1.30424 1.22634 0.90279 0.89927 0.91700 0.92018 0.95039 0.90310 0.90926 0.74227 0.83379 0.83109 0.84869 0.84160 0.84216 0.86298 0.91810 0.86612 0.82512 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.79 9.38 71.98 0.68 -0.11 16 2 C 0.13 1.59 3.18 44.99 0.14 1.73 16 3 C -0.16 -1.95 9.48 71.98 0.68 -1.27 16 4 N -0.71 -8.36 5.08 -442.54 -2.25 -10.61 16 5 C 0.52 10.53 7.79 87.66 0.68 11.21 16 6 O -0.58 -17.80 15.70 -3.03 -0.05 -17.85 16 7 C -0.05 -0.88 6.33 29.10 0.18 -0.69 16 8 C 0.18 4.91 6.71 138.46 0.93 5.84 16 9 N -0.40 -12.23 12.16 -60.33 -0.73 -12.96 16 10 O 0.07 2.04 11.31 74.83 0.85 2.89 16 11 C 0.20 5.41 7.75 88.38 0.68 6.10 16 12 C 0.03 0.71 5.97 29.10 0.17 0.88 16 13 C -0.17 -4.94 5.12 -19.83 -0.10 -5.04 16 14 C -0.05 -1.57 9.69 22.25 0.22 -1.35 16 15 C -0.25 -10.47 9.17 22.39 0.21 -10.26 16 16 C 0.12 5.85 6.65 22.58 0.15 6.00 16 17 O -0.23 -13.72 9.76 -22.77 -0.22 -13.94 16 18 C -0.41 -23.94 9.49 67.92 0.64 -23.29 16 19 H 0.10 5.37 5.20 -2.91 -0.02 5.35 16 20 C -0.02 -1.23 5.49 84.83 0.47 -0.76 16 21 N -0.92 -56.01 13.67 21.61 0.30 -55.71 16 22 Si 1.02 42.40 29.55 68.60 2.03 44.43 16 23 H -0.26 -10.09 7.11 99.48 0.71 -9.38 16 24 H -0.27 -10.91 7.11 99.48 0.71 -10.21 16 25 H -0.26 -10.02 7.11 99.48 0.71 -9.31 16 26 C -0.21 -8.48 9.99 22.39 0.22 -8.26 16 27 C -0.05 -1.52 9.69 22.25 0.22 -1.30 16 28 N -0.50 -14.51 11.55 -303.20 -3.50 -18.01 16 29 H 0.08 0.19 8.14 -2.39 -0.02 0.17 16 30 H 0.08 0.33 8.14 -2.38 -0.02 0.31 16 31 H 0.06 0.34 8.14 -2.39 -0.02 0.32 16 32 H 0.06 1.09 7.58 -2.39 -0.02 1.07 16 33 H 0.03 0.58 8.14 -2.39 -0.02 0.56 16 34 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 35 H 0.07 0.67 8.14 -2.38 -0.02 0.65 16 36 H 0.42 1.82 8.60 -92.71 -0.80 1.02 16 37 H 0.15 1.69 8.14 -2.39 -0.02 1.67 16 38 H 0.15 1.82 8.14 -2.39 -0.02 1.80 16 39 H 0.13 2.26 8.09 -2.38 -0.02 2.25 16 40 H 0.14 1.95 8.08 -2.39 -0.02 1.93 16 41 H 0.14 3.84 8.06 -2.92 -0.02 3.82 16 42 H 0.12 5.18 5.64 -2.91 -0.02 5.16 16 43 H 0.27 15.27 8.31 -92.70 -0.77 14.50 16 44 H 0.12 4.72 8.06 -2.91 -0.02 4.70 16 45 H 0.16 3.61 8.06 -2.91 -0.02 3.59 16 Total: -1.00 -84.51 392.79 2.83 -81.68 By element: Atomic # 1 Polarization: 20.45 SS G_CDS: 0.24 Total: 20.68 kcal Atomic # 6 Polarization: -26.78 SS G_CDS: 6.17 Total: -20.60 kcal Atomic # 7 Polarization: -91.10 SS G_CDS: -6.19 Total: -97.29 kcal Atomic # 8 Polarization: -29.47 SS G_CDS: 0.58 Total: -28.90 kcal Atomic # 14 Polarization: 42.40 SS G_CDS: 2.03 Total: 44.43 kcal Total: -84.51 2.83 -81.68 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000277856085.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.090 kcal (2) G-P(sol) polarization free energy of solvation -84.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.419 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.829 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.679 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.589 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds