Wall clock time and date at job start Wed Apr 1 2020 03:42:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52997 * 109.47051 * 2 1 4 4 H 1.09003 * 109.47626 * 305.00415 * 3 2 1 5 5 C 1.50698 * 109.46759 * 185.00065 * 3 2 1 6 6 H 1.08002 * 120.00214 * 239.99748 * 5 3 2 7 7 C 1.37875 * 120.00013 * 60.00808 * 5 3 2 8 8 N 1.31510 * 119.99994 * 359.97438 * 7 5 3 9 9 Si 1.86802 * 119.99864 * 179.97438 * 7 5 3 10 10 H 1.48502 * 109.47449 * 359.97438 * 9 7 5 11 11 H 1.48499 * 109.47106 * 119.99715 * 9 7 5 12 12 H 1.48502 * 109.47081 * 239.99340 * 9 7 5 13 13 N 1.46504 * 109.47120 * 65.00138 * 3 2 1 14 14 C 1.34777 * 120.00209 * 274.99941 * 13 3 2 15 15 O 1.21358 * 119.99537 * 0.02562 * 14 13 3 16 16 C 1.49350 * 120.00060 * 179.97438 * 14 13 3 17 17 O 1.21376 * 119.99804 * 0.02562 * 16 14 13 18 18 N 1.34777 * 120.00060 * 179.97438 * 16 14 13 19 19 C 1.39723 * 119.99992 * 174.72848 * 18 16 14 20 20 C 1.39001 * 120.04046 * 326.45376 * 19 18 16 21 21 C 1.38122 * 120.06185 * 179.76778 * 20 19 18 22 22 C 1.38193 * 120.14497 * 0.51262 * 21 20 19 23 23 C 1.38906 * 120.08236 * 359.73881 * 22 21 20 24 24 N 1.39925 * 120.03339 * 180.02562 * 23 22 21 25 25 C 1.46357 * 134.66535 * 359.97438 * 24 23 22 26 26 C 1.52875 * 90.57394 * 179.97438 * 25 24 23 27 27 C 1.34604 * 134.66869 * 179.61522 * 24 23 22 28 28 O 1.21288 * 131.84335 * 0.02636 * 27 24 23 29 29 C 1.38748 * 119.93433 * 0.02562 * 23 22 21 30 30 H 1.08996 * 109.47134 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.46619 * 300.00001 * 1 2 3 32 32 H 1.09005 * 109.46929 * 59.99674 * 1 2 3 33 33 H 1.09000 * 109.46619 * 239.99999 * 2 1 3 34 34 H 1.08997 * 109.46953 * 120.00691 * 2 1 3 35 35 H 0.97005 * 119.99898 * 180.02562 * 8 7 5 36 36 H 0.97000 * 119.99447 * 95.27093 * 13 3 2 37 37 H 0.97002 * 119.99333 * 354.72099 * 18 16 14 38 38 H 1.07997 * 119.96827 * 0.02562 * 20 19 18 39 39 H 1.08003 * 119.92196 * 180.22852 * 21 20 19 40 40 H 1.08003 * 119.95611 * 179.76185 * 22 21 20 41 41 H 1.08998 * 113.04977 * 295.42688 * 25 24 23 42 42 H 1.09003 * 113.05411 * 64.51432 * 25 24 23 43 43 H 1.09004 * 114.38004 * 113.39731 * 26 25 24 44 44 H 1.09001 * 114.38132 * 246.56061 * 26 25 24 45 45 H 1.08003 * 120.07258 * 180.02562 * 29 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8418 5 6 3.5419 1.4442 -0.1238 6 1 4.1473 1.8888 0.6522 7 6 4.1432 0.8784 -1.2281 8 7 3.4062 0.3368 -2.1730 9 14 6.0049 0.8812 -1.3819 10 1 6.5988 1.5471 -0.1948 11 1 6.4970 -0.5175 -1.4632 12 1 6.3990 1.6167 -2.6103 13 7 1.6525 2.0975 1.2519 14 6 0.4352 2.6644 1.3671 15 8 -0.3400 2.6318 0.4339 16 6 0.0399 3.3316 2.6435 17 8 0.8152 3.3636 3.5768 18 7 -1.1772 3.8989 2.7585 19 6 -1.5893 4.4256 3.9853 20 6 -1.1788 3.8291 5.1718 21 6 -1.5820 4.3522 6.3849 22 6 -2.4031 5.4631 6.4231 23 6 -2.8212 6.0608 5.2410 24 7 -3.6521 7.1860 5.2809 25 6 -4.2588 7.9795 6.3506 26 6 -4.9146 8.8973 5.3188 27 6 -4.2131 7.9815 4.3513 28 8 -4.1684 7.9657 3.1393 29 6 -2.4142 5.5411 4.0206 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3632 0.5138 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 1.8934 -0.5139 0.8899 35 1 3.8293 -0.0616 -2.9497 36 1 2.2735 2.1265 1.9964 37 1 -1.7669 3.9417 1.9895 38 1 -0.5404 2.9584 5.1452 39 1 -1.2586 3.8891 7.3055 40 1 -2.7197 5.8673 7.3733 41 1 -4.9814 7.4171 6.9419 42 1 -3.5238 8.4917 6.9716 43 1 -6.0026 8.8382 5.2911 44 1 -4.5365 9.9197 5.3213 45 1 -2.7376 6.0043 3.1002 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000280509883.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:42:42 Heat of formation + Delta-G solvation = -37.684954 kcal Electronic energy + Delta-G solvation = -29193.033661 eV Core-core repulsion = 24984.031123 eV Total energy + Delta-G solvation = -4209.002538 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.71128 -40.75662 -39.13621 -37.98145 -37.01197 -35.52639 -34.75959 -32.43429 -32.40724 -31.00754 -30.10716 -28.27800 -27.29434 -25.30624 -24.70137 -23.36172 -22.99087 -22.01978 -20.61429 -19.53846 -19.21291 -18.67200 -17.86291 -17.22961 -17.08198 -16.56135 -16.34919 -16.31357 -15.76082 -15.33445 -15.23328 -14.69840 -14.26760 -14.02151 -13.91789 -13.72911 -13.45305 -13.40325 -13.30692 -12.76275 -12.63523 -12.51492 -12.22613 -12.09857 -11.76602 -11.61674 -11.35000 -11.20262 -10.99544 -10.97607 -10.88257 -10.44300 -10.36217 -10.28064 -10.16996 -9.71186 -9.14334 -9.08980 -8.61269 -8.58093 -8.08465 -8.04072 -6.18364 -4.28005 0.90025 1.03612 1.83670 2.18673 2.25445 2.68714 3.22354 3.24223 3.30651 3.34338 3.52182 3.75416 3.95168 4.05079 4.32381 4.33367 4.61322 4.73492 4.82107 4.94533 5.02814 5.06189 5.13686 5.16739 5.22448 5.22801 5.42509 5.65936 6.00331 6.12334 6.25211 6.30573 6.35498 6.36275 6.41991 6.54351 6.78105 6.93370 6.99727 7.12316 7.16833 7.26297 7.48037 7.62234 7.63749 7.76400 7.87407 8.07076 8.42009 8.60581 8.84726 9.38856 10.87070 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.020616 B = 0.002056 C = 0.002027 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1357.813386 B =13614.527481 C =13812.242815 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.129 4.129 3 C 0.267 3.733 4 H 0.055 0.945 5 C -0.536 4.536 6 H 0.065 0.935 7 C 0.068 3.932 8 N -0.881 5.881 9 Si 0.904 3.096 10 H -0.272 1.272 11 H -0.282 1.282 12 H -0.282 1.282 13 N -0.667 5.667 14 C 0.494 3.506 15 O -0.527 6.527 16 C 0.509 3.491 17 O -0.502 6.502 18 N -0.652 5.652 19 C 0.187 3.813 20 C -0.145 4.145 21 C -0.067 4.067 22 C -0.173 4.173 23 C 0.198 3.802 24 N -0.578 5.578 25 C 0.095 3.905 26 C -0.165 4.165 27 C 0.512 3.488 28 O -0.494 6.494 29 C -0.179 4.179 30 H 0.026 0.974 31 H 0.035 0.965 32 H 0.052 0.948 33 H 0.104 0.896 34 H 0.035 0.965 35 H 0.265 0.735 36 H 0.402 0.598 37 H 0.424 0.576 38 H 0.139 0.861 39 H 0.133 0.867 40 H 0.125 0.875 41 H 0.094 0.906 42 H 0.094 0.906 43 H 0.127 0.873 44 H 0.126 0.874 45 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.247 12.945 20.067 28.883 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.168 4.168 3 C 0.166 3.834 4 H 0.073 0.927 5 C -0.574 4.574 6 H 0.083 0.917 7 C -0.136 4.136 8 N -0.519 5.519 9 Si 0.731 3.269 10 H -0.196 1.196 11 H -0.208 1.208 12 H -0.208 1.208 13 N -0.315 5.315 14 C 0.273 3.727 15 O -0.406 6.406 16 C 0.292 3.708 17 O -0.375 6.375 18 N -0.299 5.299 19 C 0.091 3.909 20 C -0.166 4.166 21 C -0.086 4.086 22 C -0.194 4.194 23 C 0.105 3.895 24 N -0.305 5.305 25 C -0.027 4.027 26 C -0.205 4.205 27 C 0.299 3.701 28 O -0.365 6.365 29 C -0.202 4.202 30 H 0.046 0.954 31 H 0.054 0.946 32 H 0.071 0.929 33 H 0.122 0.878 34 H 0.054 0.946 35 H 0.075 0.925 36 H 0.236 0.764 37 H 0.263 0.737 38 H 0.157 0.843 39 H 0.151 0.849 40 H 0.143 0.857 41 H 0.112 0.888 42 H 0.112 0.888 43 H 0.145 0.855 44 H 0.144 0.856 45 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -16.039 12.646 19.096 27.961 hybrid contribution 1.016 -0.029 -0.087 1.020 sum -15.023 12.617 19.009 27.318 Atomic orbital electron populations 1.21860 0.98294 0.98442 1.01050 1.21964 0.92648 0.99350 1.02796 1.19038 0.94839 0.89420 0.80068 0.92719 1.21239 0.90278 1.39358 1.06574 0.91700 1.24878 0.98863 0.94615 0.95243 1.69892 1.35185 1.37445 1.09345 0.86350 0.84508 0.77826 0.78205 1.19626 1.20801 1.20828 1.46465 1.13236 1.52511 1.19331 1.19552 0.84612 0.81575 0.86982 1.90754 1.51124 1.59405 1.39280 1.21046 0.81285 0.78636 0.89857 1.90738 1.50324 1.55984 1.40497 1.43285 1.17607 1.57076 1.11896 1.17449 0.95550 0.92234 0.85657 1.21186 1.02878 1.01842 0.90724 1.20812 0.95395 0.94716 0.97710 1.20616 1.03419 0.99302 0.96060 1.17193 0.91923 0.86532 0.93852 1.47606 1.46300 1.26399 1.10236 1.22718 0.96848 0.91034 0.92055 1.23420 1.03259 1.00394 0.93449 1.22321 0.78909 0.81692 0.87156 1.90761 1.60937 1.71896 1.12941 1.20552 1.04692 0.97363 0.97636 0.95444 0.94634 0.92924 0.87813 0.94637 0.92483 0.76375 0.73726 0.84301 0.84925 0.85670 0.88755 0.88772 0.85533 0.85590 0.84491 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.99 8.51 37.16 0.32 -2.68 16 2 C -0.13 -3.06 5.45 -26.73 -0.15 -3.20 16 3 C 0.27 6.60 2.24 -69.08 -0.15 6.44 16 4 H 0.06 1.53 7.58 -51.93 -0.39 1.14 16 5 C -0.54 -14.03 8.73 -34.44 -0.30 -14.33 16 6 H 0.06 1.65 7.74 -52.49 -0.41 1.25 16 7 C 0.07 1.79 5.29 -17.82 -0.09 1.69 16 8 N -0.88 -24.19 11.29 55.43 0.63 -23.57 16 9 Si 0.90 20.53 29.54 -169.99 -5.02 15.51 16 10 H -0.27 -6.10 7.11 56.52 0.40 -5.69 16 11 H -0.28 -6.36 7.11 56.52 0.40 -5.95 16 12 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 13 N -0.67 -14.12 5.02 -55.40 -0.28 -14.40 16 14 C 0.49 9.84 6.46 -11.63 -0.08 9.76 16 15 O -0.53 -11.40 13.62 5.49 0.07 -11.32 16 16 C 0.51 8.80 7.62 -11.63 -0.09 8.71 16 17 O -0.50 -9.16 14.17 5.47 0.08 -9.08 16 18 N -0.65 -9.66 5.32 -10.31 -0.05 -9.71 16 19 C 0.19 2.58 6.27 -83.78 -0.53 2.05 16 20 C -0.15 -1.87 8.65 -39.34 -0.34 -2.21 16 21 C -0.07 -0.67 10.03 -39.64 -0.40 -1.07 16 22 C -0.17 -1.57 9.73 -39.35 -0.38 -1.95 16 23 C 0.20 2.15 6.75 -83.73 -0.56 1.59 16 24 N -0.58 -5.02 3.56 -138.62 -0.49 -5.52 16 25 C 0.10 0.33 8.33 -16.46 -0.14 0.19 16 26 C -0.17 -0.56 8.56 -28.01 -0.24 -0.80 16 27 C 0.51 4.89 8.89 -23.40 -0.21 4.68 16 28 O -0.49 -7.00 16.92 5.55 0.09 -6.90 16 29 C -0.18 -2.33 9.58 -39.19 -0.38 -2.70 16 30 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.03 0.74 5.64 -51.93 -0.29 0.44 16 32 H 0.05 1.19 7.85 -51.93 -0.41 0.78 16 33 H 0.10 2.71 5.95 -51.93 -0.31 2.40 16 34 H 0.03 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.27 6.90 8.31 -40.82 -0.34 6.56 16 36 H 0.40 7.98 8.00 -40.82 -0.33 7.65 16 37 H 0.42 5.82 8.29 -40.82 -0.34 5.48 16 38 H 0.14 1.93 6.42 -52.49 -0.34 1.59 16 39 H 0.13 0.97 8.06 -52.48 -0.42 0.55 16 40 H 0.13 0.77 7.84 -52.48 -0.41 0.36 16 41 H 0.09 0.15 8.14 -51.93 -0.42 -0.27 16 42 H 0.09 0.18 8.14 -51.93 -0.42 -0.25 16 43 H 0.13 0.18 8.14 -51.93 -0.42 -0.24 16 44 H 0.13 0.21 8.14 -51.93 -0.42 -0.21 16 45 H 0.14 1.91 6.88 -52.48 -0.36 1.55 16 LS Contribution 379.27 15.07 5.72 5.72 Total: -1.00 -32.84 379.27 -8.65 -41.49 By element: Atomic # 1 Polarization: 17.28 SS G_CDS: -5.68 Total: 11.60 kcal Atomic # 6 Polarization: 9.90 SS G_CDS: -3.71 Total: 6.18 kcal Atomic # 7 Polarization: -53.00 SS G_CDS: -0.20 Total: -53.20 kcal Atomic # 8 Polarization: -27.55 SS G_CDS: 0.25 Total: -27.30 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -5.02 Total: 15.51 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -32.84 -8.65 -41.49 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000280509883.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.810 kcal (2) G-P(sol) polarization free energy of solvation -32.843 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.033 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.652 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.495 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.685 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds