Wall clock time and date at job start Wed Apr 1 2020 03:42:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52997 * 109.47051 * 2 1 4 4 H 1.09003 * 109.47626 * 305.00415 * 3 2 1 5 5 C 1.50698 * 109.46759 * 185.00065 * 3 2 1 6 6 H 1.08002 * 120.00214 * 239.99748 * 5 3 2 7 7 C 1.37875 * 120.00013 * 60.00808 * 5 3 2 8 8 N 1.31510 * 119.99994 * 359.97438 * 7 5 3 9 9 Si 1.86802 * 119.99864 * 179.97438 * 7 5 3 10 10 H 1.48502 * 109.47449 * 359.97438 * 9 7 5 11 11 H 1.48499 * 109.47106 * 119.99715 * 9 7 5 12 12 H 1.48502 * 109.47081 * 239.99340 * 9 7 5 13 13 N 1.46504 * 109.47120 * 65.00138 * 3 2 1 14 14 C 1.34777 * 120.00209 * 274.99941 * 13 3 2 15 15 O 1.21358 * 119.99537 * 0.02562 * 14 13 3 16 16 C 1.49350 * 120.00060 * 179.97438 * 14 13 3 17 17 O 1.21376 * 119.99804 * 0.02562 * 16 14 13 18 18 N 1.34777 * 120.00060 * 179.97438 * 16 14 13 19 19 C 1.39723 * 119.99992 * 174.72848 * 18 16 14 20 20 C 1.39001 * 120.04046 * 326.45376 * 19 18 16 21 21 C 1.38122 * 120.06185 * 179.76778 * 20 19 18 22 22 C 1.38193 * 120.14497 * 0.51262 * 21 20 19 23 23 C 1.38906 * 120.08236 * 359.73881 * 22 21 20 24 24 N 1.39925 * 120.03339 * 180.02562 * 23 22 21 25 25 C 1.46357 * 134.66535 * 359.97438 * 24 23 22 26 26 C 1.52875 * 90.57394 * 179.97438 * 25 24 23 27 27 C 1.34604 * 134.66869 * 179.61522 * 24 23 22 28 28 O 1.21288 * 131.84335 * 0.02636 * 27 24 23 29 29 C 1.38748 * 119.93433 * 0.02562 * 23 22 21 30 30 H 1.08996 * 109.47134 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.46619 * 300.00001 * 1 2 3 32 32 H 1.09005 * 109.46929 * 59.99674 * 1 2 3 33 33 H 1.09000 * 109.46619 * 239.99999 * 2 1 3 34 34 H 1.08997 * 109.46953 * 120.00691 * 2 1 3 35 35 H 0.97005 * 119.99898 * 180.02562 * 8 7 5 36 36 H 0.97000 * 119.99447 * 95.27093 * 13 3 2 37 37 H 0.97002 * 119.99333 * 354.72099 * 18 16 14 38 38 H 1.07997 * 119.96827 * 0.02562 * 20 19 18 39 39 H 1.08003 * 119.92196 * 180.22852 * 21 20 19 40 40 H 1.08003 * 119.95611 * 179.76185 * 22 21 20 41 41 H 1.08998 * 113.04977 * 295.42688 * 25 24 23 42 42 H 1.09003 * 113.05411 * 64.51432 * 25 24 23 43 43 H 1.09004 * 114.38004 * 113.39731 * 26 25 24 44 44 H 1.09001 * 114.38132 * 246.56061 * 26 25 24 45 45 H 1.08003 * 120.07258 * 180.02562 * 29 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8418 5 6 3.5419 1.4442 -0.1238 6 1 4.1473 1.8888 0.6522 7 6 4.1432 0.8784 -1.2281 8 7 3.4062 0.3368 -2.1730 9 14 6.0049 0.8812 -1.3819 10 1 6.5988 1.5471 -0.1948 11 1 6.4970 -0.5175 -1.4632 12 1 6.3990 1.6167 -2.6103 13 7 1.6525 2.0975 1.2519 14 6 0.4352 2.6644 1.3671 15 8 -0.3400 2.6318 0.4339 16 6 0.0399 3.3316 2.6435 17 8 0.8152 3.3636 3.5768 18 7 -1.1772 3.8989 2.7585 19 6 -1.5893 4.4256 3.9853 20 6 -1.1788 3.8291 5.1718 21 6 -1.5820 4.3522 6.3849 22 6 -2.4031 5.4631 6.4231 23 6 -2.8212 6.0608 5.2410 24 7 -3.6521 7.1860 5.2809 25 6 -4.2588 7.9795 6.3506 26 6 -4.9146 8.8973 5.3188 27 6 -4.2131 7.9815 4.3513 28 8 -4.1684 7.9657 3.1393 29 6 -2.4142 5.5411 4.0206 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3632 0.5138 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 1.8934 -0.5139 0.8899 35 1 3.8293 -0.0616 -2.9497 36 1 2.2735 2.1265 1.9964 37 1 -1.7669 3.9417 1.9895 38 1 -0.5404 2.9584 5.1452 39 1 -1.2586 3.8891 7.3055 40 1 -2.7197 5.8673 7.3733 41 1 -4.9814 7.4171 6.9419 42 1 -3.5238 8.4917 6.9716 43 1 -6.0026 8.8382 5.2911 44 1 -4.5365 9.9197 5.3213 45 1 -2.7376 6.0043 3.1002 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000280509883.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:42:41 Heat of formation + Delta-G solvation = -61.032654 kcal Electronic energy + Delta-G solvation = -29194.046094 eV Core-core repulsion = 24984.031123 eV Total energy + Delta-G solvation = -4210.014970 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.40505 -42.01833 -40.45936 -39.24989 -37.81443 -37.25251 -36.05268 -34.35210 -33.13322 -32.85588 -31.11781 -29.23768 -28.88918 -26.53272 -25.50788 -24.86331 -24.02481 -23.11300 -22.01643 -21.31822 -20.18106 -20.11026 -18.70280 -18.26615 -17.82011 -17.73016 -17.66993 -17.36363 -17.15542 -16.86672 -16.70563 -16.13845 -15.73622 -15.35282 -15.02688 -14.74057 -14.64946 -14.30573 -14.29513 -14.10430 -13.87853 -13.54229 -13.31183 -13.21537 -13.06423 -12.95036 -12.86875 -12.73652 -12.57230 -12.46352 -12.17365 -12.12502 -11.85233 -11.63222 -11.18154 -11.12522 -11.03718 -10.68602 -10.57163 -9.89523 -9.57888 -8.91700 -8.20865 -6.38060 -0.14923 0.14354 0.54059 1.20836 1.42741 1.44806 1.46610 1.56557 1.77327 2.09662 2.37327 2.64899 2.75881 2.83333 3.08998 3.43941 3.62898 3.83041 4.03107 4.11577 4.21613 4.26878 4.36775 4.45379 4.49044 4.51746 4.65549 4.68089 4.81248 4.90466 4.98468 5.06537 5.09403 5.15399 5.19696 5.31935 5.35672 5.40961 5.49753 5.54073 5.65610 5.69381 5.75905 5.91512 5.96337 6.08401 6.44615 6.63830 6.72537 6.96259 7.05638 7.33737 8.84639 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.020616 B = 0.002056 C = 0.002027 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1357.813386 B =13614.527481 C =13812.242815 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.122 4.122 3 C 0.275 3.725 4 H 0.013 0.987 5 C -0.553 4.553 6 H 0.069 0.931 7 C 0.020 3.980 8 N -0.910 5.910 9 Si 0.971 3.029 10 H -0.265 1.265 11 H -0.276 1.276 12 H -0.282 1.282 13 N -0.668 5.668 14 C 0.495 3.505 15 O -0.547 6.547 16 C 0.518 3.482 17 O -0.513 6.513 18 N -0.641 5.641 19 C 0.160 3.840 20 C -0.162 4.162 21 C -0.059 4.059 22 C -0.153 4.153 23 C 0.191 3.809 24 N -0.587 5.587 25 C 0.097 3.903 26 C -0.138 4.138 27 C 0.487 3.513 28 O -0.558 6.558 29 C -0.196 4.196 30 H 0.050 0.950 31 H 0.039 0.961 32 H 0.033 0.967 33 H 0.080 0.920 34 H 0.042 0.958 35 H 0.267 0.733 36 H 0.409 0.591 37 H 0.426 0.574 38 H 0.125 0.875 39 H 0.166 0.834 40 H 0.168 0.832 41 H 0.122 0.878 42 H 0.119 0.881 43 H 0.152 0.848 44 H 0.149 0.851 45 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.001 14.284 24.062 32.742 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.161 4.161 3 C 0.173 3.827 4 H 0.031 0.969 5 C -0.591 4.591 6 H 0.087 0.913 7 C -0.181 4.181 8 N -0.548 5.548 9 Si 0.795 3.205 10 H -0.189 1.189 11 H -0.202 1.202 12 H -0.208 1.208 13 N -0.318 5.318 14 C 0.275 3.725 15 O -0.426 6.426 16 C 0.301 3.699 17 O -0.387 6.387 18 N -0.288 5.288 19 C 0.066 3.934 20 C -0.183 4.183 21 C -0.078 4.078 22 C -0.173 4.173 23 C 0.097 3.903 24 N -0.313 5.313 25 C -0.022 4.022 26 C -0.177 4.177 27 C 0.277 3.723 28 O -0.434 6.434 29 C -0.219 4.219 30 H 0.069 0.931 31 H 0.058 0.942 32 H 0.053 0.947 33 H 0.098 0.902 34 H 0.061 0.939 35 H 0.077 0.923 36 H 0.245 0.755 37 H 0.265 0.735 38 H 0.143 0.857 39 H 0.183 0.817 40 H 0.185 0.815 41 H 0.140 0.860 42 H 0.137 0.863 43 H 0.169 0.831 44 H 0.166 0.834 45 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -16.836 14.021 23.173 31.891 hybrid contribution 1.114 -0.345 -1.255 1.713 sum -15.722 13.676 21.918 30.243 Atomic orbital electron populations 1.21716 0.96678 0.99720 1.00310 1.21815 0.94026 0.98444 1.01840 1.18675 0.94227 0.89643 0.80180 0.96903 1.21536 0.91079 1.39504 1.06950 0.91312 1.25709 1.03325 0.94170 0.94864 1.70020 1.36989 1.37965 1.09798 0.85316 0.79052 0.77958 0.78139 1.18881 1.20161 1.20810 1.46230 1.14064 1.52945 1.18512 1.19956 0.83836 0.80907 0.87799 1.90740 1.51586 1.59892 1.40403 1.20319 0.82084 0.79097 0.88433 1.90729 1.50805 1.56901 1.40273 1.43155 1.16603 1.56176 1.12817 1.17619 0.97175 0.93382 0.85239 1.21240 1.03526 1.01976 0.91607 1.21206 0.94435 0.94560 0.97614 1.21035 1.01419 0.97971 0.96897 1.17447 0.91960 0.87342 0.93567 1.48061 1.45384 1.25596 1.12302 1.23111 0.97574 0.90341 0.91194 1.23575 1.04227 1.00290 0.89643 1.23790 0.78840 0.82653 0.87013 1.90719 1.63135 1.73655 1.15939 1.20489 1.05522 0.97694 0.98221 0.93076 0.94225 0.94731 0.90200 0.93930 0.92345 0.75510 0.73536 0.85697 0.81666 0.81466 0.86024 0.86326 0.83073 0.83365 0.86669 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.56 8.51 71.98 0.61 -4.95 16 2 C -0.12 -5.96 5.45 30.60 0.17 -5.80 16 3 C 0.27 14.11 2.24 44.24 0.10 14.21 16 4 H 0.01 0.78 7.58 -2.39 -0.02 0.76 16 5 C -0.55 -29.53 8.73 25.60 0.22 -29.31 16 6 H 0.07 3.53 7.74 -2.91 -0.02 3.51 16 7 C 0.02 1.08 5.29 84.65 0.45 1.53 16 8 N -0.91 -51.22 11.29 21.45 0.24 -50.97 16 9 Si 0.97 42.37 29.54 68.60 2.03 44.40 16 10 H -0.26 -11.16 7.11 99.48 0.71 -10.46 16 11 H -0.28 -11.73 7.11 99.48 0.71 -11.02 16 12 H -0.28 -12.25 7.11 99.48 0.71 -11.54 16 13 N -0.67 -29.26 5.02 -447.53 -2.24 -31.51 16 14 C 0.50 20.51 6.46 87.24 0.56 21.07 16 15 O -0.55 -24.79 13.62 -3.27 -0.04 -24.83 16 16 C 0.52 18.58 7.62 87.24 0.66 19.25 16 17 O -0.51 -19.05 14.17 -3.33 -0.05 -19.10 16 18 N -0.64 -20.03 5.32 -304.90 -1.62 -21.65 16 19 C 0.16 4.55 6.27 38.20 0.24 4.79 16 20 C -0.16 -4.11 8.65 22.43 0.19 -3.91 16 21 C -0.06 -1.01 10.03 22.23 0.22 -0.79 16 22 C -0.15 -2.21 9.73 22.42 0.22 -1.99 16 23 C 0.19 3.86 6.75 38.13 0.26 4.12 16 24 N -0.59 -8.93 3.56 -710.95 -2.53 -11.46 16 25 C 0.10 0.22 8.33 78.41 0.65 0.87 16 26 C -0.14 -0.43 8.56 29.76 0.25 -0.17 16 27 C 0.49 8.91 8.89 79.69 0.71 9.62 16 28 O -0.56 -16.73 16.92 -3.05 -0.05 -16.78 16 29 C -0.20 -5.27 9.58 22.52 0.22 -5.06 16 30 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16 31 H 0.04 1.67 5.64 -2.39 -0.01 1.66 16 32 H 0.03 1.61 7.85 -2.38 -0.02 1.59 16 33 H 0.08 4.31 5.95 -2.39 -0.01 4.30 16 34 H 0.04 1.97 8.14 -2.39 -0.02 1.95 16 35 H 0.27 14.20 8.31 -92.70 -0.77 13.42 16 36 H 0.41 16.63 8.00 -92.71 -0.74 15.89 16 37 H 0.43 12.65 8.29 -92.71 -0.77 11.88 16 38 H 0.13 3.49 6.42 -2.91 -0.02 3.47 16 39 H 0.17 1.72 8.06 -2.91 -0.02 1.70 16 40 H 0.17 1.03 7.84 -2.91 -0.02 1.01 16 41 H 0.12 -0.31 8.14 -2.39 -0.02 -0.33 16 42 H 0.12 -0.23 8.14 -2.39 -0.02 -0.25 16 43 H 0.15 -0.21 8.14 -2.39 -0.02 -0.23 16 44 H 0.15 -0.13 8.14 -2.39 -0.02 -0.15 16 45 H 0.12 3.54 6.88 -2.91 -0.02 3.52 16 Total: -1.00 -76.83 379.27 1.02 -75.81 By element: Atomic # 1 Polarization: 33.06 SS G_CDS: -0.45 Total: 32.61 kcal Atomic # 6 Polarization: 17.74 SS G_CDS: 5.74 Total: 23.48 kcal Atomic # 7 Polarization: -109.44 SS G_CDS: -6.16 Total: -115.60 kcal Atomic # 8 Polarization: -60.57 SS G_CDS: -0.14 Total: -60.71 kcal Atomic # 14 Polarization: 42.37 SS G_CDS: 2.03 Total: 44.40 kcal Total: -76.83 1.02 -75.81 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000280509883.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.780 kcal (2) G-P(sol) polarization free energy of solvation -76.831 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.052 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.019 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.812 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.033 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds