Wall clock time and date at job start Wed Apr 1 2020 03:42:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.47348 * 2 1 4 4 H 1.09009 * 109.46874 * 56.57733 * 3 2 1 5 5 C 1.50695 * 109.47180 * 176.57690 * 3 2 1 6 6 H 1.07994 * 120.00047 * 114.62551 * 5 3 2 7 7 C 1.37882 * 119.99890 * 294.62140 * 5 3 2 8 8 N 1.31512 * 119.99944 * 160.51571 * 7 5 3 9 9 Si 1.86803 * 120.00300 * 340.52160 * 7 5 3 10 10 H 1.48495 * 109.47136 * 179.97438 * 9 7 5 11 11 H 1.48498 * 109.46841 * 299.99980 * 9 7 5 12 12 H 1.48503 * 109.46721 * 59.99703 * 9 7 5 13 13 N 1.46502 * 109.47382 * 296.57919 * 3 2 1 14 14 C 1.34772 * 119.99912 * 84.99524 * 13 3 2 15 15 O 1.21364 * 120.00552 * 0.02562 * 14 13 3 16 16 C 1.49354 * 119.99737 * 180.02562 * 14 13 3 17 17 O 1.21384 * 120.00165 * 0.02562 * 16 14 13 18 18 N 1.34774 * 120.00126 * 180.02562 * 16 14 13 19 19 C 1.39731 * 120.00228 * 184.41144 * 18 16 14 20 20 C 1.38995 * 120.04328 * 321.22145 * 19 18 16 21 21 C 1.38123 * 120.06536 * 179.69387 * 20 19 18 22 22 C 1.38187 * 120.14293 * 0.59694 * 21 20 19 23 23 C 1.38911 * 120.08673 * 359.68182 * 22 21 20 24 24 N 1.39923 * 120.03630 * 180.02562 * 23 22 21 25 25 C 1.46353 * 134.66852 * 359.97061 * 24 23 22 26 26 C 1.52880 * 90.57450 * 179.97438 * 25 24 23 27 27 C 1.34606 * 134.66282 * 179.61215 * 24 23 22 28 28 O 1.21279 * 131.85145 * 0.02562 * 27 24 23 29 29 C 1.38760 * 119.93097 * 0.02562 * 23 22 21 30 30 H 1.08999 * 109.46665 * 299.99926 * 1 2 3 31 31 H 1.09002 * 109.47142 * 59.99414 * 1 2 3 32 32 H 1.08996 * 109.47294 * 179.97438 * 1 2 3 33 33 H 1.08999 * 109.46665 * 240.00074 * 2 1 3 34 34 H 1.09002 * 109.46933 * 120.00074 * 2 1 3 35 35 H 0.97010 * 119.99754 * 354.93042 * 8 7 5 36 36 H 0.97003 * 119.99602 * 265.00368 * 13 3 2 37 37 H 0.97000 * 120.00387 * 4.41701 * 18 16 14 38 38 H 1.08003 * 119.96502 * 359.97438 * 20 19 18 39 39 H 1.07997 * 119.92740 * 180.29388 * 21 20 19 40 40 H 1.08006 * 119.95524 * 179.69761 * 22 21 20 41 41 H 1.09000 * 113.05007 * 295.43811 * 25 24 23 42 42 H 1.08999 * 113.05150 * 64.52001 * 25 24 23 43 43 H 1.08996 * 114.38035 * 113.39819 * 26 25 24 44 44 H 1.09002 * 114.37505 * 246.56423 * 26 25 24 45 45 H 1.07997 * 120.06871 * 180.02562 * 29 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6275 1.9737 0.8578 5 6 3.5446 1.4433 0.0848 6 1 4.1319 1.8162 -0.7412 7 6 4.1715 0.9678 1.2171 8 7 5.4352 0.6071 1.1668 9 14 3.2259 0.8360 2.8228 10 1 4.1194 0.3001 3.8808 11 1 2.7371 2.1804 3.2211 12 1 2.0694 -0.0779 2.6424 13 7 1.6203 2.1089 -1.2352 14 6 0.4005 2.6767 -1.3135 15 8 -0.3500 2.6363 -0.3606 16 6 -0.0277 3.3557 -2.5730 17 8 0.7227 3.3957 -3.5263 18 7 -1.2473 3.9239 -2.6512 19 6 -1.6840 4.4779 -3.8574 20 6 -0.7939 5.1758 -4.6653 21 6 -1.2235 5.7181 -5.8607 22 6 -2.5417 5.5796 -6.2516 23 6 -3.4379 4.8883 -5.4462 24 7 -4.7722 4.7481 -5.8432 25 6 -5.5518 5.1836 -7.0028 26 6 -6.8048 4.5226 -6.4280 27 6 -5.8586 4.1529 -5.3166 28 8 -6.0212 3.5279 -4.2900 29 6 -3.0084 4.3368 -4.2475 30 1 -0.3632 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3634 -1.0276 -0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5139 0.8900 35 1 5.9057 0.6055 0.3184 36 1 2.2202 2.1414 -1.9968 37 1 -1.8220 3.9484 -1.8701 38 1 0.2358 5.2902 -4.3601 39 1 -0.5289 6.2559 -6.4889 40 1 -2.8755 6.0091 -7.1846 41 1 -5.6369 6.2677 -7.0771 42 1 -5.2192 4.7287 -7.9359 43 1 -7.5905 5.2213 -6.1407 44 1 -7.1705 3.6733 -7.0051 45 1 -3.7032 3.7986 -3.6198 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000280509885.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:42:45 Heat of formation + Delta-G solvation = -37.181087 kcal Electronic energy + Delta-G solvation = -29324.332580 eV Core-core repulsion = 25115.351891 eV Total energy + Delta-G solvation = -4208.980689 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.75108 -40.83576 -39.26236 -38.09809 -37.05496 -35.69309 -34.85748 -32.50321 -32.45507 -31.48843 -30.17169 -28.32479 -27.53838 -25.36017 -24.72250 -23.34163 -22.51736 -22.09892 -20.79031 -19.71388 -19.30596 -18.85195 -17.94713 -17.34833 -17.26528 -17.02019 -16.61187 -16.41020 -15.78353 -15.71193 -15.21867 -14.89924 -14.09932 -14.01837 -13.86610 -13.75971 -13.48213 -13.41584 -13.38843 -12.76387 -12.66524 -12.54740 -12.49359 -12.37006 -12.25168 -11.81904 -11.80332 -11.29763 -10.98229 -10.95807 -10.77131 -10.51059 -10.48594 -10.19888 -9.95090 -9.70040 -9.26926 -9.13331 -8.68750 -8.42642 -8.31422 -8.14780 -6.63849 -4.27713 0.85042 0.98493 1.71726 2.12982 2.21374 2.59948 3.20490 3.35633 3.41722 3.43597 3.56799 3.63573 3.91722 3.96018 4.30249 4.39225 4.57125 4.70218 4.76631 4.87573 4.92977 5.01221 5.07573 5.10358 5.17882 5.19393 5.37875 5.61562 5.95018 5.97731 6.01461 6.09127 6.16607 6.20783 6.31256 6.37051 6.55272 6.68963 6.73808 6.79124 6.90289 6.98250 7.18478 7.26287 7.49674 7.59709 7.75580 8.17431 8.24496 8.47723 8.74932 9.39769 10.75428 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.021749 B = 0.002218 C = 0.002071 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1287.083552 B =12623.673151 C =13513.928881 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.139 4.139 3 C 0.246 3.754 4 H 0.047 0.953 5 C -0.623 4.623 6 H 0.065 0.935 7 C 0.045 3.955 8 N -0.890 5.890 9 Si 1.033 2.967 10 H -0.282 1.282 11 H -0.279 1.279 12 H -0.270 1.270 13 N -0.660 5.660 14 C 0.496 3.504 15 O -0.529 6.529 16 C 0.510 3.490 17 O -0.502 6.502 18 N -0.652 5.652 19 C 0.181 3.819 20 C -0.140 4.140 21 C -0.070 4.070 22 C -0.169 4.169 23 C 0.196 3.804 24 N -0.579 5.579 25 C 0.095 3.905 26 C -0.165 4.165 27 C 0.512 3.488 28 O -0.494 6.494 29 C -0.175 4.175 30 H 0.054 0.946 31 H 0.043 0.957 32 H 0.034 0.966 33 H 0.054 0.946 34 H 0.072 0.928 35 H 0.271 0.729 36 H 0.406 0.594 37 H 0.424 0.576 38 H 0.140 0.860 39 H 0.133 0.867 40 H 0.126 0.874 41 H 0.094 0.906 42 H 0.094 0.906 43 H 0.127 0.873 44 H 0.126 0.874 45 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.333 11.301 -18.710 31.250 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.178 4.178 3 C 0.143 3.857 4 H 0.065 0.935 5 C -0.661 4.661 6 H 0.084 0.916 7 C -0.163 4.163 8 N -0.522 5.522 9 Si 0.860 3.140 10 H -0.208 1.208 11 H -0.206 1.206 12 H -0.196 1.196 13 N -0.309 5.309 14 C 0.274 3.726 15 O -0.408 6.408 16 C 0.293 3.707 17 O -0.375 6.375 18 N -0.300 5.300 19 C 0.086 3.914 20 C -0.161 4.161 21 C -0.089 4.089 22 C -0.190 4.190 23 C 0.103 3.897 24 N -0.306 5.306 25 C -0.027 4.027 26 C -0.205 4.205 27 C 0.299 3.701 28 O -0.365 6.365 29 C -0.198 4.198 30 H 0.073 0.927 31 H 0.062 0.938 32 H 0.053 0.947 33 H 0.073 0.927 34 H 0.090 0.910 35 H 0.082 0.918 36 H 0.241 0.759 37 H 0.263 0.737 38 H 0.158 0.842 39 H 0.151 0.849 40 H 0.144 0.856 41 H 0.113 0.887 42 H 0.112 0.888 43 H 0.145 0.855 44 H 0.144 0.856 45 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -22.016 10.490 -16.410 29.395 hybrid contribution -0.038 0.436 -1.773 1.826 sum -22.054 10.926 -18.183 30.600 Atomic orbital electron populations 1.21900 0.97331 0.99299 1.01710 1.22357 0.93821 0.99384 1.02224 1.19269 0.95918 0.88531 0.81943 0.93546 1.22040 0.89113 1.48779 1.06145 0.91640 1.25657 0.96452 0.92035 1.02125 1.70855 1.10933 1.40457 1.29955 0.84213 0.75824 0.77752 0.76180 1.20764 1.20552 1.19553 1.46196 1.13709 1.52153 1.18825 1.19622 0.84277 0.81481 0.87188 1.90746 1.52786 1.59667 1.37597 1.20904 0.81568 0.78750 0.89518 1.90751 1.51726 1.56758 1.38242 1.43214 1.18126 1.56340 1.12297 1.17424 0.92419 0.94252 0.87341 1.21259 1.00885 0.98301 0.95653 1.20838 0.94689 0.97761 0.95602 1.20644 0.93384 1.04179 1.00769 1.17206 0.81713 0.97232 0.93594 1.47609 1.06680 1.52963 1.23316 1.22723 0.87790 1.01820 0.90330 1.23422 0.97634 1.03312 0.96141 1.22325 0.83400 0.77885 0.86456 1.90758 1.81196 1.38882 1.25702 1.20612 0.96014 1.05749 0.97393 0.92659 0.93825 0.94669 0.92703 0.90996 0.91845 0.75874 0.73748 0.84200 0.84872 0.85609 0.88733 0.88757 0.85513 0.85568 0.84471 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.87 8.49 37.16 0.32 -2.56 16 2 C -0.14 -3.07 5.32 -26.73 -0.14 -3.21 16 3 C 0.25 5.79 1.85 -69.08 -0.13 5.66 16 4 H 0.05 1.16 6.21 -51.92 -0.32 0.84 16 5 C -0.62 -16.67 8.99 -34.44 -0.31 -16.98 16 6 H 0.07 1.85 7.96 -52.49 -0.42 1.43 16 7 C 0.05 1.25 5.29 -17.82 -0.09 1.15 16 8 N -0.89 -26.16 13.70 55.43 0.76 -25.40 16 9 Si 1.03 24.47 26.37 -169.99 -4.48 19.99 16 10 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 11 H -0.28 -6.46 7.11 56.52 0.40 -6.05 16 12 H -0.27 -5.94 5.79 56.52 0.33 -5.62 16 13 N -0.66 -13.68 5.00 -55.39 -0.28 -13.96 16 14 C 0.50 9.50 6.38 -11.63 -0.07 9.43 16 15 O -0.53 -10.81 13.61 5.48 0.07 -10.73 16 16 C 0.51 8.58 7.71 -11.63 -0.09 8.49 16 17 O -0.50 -9.02 14.16 5.47 0.08 -8.94 16 18 N -0.65 -9.30 5.31 -10.31 -0.05 -9.36 16 19 C 0.18 2.42 6.22 -83.77 -0.52 1.90 16 20 C -0.14 -1.76 8.67 -39.34 -0.34 -2.10 16 21 C -0.07 -0.68 10.03 -39.64 -0.40 -1.07 16 22 C -0.17 -1.48 9.73 -39.35 -0.38 -1.87 16 23 C 0.20 2.06 6.75 -83.72 -0.56 1.50 16 24 N -0.58 -4.87 3.56 -138.60 -0.49 -5.36 16 25 C 0.10 0.31 8.33 -16.45 -0.14 0.17 16 26 C -0.16 -0.52 8.56 -28.01 -0.24 -0.76 16 27 C 0.51 4.75 8.89 -23.39 -0.21 4.54 16 28 O -0.49 -6.86 16.92 5.56 0.09 -6.76 16 29 C -0.17 -2.20 9.59 -39.19 -0.38 -2.58 16 30 H 0.05 1.12 7.75 -51.93 -0.40 0.72 16 31 H 0.04 0.85 5.68 -51.93 -0.30 0.56 16 32 H 0.03 0.62 8.14 -51.93 -0.42 0.19 16 33 H 0.05 1.19 8.14 -51.93 -0.42 0.77 16 34 H 0.07 1.64 5.00 -51.93 -0.26 1.38 16 35 H 0.27 7.91 8.73 -40.82 -0.36 7.56 16 36 H 0.41 8.09 8.00 -40.82 -0.33 7.77 16 37 H 0.42 5.51 8.30 -40.82 -0.34 5.17 16 38 H 0.14 1.91 6.51 -52.48 -0.34 1.57 16 39 H 0.13 0.95 8.06 -52.49 -0.42 0.53 16 40 H 0.13 0.74 7.84 -52.48 -0.41 0.33 16 41 H 0.09 0.13 8.14 -51.93 -0.42 -0.29 16 42 H 0.09 0.16 8.14 -51.93 -0.42 -0.27 16 43 H 0.13 0.15 8.14 -51.93 -0.42 -0.27 16 44 H 0.13 0.18 8.14 -51.93 -0.42 -0.24 16 45 H 0.14 1.87 6.88 -52.49 -0.36 1.50 16 LS Contribution 375.18 15.07 5.65 5.65 Total: -1.00 -33.87 375.18 -8.00 -41.87 By element: Atomic # 1 Polarization: 16.94 SS G_CDS: -5.66 Total: 11.28 kcal Atomic # 6 Polarization: 5.41 SS G_CDS: -3.69 Total: 1.72 kcal Atomic # 7 Polarization: -54.01 SS G_CDS: -0.07 Total: -54.07 kcal Atomic # 8 Polarization: -26.68 SS G_CDS: 0.25 Total: -26.44 kcal Atomic # 14 Polarization: 24.47 SS G_CDS: -4.48 Total: 19.99 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -33.87 -8.00 -41.87 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000280509885.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.687 kcal (2) G-P(sol) polarization free energy of solvation -33.867 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.180 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.001 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.868 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.181 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds