Wall clock time and date at job start Wed Apr 1 2020 03:42:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.47348 * 2 1 4 4 H 1.09009 * 109.46874 * 56.57733 * 3 2 1 5 5 C 1.50695 * 109.47180 * 176.57690 * 3 2 1 6 6 H 1.07994 * 120.00047 * 114.62551 * 5 3 2 7 7 C 1.37882 * 119.99890 * 294.62140 * 5 3 2 8 8 N 1.31512 * 119.99944 * 160.51571 * 7 5 3 9 9 Si 1.86803 * 120.00300 * 340.52160 * 7 5 3 10 10 H 1.48495 * 109.47136 * 179.97438 * 9 7 5 11 11 H 1.48498 * 109.46841 * 299.99980 * 9 7 5 12 12 H 1.48503 * 109.46721 * 59.99703 * 9 7 5 13 13 N 1.46502 * 109.47382 * 296.57919 * 3 2 1 14 14 C 1.34772 * 119.99912 * 84.99524 * 13 3 2 15 15 O 1.21364 * 120.00552 * 0.02562 * 14 13 3 16 16 C 1.49354 * 119.99737 * 180.02562 * 14 13 3 17 17 O 1.21384 * 120.00165 * 0.02562 * 16 14 13 18 18 N 1.34774 * 120.00126 * 180.02562 * 16 14 13 19 19 C 1.39731 * 120.00228 * 184.41144 * 18 16 14 20 20 C 1.38995 * 120.04328 * 321.22145 * 19 18 16 21 21 C 1.38123 * 120.06536 * 179.69387 * 20 19 18 22 22 C 1.38187 * 120.14293 * 0.59694 * 21 20 19 23 23 C 1.38911 * 120.08673 * 359.68182 * 22 21 20 24 24 N 1.39923 * 120.03630 * 180.02562 * 23 22 21 25 25 C 1.46353 * 134.66852 * 359.97061 * 24 23 22 26 26 C 1.52880 * 90.57450 * 179.97438 * 25 24 23 27 27 C 1.34606 * 134.66282 * 179.61215 * 24 23 22 28 28 O 1.21279 * 131.85145 * 0.02562 * 27 24 23 29 29 C 1.38760 * 119.93097 * 0.02562 * 23 22 21 30 30 H 1.08999 * 109.46665 * 299.99926 * 1 2 3 31 31 H 1.09002 * 109.47142 * 59.99414 * 1 2 3 32 32 H 1.08996 * 109.47294 * 179.97438 * 1 2 3 33 33 H 1.08999 * 109.46665 * 240.00074 * 2 1 3 34 34 H 1.09002 * 109.46933 * 120.00074 * 2 1 3 35 35 H 0.97010 * 119.99754 * 354.93042 * 8 7 5 36 36 H 0.97003 * 119.99602 * 265.00368 * 13 3 2 37 37 H 0.97000 * 120.00387 * 4.41701 * 18 16 14 38 38 H 1.08003 * 119.96502 * 359.97438 * 20 19 18 39 39 H 1.07997 * 119.92740 * 180.29388 * 21 20 19 40 40 H 1.08006 * 119.95524 * 179.69761 * 22 21 20 41 41 H 1.09000 * 113.05007 * 295.43811 * 25 24 23 42 42 H 1.08999 * 113.05150 * 64.52001 * 25 24 23 43 43 H 1.08996 * 114.38035 * 113.39819 * 26 25 24 44 44 H 1.09002 * 114.37505 * 246.56423 * 26 25 24 45 45 H 1.07997 * 120.06871 * 180.02562 * 29 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6275 1.9737 0.8578 5 6 3.5446 1.4433 0.0848 6 1 4.1319 1.8162 -0.7412 7 6 4.1715 0.9678 1.2171 8 7 5.4352 0.6071 1.1668 9 14 3.2259 0.8360 2.8228 10 1 4.1194 0.3001 3.8808 11 1 2.7371 2.1804 3.2211 12 1 2.0694 -0.0779 2.6424 13 7 1.6203 2.1089 -1.2352 14 6 0.4005 2.6767 -1.3135 15 8 -0.3500 2.6363 -0.3606 16 6 -0.0277 3.3557 -2.5730 17 8 0.7227 3.3957 -3.5263 18 7 -1.2473 3.9239 -2.6512 19 6 -1.6840 4.4779 -3.8574 20 6 -0.7939 5.1758 -4.6653 21 6 -1.2235 5.7181 -5.8607 22 6 -2.5417 5.5796 -6.2516 23 6 -3.4379 4.8883 -5.4462 24 7 -4.7722 4.7481 -5.8432 25 6 -5.5518 5.1836 -7.0028 26 6 -6.8048 4.5226 -6.4280 27 6 -5.8586 4.1529 -5.3166 28 8 -6.0212 3.5279 -4.2900 29 6 -3.0084 4.3368 -4.2475 30 1 -0.3632 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3634 -1.0276 -0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5139 0.8900 35 1 5.9057 0.6055 0.3184 36 1 2.2202 2.1414 -1.9968 37 1 -1.8220 3.9484 -1.8701 38 1 0.2358 5.2902 -4.3601 39 1 -0.5289 6.2559 -6.4889 40 1 -2.8755 6.0091 -7.1846 41 1 -5.6369 6.2677 -7.0771 42 1 -5.2192 4.7287 -7.9359 43 1 -7.5905 5.2213 -6.1407 44 1 -7.1705 3.6733 -7.0051 45 1 -3.7032 3.7986 -3.6198 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000280509885.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:42:44 Heat of formation + Delta-G solvation = -62.411127 kcal Electronic energy + Delta-G solvation = -29325.426637 eV Core-core repulsion = 25115.351891 eV Total energy + Delta-G solvation = -4210.074746 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.42624 -42.05696 -40.54202 -39.30125 -37.82680 -37.37781 -36.08457 -34.52412 -33.23126 -33.13385 -31.14719 -29.42462 -28.91367 -26.50505 -25.47493 -24.37229 -24.01893 -23.19861 -22.11893 -21.41533 -20.45512 -20.15888 -19.22861 -18.61745 -17.94797 -17.80288 -17.68721 -17.41367 -17.07274 -16.93081 -16.75819 -16.05137 -15.59614 -15.26763 -15.13187 -14.77749 -14.56472 -14.54924 -14.31585 -14.30360 -14.11806 -14.03305 -13.63906 -13.31558 -13.06804 -12.88208 -12.72535 -12.67532 -12.55017 -12.46785 -12.31568 -11.82604 -11.80189 -11.49020 -11.19663 -11.17187 -11.04129 -10.74950 -10.55087 -10.07532 -9.63355 -8.95291 -8.84693 -6.48504 -0.16385 0.12184 0.44910 1.16534 1.45077 1.46462 1.50191 1.69963 1.75375 2.02785 2.41877 2.55988 2.72236 2.81788 2.94130 3.33995 3.61677 3.81491 4.01277 4.09555 4.20658 4.23960 4.24895 4.32100 4.34823 4.43812 4.47636 4.64775 4.73312 4.80332 4.89188 5.02478 5.05600 5.07379 5.08386 5.14981 5.18112 5.35523 5.38915 5.46324 5.49448 5.56004 5.67377 5.84170 5.93332 5.96798 6.35960 6.45495 6.61232 6.92033 6.95102 7.26181 8.53901 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.021749 B = 0.002218 C = 0.002071 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1287.083552 B =12623.673151 C =13513.928881 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.137 4.137 3 C 0.251 3.749 4 H 0.037 0.963 5 C -0.623 4.623 6 H 0.039 0.961 7 C 0.001 3.999 8 N -0.920 5.920 9 Si 1.067 2.933 10 H -0.282 1.282 11 H -0.271 1.271 12 H -0.242 1.242 13 N -0.667 5.667 14 C 0.499 3.501 15 O -0.540 6.540 16 C 0.517 3.483 17 O -0.516 6.516 18 N -0.640 5.640 19 C 0.156 3.844 20 C -0.158 4.158 21 C -0.063 4.063 22 C -0.149 4.149 23 C 0.189 3.811 24 N -0.588 5.588 25 C 0.097 3.903 26 C -0.138 4.138 27 C 0.487 3.513 28 O -0.557 6.557 29 C -0.191 4.191 30 H 0.050 0.950 31 H 0.040 0.960 32 H 0.059 0.941 33 H 0.053 0.947 34 H 0.066 0.934 35 H 0.260 0.740 36 H 0.408 0.592 37 H 0.428 0.572 38 H 0.124 0.876 39 H 0.164 0.836 40 H 0.168 0.832 41 H 0.122 0.878 42 H 0.118 0.882 43 H 0.152 0.848 44 H 0.149 0.851 45 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.390 12.646 -21.332 35.491 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.175 4.175 3 C 0.147 3.853 4 H 0.055 0.945 5 C -0.660 4.660 6 H 0.057 0.943 7 C -0.200 4.200 8 N -0.554 5.554 9 Si 0.888 3.112 10 H -0.208 1.208 11 H -0.196 1.196 12 H -0.166 1.166 13 N -0.316 5.316 14 C 0.279 3.721 15 O -0.419 6.419 16 C 0.299 3.701 17 O -0.391 6.391 18 N -0.287 5.287 19 C 0.062 3.938 20 C -0.179 4.179 21 C -0.082 4.082 22 C -0.170 4.170 23 C 0.095 3.905 24 N -0.314 5.314 25 C -0.023 4.023 26 C -0.177 4.177 27 C 0.278 3.722 28 O -0.433 6.433 29 C -0.214 4.214 30 H 0.070 0.930 31 H 0.059 0.941 32 H 0.078 0.922 33 H 0.072 0.928 34 H 0.085 0.915 35 H 0.069 0.931 36 H 0.244 0.756 37 H 0.267 0.733 38 H 0.142 0.858 39 H 0.182 0.818 40 H 0.185 0.815 41 H 0.140 0.860 42 H 0.136 0.864 43 H 0.169 0.831 44 H 0.166 0.834 45 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -25.128 11.880 -19.108 33.729 hybrid contribution 0.831 0.124 -1.122 1.402 sum -24.297 12.004 -20.230 33.819 Atomic orbital electron populations 1.21800 0.95339 1.00860 1.01354 1.22257 0.95514 0.97860 1.01893 1.19018 0.93683 0.89793 0.82817 0.94493 1.22185 0.91008 1.47672 1.05150 0.94323 1.26862 0.96499 0.91461 1.05216 1.70958 1.12099 1.42986 1.29317 0.83795 0.75744 0.78830 0.72832 1.20771 1.19592 1.16634 1.46025 1.14610 1.52859 1.18116 1.19913 0.83448 0.80806 0.87915 1.90730 1.52941 1.59873 1.38332 1.20309 0.82399 0.79086 0.88298 1.90745 1.52365 1.57695 1.38294 1.43080 1.17039 1.55388 1.13175 1.17576 0.93118 0.95827 0.87289 1.21289 1.00059 0.99514 0.97053 1.21211 0.95792 0.96692 0.94479 1.21047 0.92343 1.02199 1.01398 1.17458 0.83488 0.96646 0.92929 1.48059 1.05759 1.52569 1.24971 1.23112 0.86207 1.03686 0.89264 1.23576 0.97431 1.04220 0.92522 1.23769 0.84996 0.76728 0.86725 1.90716 1.82431 1.41557 1.28632 1.20543 0.95307 1.06844 0.98658 0.93045 0.94123 0.92153 0.92838 0.91546 0.93127 0.75615 0.73349 0.85804 0.81821 0.81490 0.86039 0.86377 0.83056 0.83368 0.86503 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.21 8.49 71.98 0.61 -4.60 16 2 C -0.14 -5.93 5.32 30.59 0.16 -5.77 16 3 C 0.25 11.88 1.85 44.24 0.08 11.96 16 4 H 0.04 1.85 6.21 -2.38 -0.01 1.83 16 5 C -0.62 -34.17 8.99 25.60 0.23 -33.94 16 6 H 0.04 2.28 7.96 -2.91 -0.02 2.26 16 7 C 0.00 0.08 5.29 84.66 0.45 0.53 16 8 N -0.92 -55.51 13.70 21.45 0.29 -55.22 16 9 Si 1.07 49.20 26.37 68.60 1.81 51.01 16 10 H -0.28 -12.97 7.11 99.48 0.71 -12.27 16 11 H -0.27 -12.02 7.11 99.48 0.71 -11.32 16 12 H -0.24 -10.05 5.79 99.48 0.58 -9.47 16 13 N -0.67 -28.19 5.00 -447.53 -2.24 -30.43 16 14 C 0.50 19.43 6.38 87.24 0.56 19.98 16 15 O -0.54 -22.12 13.61 -3.29 -0.04 -22.17 16 16 C 0.52 17.84 7.71 87.24 0.67 18.51 16 17 O -0.52 -19.02 14.16 -3.35 -0.05 -19.06 16 18 N -0.64 -18.90 5.31 -304.88 -1.62 -20.52 16 19 C 0.16 4.26 6.22 38.20 0.24 4.50 16 20 C -0.16 -3.92 8.67 22.42 0.19 -3.73 16 21 C -0.06 -1.06 10.03 22.23 0.22 -0.83 16 22 C -0.15 -2.09 9.73 22.42 0.22 -1.87 16 23 C 0.19 3.67 6.75 38.14 0.26 3.93 16 24 N -0.59 -8.49 3.56 -710.91 -2.53 -11.03 16 25 C 0.10 0.16 8.33 78.42 0.65 0.82 16 26 C -0.14 -0.34 8.56 29.77 0.25 -0.08 16 27 C 0.49 8.51 8.89 79.69 0.71 9.22 16 28 O -0.56 -16.11 16.92 -3.03 -0.05 -16.16 16 29 C -0.19 -4.91 9.59 22.53 0.22 -4.69 16 30 H 0.05 2.00 7.75 -2.39 -0.02 1.98 16 31 H 0.04 1.56 5.68 -2.39 -0.01 1.54 16 32 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 33 H 0.05 2.31 8.14 -2.39 -0.02 2.29 16 34 H 0.07 2.94 5.00 -2.39 -0.01 2.93 16 35 H 0.26 15.77 8.73 -92.70 -0.81 14.96 16 36 H 0.41 16.84 8.00 -92.71 -0.74 16.10 16 37 H 0.43 11.66 8.30 -92.71 -0.77 10.89 16 38 H 0.12 3.45 6.51 -2.91 -0.02 3.43 16 39 H 0.16 1.71 8.06 -2.91 -0.02 1.69 16 40 H 0.17 0.97 7.84 -2.91 -0.02 0.95 16 41 H 0.12 -0.37 8.14 -2.39 -0.02 -0.39 16 42 H 0.12 -0.28 8.14 -2.39 -0.02 -0.30 16 43 H 0.15 -0.31 8.14 -2.39 -0.02 -0.33 16 44 H 0.15 -0.22 8.14 -2.39 -0.02 -0.24 16 45 H 0.12 3.44 6.88 -2.91 -0.02 3.42 16 Total: -1.00 -78.41 375.18 0.68 -77.73 By element: Atomic # 1 Polarization: 32.53 SS G_CDS: -0.61 Total: 31.92 kcal Atomic # 6 Polarization: 8.20 SS G_CDS: 5.73 Total: 13.93 kcal Atomic # 7 Polarization: -111.10 SS G_CDS: -6.09 Total: -117.19 kcal Atomic # 8 Polarization: -57.25 SS G_CDS: -0.14 Total: -57.39 kcal Atomic # 14 Polarization: 49.20 SS G_CDS: 1.81 Total: 51.01 kcal Total: -78.41 0.68 -77.73 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000280509885.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.318 kcal (2) G-P(sol) polarization free energy of solvation -78.413 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.095 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.684 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.729 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.411 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds