Wall clock time and date at job start Wed Apr 1 2020 04:00:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17394 * 1 3 3 C 1.47207 * 179.97438 * 2 1 4 4 N 1.46500 * 109.46820 * 213.03408 * 3 2 1 5 5 C 1.36938 * 120.00136 * 264.34707 * 4 3 2 6 6 H 1.07997 * 120.00098 * 196.59885 * 5 4 3 7 7 C 1.38817 * 119.99647 * 16.60818 * 5 4 3 8 8 N 1.31622 * 119.99900 * 22.37163 * 7 5 4 9 9 Si 1.86791 * 119.99967 * 202.37647 * 7 5 4 10 10 H 1.48504 * 109.47499 * 59.99793 * 9 7 5 11 11 H 1.48500 * 109.47314 * 180.02562 * 9 7 5 12 12 H 1.48512 * 109.47156 * 299.99886 * 9 7 5 13 13 C 1.46501 * 120.00074 * 84.35840 * 4 3 2 14 14 C 1.50703 * 109.46879 * 269.99602 * 13 4 3 15 15 O 1.21287 * 119.99710 * 359.97438 * 14 13 4 16 16 N 1.34771 * 120.00448 * 179.97438 * 14 13 4 17 17 C 1.46493 * 120.00430 * 179.97438 * 16 14 13 18 18 C 1.50703 * 109.47479 * 180.02562 * 17 16 14 19 19 C 1.38269 * 119.94430 * 270.30199 * 18 17 16 20 20 C 1.38138 * 120.05687 * 180.29587 * 19 18 17 21 21 C 1.38737 * 119.94303 * 359.42665 * 20 19 18 22 22 O 1.35898 * 120.05297 * 180.29855 * 21 20 19 23 23 C 1.42903 * 116.99783 * 179.97438 * 22 21 20 24 24 C 1.50697 * 109.47114 * 180.02562 * 23 22 21 25 25 N 1.34782 * 119.99672 * 179.97438 * 24 23 22 26 26 O 1.21274 * 120.00314 * 0.02562 * 24 23 22 27 27 C 1.38727 * 119.88650 * 0.27012 * 21 20 19 28 28 C 1.38146 * 119.94605 * 0.02562 * 27 21 20 29 29 H 4.40637 * 5.51455 * 179.97438 * 4 1 2 30 30 H 1.08991 * 109.46974 * 93.03251 * 3 2 1 31 31 H 1.09004 * 109.47141 * 333.03260 * 3 2 1 32 32 H 0.97001 * 119.99785 * 179.97438 * 8 7 5 33 33 H 1.08994 * 109.47359 * 149.99506 * 13 4 3 34 34 H 1.09001 * 109.47149 * 29.99318 * 13 4 3 35 35 H 0.97002 * 119.99937 * 0.02562 * 16 14 13 36 36 H 1.08994 * 109.47139 * 60.00058 * 17 16 14 37 37 H 1.09001 * 109.47080 * 300.00046 * 17 16 14 38 38 H 1.08001 * 119.97101 * 0.02562 * 19 18 17 39 39 H 1.08003 * 120.02808 * 179.69475 * 20 19 18 40 40 H 1.09007 * 109.47342 * 300.00062 * 23 22 21 41 41 H 1.09001 * 109.47263 * 59.99909 * 23 22 21 42 42 H 0.96999 * 120.00065 * 0.02562 * 25 24 23 43 43 H 0.97002 * 119.99533 * 179.97438 * 25 24 23 44 44 H 1.07999 * 120.02613 * 180.02562 * 27 21 20 45 45 H 1.08000 * 119.96894 * 179.97438 * 28 27 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1338 1.1588 0.7530 5 6 3.4716 2.3109 0.0943 6 1 4.0724 3.0595 0.5892 7 6 3.0415 2.5165 -1.2094 8 7 1.9888 1.8709 -1.6647 9 14 3.9570 3.7094 -2.3177 10 1 5.3648 3.2621 -2.4706 11 1 3.3023 3.7493 -3.6500 12 1 3.9314 5.0657 -1.7133 13 6 3.2603 1.0845 2.2106 14 6 1.9704 1.5297 2.8502 15 8 1.0375 1.8755 2.1566 16 7 1.8535 1.5435 4.1927 17 6 0.5998 1.9769 4.8144 18 6 0.7298 1.9003 6.3139 19 6 0.3939 0.7345 6.9771 20 6 0.5063 0.6638 8.3521 21 6 0.9681 1.7598 9.0664 22 8 1.0854 1.6906 10.4186 23 6 1.5680 2.8570 11.0884 24 6 1.6314 2.5948 12.5710 25 7 2.0610 3.5598 13.4082 26 8 1.2968 1.5153 13.0108 27 6 1.3105 2.9262 8.3980 28 6 1.1904 2.9939 7.0234 29 1 -1.0502 -0.0002 -0.0003 30 1 3.0093 0.0552 -1.0261 31 1 3.0098 -0.9151 0.4660 32 1 1.6880 2.0149 -2.5756 33 1 4.0717 1.7342 2.5385 34 1 3.4760 0.0573 2.5046 35 1 2.5997 1.2673 4.7474 36 1 -0.2119 1.3277 4.4862 37 1 0.3847 3.0043 4.5208 38 1 0.0391 -0.1201 6.4201 39 1 0.2391 -0.2455 8.8702 40 1 2.5644 3.1015 10.7201 41 1 0.8943 3.6919 10.8952 42 1 2.3289 4.4231 13.0564 43 1 2.1014 3.3911 14.3626 44 1 1.6706 3.7806 8.9518 45 1 1.4564 3.9019 6.5027 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000281427487.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:00:51 Heat of formation + Delta-G solvation = 12.316854 kcal Electronic energy + Delta-G solvation = -28445.455520 eV Core-core repulsion = 24238.621223 eV Total energy + Delta-G solvation = -4206.834297 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -40.80104 -39.70020 -38.77420 -37.68057 -35.62792 -34.32833 -34.01067 -31.46390 -31.38670 -31.24175 -30.64284 -28.93366 -27.30312 -25.90394 -25.03699 -23.27147 -22.06797 -21.50444 -20.98543 -19.63800 -18.79737 -18.20976 -17.39617 -16.95510 -16.84443 -16.59553 -16.37206 -16.06630 -15.45250 -15.10860 -14.76277 -14.73032 -14.60282 -14.24554 -14.18905 -13.73314 -13.53657 -13.24655 -13.07494 -12.94309 -12.80979 -12.23404 -12.12348 -11.62527 -11.39873 -11.36569 -11.22450 -11.13044 -10.82619 -10.66311 -10.51344 -10.34323 -10.25252 -9.95669 -9.25912 -9.11226 -8.71007 -8.62388 -8.40802 -8.38270 -8.20150 -6.95460 -5.70695 -3.12600 1.06801 1.11843 1.97796 2.19268 3.31782 3.38057 3.42440 3.47373 3.48371 3.68114 4.05118 4.13540 4.36746 4.38844 4.45051 4.57429 4.58829 4.60269 4.70108 4.72327 5.08766 5.15814 5.33830 5.41374 5.62176 5.68687 5.73722 5.85180 5.98362 6.03258 6.06757 6.10705 6.12346 6.17767 6.30917 6.44421 6.48454 6.62791 6.77179 7.01422 7.04176 7.29466 7.60394 7.61262 7.77984 8.16688 8.35105 9.12543 9.24174 9.48691 9.80453 10.24511 11.31675 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.022047 B = 0.001798 C = 0.001717 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1269.714538 B =15570.066842 C =16303.667168 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.288 4.288 2 C -0.095 4.095 3 C 0.270 3.730 4 N -0.558 5.558 5 C -0.267 4.267 6 H 0.075 0.925 7 C 0.007 3.993 8 N -0.876 5.876 9 Si 0.902 3.098 10 H -0.283 1.283 11 H -0.292 1.292 12 H -0.285 1.285 13 C 0.129 3.871 14 C 0.464 3.536 15 O -0.495 6.495 16 N -0.747 5.747 17 C 0.165 3.835 18 C -0.130 4.130 19 C -0.061 4.061 20 C -0.147 4.147 21 C 0.126 3.874 22 O -0.292 6.292 23 C 0.039 3.961 24 C 0.520 3.480 25 N -0.851 5.851 26 O -0.518 6.518 27 C -0.211 4.211 28 C -0.062 4.062 29 H 0.183 0.817 30 H 0.097 0.903 31 H 0.035 0.965 32 H 0.254 0.746 33 H 0.076 0.924 34 H 0.068 0.932 35 H 0.391 0.609 36 H 0.067 0.933 37 H 0.066 0.934 38 H 0.133 0.867 39 H 0.133 0.867 40 H 0.095 0.905 41 H 0.095 0.905 42 H 0.404 0.596 43 H 0.409 0.591 44 H 0.127 0.873 45 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.736 2.684 26.838 27.027 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.308 4.308 2 C -0.098 4.098 3 C 0.145 3.855 4 N -0.275 5.275 5 C -0.396 4.396 6 H 0.092 0.908 7 C -0.193 4.193 8 N -0.518 5.518 9 Si 0.732 3.268 10 H -0.210 1.210 11 H -0.217 1.217 12 H -0.211 1.211 13 C -0.003 4.003 14 C 0.248 3.752 15 O -0.365 6.365 16 N -0.405 5.405 17 C 0.041 3.959 18 C -0.131 4.131 19 C -0.080 4.080 20 C -0.166 4.166 21 C 0.080 3.920 22 O -0.204 6.204 23 C -0.040 4.040 24 C 0.303 3.697 25 N -0.418 5.418 26 O -0.392 6.392 27 C -0.230 4.230 28 C -0.080 4.080 29 H 0.201 0.799 30 H 0.115 0.885 31 H 0.053 0.947 32 H 0.064 0.936 33 H 0.094 0.906 34 H 0.086 0.914 35 H 0.223 0.777 36 H 0.085 0.915 37 H 0.084 0.916 38 H 0.151 0.849 39 H 0.151 0.849 40 H 0.113 0.887 41 H 0.113 0.887 42 H 0.232 0.768 43 H 0.241 0.759 44 H 0.145 0.855 45 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 0.691 2.021 26.249 26.335 hybrid contribution 0.347 1.569 -0.001 1.607 sum 1.038 3.590 26.248 26.512 Atomic orbital electron populations 1.23947 0.95120 1.05862 1.05855 1.23925 0.95002 0.95268 0.95578 1.17875 0.83250 0.86655 0.97739 1.44219 1.72816 1.12159 0.98333 1.19116 1.26397 0.98470 0.95568 0.90755 1.24954 0.96130 0.98951 0.99251 1.70188 1.20974 1.44395 1.16223 0.86387 0.79539 0.80798 0.80111 1.20950 1.21748 1.21104 1.21070 0.93089 0.99768 0.86380 1.23459 0.93147 0.78014 0.80615 1.90766 1.40132 1.44129 1.61488 1.46637 1.15160 1.71131 1.07551 1.19974 0.88667 1.00765 0.86539 1.19989 1.02870 0.94320 0.95894 1.20976 0.96632 0.97484 0.92886 1.20436 1.04645 0.97944 0.93545 1.19032 0.96661 0.94725 0.81548 1.86145 1.81051 1.36132 1.17086 1.22427 1.01715 0.89255 0.90578 1.20085 0.76999 0.84462 0.88167 1.43661 1.70109 1.16919 1.11103 1.90821 1.46309 1.23970 1.78055 1.21182 1.08439 0.97647 0.95750 1.20920 0.95839 0.98348 0.92927 0.79928 0.88493 0.94733 0.93572 0.90561 0.91366 0.77674 0.91477 0.91559 0.84890 0.84924 0.88685 0.88742 0.76787 0.75924 0.85536 0.85366 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.29 -7.29 18.78 29.55 0.56 -6.73 16 2 C -0.09 -2.46 10.03 -37.12 -0.37 -2.84 16 3 C 0.27 6.54 5.45 -6.83 -0.04 6.50 16 4 N -0.56 -13.67 2.09 -177.95 -0.37 -14.04 16 5 C -0.27 -7.21 9.66 -15.06 -0.15 -7.35 16 6 H 0.07 1.95 7.90 -52.49 -0.41 1.54 16 7 C 0.01 0.21 4.85 -17.43 -0.08 0.12 16 8 N -0.88 -25.71 9.49 55.49 0.53 -25.18 16 9 Si 0.90 21.71 29.61 -169.99 -5.03 16.68 16 10 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 11 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 12 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 13 C 0.13 2.50 6.18 -5.19 -0.03 2.47 16 14 C 0.46 9.36 7.81 -10.99 -0.09 9.28 16 15 O -0.49 -12.75 14.44 5.55 0.08 -12.67 16 16 N -0.75 -11.15 5.55 -61.48 -0.34 -11.49 16 17 C 0.16 2.29 5.79 -5.20 -0.03 2.26 16 18 C -0.13 -1.43 5.25 -104.60 -0.55 -1.98 16 19 C -0.06 -0.63 9.69 -39.61 -0.38 -1.02 16 20 C -0.15 -1.50 9.99 -39.43 -0.39 -1.90 16 21 C 0.13 1.25 6.69 -39.22 -0.26 0.99 16 22 O -0.29 -2.99 9.67 -39.33 -0.38 -3.37 16 23 C 0.04 0.23 5.22 36.00 0.19 0.42 16 24 C 0.52 3.77 8.18 -10.98 -0.09 3.68 16 25 N -0.85 -2.18 8.87 31.22 0.28 -1.90 16 26 O -0.52 -6.58 17.34 -14.35 -0.25 -6.83 16 27 C -0.21 -1.80 9.04 -39.43 -0.36 -2.16 16 28 C -0.06 -0.60 9.69 -39.61 -0.38 -0.98 16 29 H 0.18 4.05 7.80 -54.08 -0.42 3.63 16 30 H 0.10 2.53 6.41 -51.93 -0.33 2.19 16 31 H 0.03 0.72 7.97 -51.93 -0.41 0.30 16 32 H 0.25 7.33 8.31 -40.82 -0.34 6.99 16 33 H 0.08 1.34 8.02 -51.93 -0.42 0.92 16 34 H 0.07 1.12 7.95 -51.93 -0.41 0.70 16 35 H 0.39 4.68 8.46 -40.82 -0.35 4.33 16 36 H 0.07 1.01 8.09 -51.93 -0.42 0.59 16 37 H 0.07 1.00 8.08 -51.93 -0.42 0.58 16 38 H 0.13 1.25 8.06 -52.49 -0.42 0.83 16 39 H 0.13 1.24 8.06 -52.48 -0.42 0.82 16 40 H 0.10 0.33 7.66 -51.92 -0.40 -0.07 16 41 H 0.09 0.32 7.66 -51.93 -0.40 -0.07 16 42 H 0.40 -0.33 8.83 -40.82 -0.36 -0.69 16 43 H 0.41 0.79 8.93 -40.82 -0.36 0.43 16 44 H 0.13 0.70 6.30 -52.49 -0.33 0.37 16 45 H 0.13 1.14 8.06 -52.49 -0.42 0.71 16 LS Contribution 393.26 15.07 5.93 5.93 Total: -1.00 -39.56 393.26 -7.88 -47.44 By element: Atomic # 1 Polarization: 10.53 SS G_CDS: -5.85 Total: 4.68 kcal Atomic # 6 Polarization: 3.22 SS G_CDS: -2.46 Total: 0.75 kcal Atomic # 7 Polarization: -52.70 SS G_CDS: 0.09 Total: -52.61 kcal Atomic # 8 Polarization: -22.32 SS G_CDS: -0.55 Total: -22.87 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.03 Total: 16.68 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -39.56 -7.88 -47.44 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281427487.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.756 kcal (2) G-P(sol) polarization free energy of solvation -39.558 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.198 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.882 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.439 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.317 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds