Wall clock time and date at job start Wed Apr 1 2020 04:00:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17394 * 1 3 3 C 1.47207 * 179.97438 * 2 1 4 4 N 1.46500 * 109.46820 * 213.03408 * 3 2 1 5 5 C 1.36938 * 120.00136 * 264.34707 * 4 3 2 6 6 H 1.07997 * 120.00098 * 196.59885 * 5 4 3 7 7 C 1.38817 * 119.99647 * 16.60818 * 5 4 3 8 8 N 1.31622 * 119.99900 * 22.37163 * 7 5 4 9 9 Si 1.86791 * 119.99967 * 202.37647 * 7 5 4 10 10 H 1.48504 * 109.47499 * 59.99793 * 9 7 5 11 11 H 1.48500 * 109.47314 * 180.02562 * 9 7 5 12 12 H 1.48512 * 109.47156 * 299.99886 * 9 7 5 13 13 C 1.46501 * 120.00074 * 84.35840 * 4 3 2 14 14 C 1.50703 * 109.46879 * 269.99602 * 13 4 3 15 15 O 1.21287 * 119.99710 * 359.97438 * 14 13 4 16 16 N 1.34771 * 120.00448 * 179.97438 * 14 13 4 17 17 C 1.46493 * 120.00430 * 179.97438 * 16 14 13 18 18 C 1.50703 * 109.47479 * 180.02562 * 17 16 14 19 19 C 1.38269 * 119.94430 * 270.30199 * 18 17 16 20 20 C 1.38138 * 120.05687 * 180.29587 * 19 18 17 21 21 C 1.38737 * 119.94303 * 359.42665 * 20 19 18 22 22 O 1.35898 * 120.05297 * 180.29855 * 21 20 19 23 23 C 1.42903 * 116.99783 * 179.97438 * 22 21 20 24 24 C 1.50697 * 109.47114 * 180.02562 * 23 22 21 25 25 N 1.34782 * 119.99672 * 179.97438 * 24 23 22 26 26 O 1.21274 * 120.00314 * 0.02562 * 24 23 22 27 27 C 1.38727 * 119.88650 * 0.27012 * 21 20 19 28 28 C 1.38146 * 119.94605 * 0.02562 * 27 21 20 29 29 H 4.40637 * 5.51455 * 179.97438 * 4 1 2 30 30 H 1.08991 * 109.46974 * 93.03251 * 3 2 1 31 31 H 1.09004 * 109.47141 * 333.03260 * 3 2 1 32 32 H 0.97001 * 119.99785 * 179.97438 * 8 7 5 33 33 H 1.08994 * 109.47359 * 149.99506 * 13 4 3 34 34 H 1.09001 * 109.47149 * 29.99318 * 13 4 3 35 35 H 0.97002 * 119.99937 * 0.02562 * 16 14 13 36 36 H 1.08994 * 109.47139 * 60.00058 * 17 16 14 37 37 H 1.09001 * 109.47080 * 300.00046 * 17 16 14 38 38 H 1.08001 * 119.97101 * 0.02562 * 19 18 17 39 39 H 1.08003 * 120.02808 * 179.69475 * 20 19 18 40 40 H 1.09007 * 109.47342 * 300.00062 * 23 22 21 41 41 H 1.09001 * 109.47263 * 59.99909 * 23 22 21 42 42 H 0.96999 * 120.00065 * 0.02562 * 25 24 23 43 43 H 0.97002 * 119.99533 * 179.97438 * 25 24 23 44 44 H 1.07999 * 120.02613 * 180.02562 * 27 21 20 45 45 H 1.08000 * 119.96894 * 179.97438 * 28 27 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1338 1.1588 0.7530 5 6 3.4716 2.3109 0.0943 6 1 4.0724 3.0595 0.5892 7 6 3.0415 2.5165 -1.2094 8 7 1.9888 1.8709 -1.6647 9 14 3.9570 3.7094 -2.3177 10 1 5.3648 3.2621 -2.4706 11 1 3.3023 3.7493 -3.6500 12 1 3.9314 5.0657 -1.7133 13 6 3.2603 1.0845 2.2106 14 6 1.9704 1.5297 2.8502 15 8 1.0375 1.8755 2.1566 16 7 1.8535 1.5435 4.1927 17 6 0.5998 1.9769 4.8144 18 6 0.7298 1.9003 6.3139 19 6 0.3939 0.7345 6.9771 20 6 0.5063 0.6638 8.3521 21 6 0.9681 1.7598 9.0664 22 8 1.0854 1.6906 10.4186 23 6 1.5680 2.8570 11.0884 24 6 1.6314 2.5948 12.5710 25 7 2.0610 3.5598 13.4082 26 8 1.2968 1.5153 13.0108 27 6 1.3105 2.9262 8.3980 28 6 1.1904 2.9939 7.0234 29 1 -1.0502 -0.0002 -0.0003 30 1 3.0093 0.0552 -1.0261 31 1 3.0098 -0.9151 0.4660 32 1 1.6880 2.0149 -2.5756 33 1 4.0717 1.7342 2.5385 34 1 3.4760 0.0573 2.5046 35 1 2.5997 1.2673 4.7474 36 1 -0.2119 1.3277 4.4862 37 1 0.3847 3.0043 4.5208 38 1 0.0391 -0.1201 6.4201 39 1 0.2391 -0.2455 8.8702 40 1 2.5644 3.1015 10.7201 41 1 0.8943 3.6919 10.8952 42 1 2.3289 4.4231 13.0564 43 1 2.1014 3.3911 14.3626 44 1 1.6706 3.7806 8.9518 45 1 1.4564 3.9019 6.5027 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000281427487.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:00:50 Heat of formation + Delta-G solvation = -17.287520 kcal Electronic energy + Delta-G solvation = -28446.739262 eV Core-core repulsion = 24238.621223 eV Total energy + Delta-G solvation = -4208.118039 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.46730 -40.52716 -40.07261 -38.55244 -37.40540 -35.36672 -34.79342 -33.40047 -33.05788 -32.14693 -31.71345 -29.62834 -28.75194 -27.82155 -26.24944 -23.96811 -23.72576 -22.38806 -21.60968 -21.15822 -19.42602 -19.33346 -18.64886 -18.25730 -17.99257 -17.41145 -17.36642 -17.05193 -16.80320 -16.50840 -16.04195 -15.85978 -15.42243 -15.35029 -15.23923 -15.04937 -14.82544 -14.68146 -14.40831 -13.94233 -13.80047 -13.48161 -13.42699 -13.23574 -13.09424 -12.62565 -12.46995 -12.40056 -12.22760 -12.05876 -11.91289 -11.87147 -11.12495 -10.89638 -10.75420 -10.62954 -10.50024 -10.17685 -9.99028 -9.81251 -9.21959 -8.86351 -7.76192 -5.18633 0.29254 0.37394 1.47545 1.50699 1.52613 1.59549 1.70346 2.11058 2.39047 2.49858 2.62114 2.72182 2.84957 2.93334 3.37667 3.72850 3.77589 3.87749 3.92148 3.93000 4.10148 4.12666 4.19683 4.27943 4.36946 4.43101 4.57767 4.68627 4.75691 4.80235 4.85014 4.98770 5.07902 5.22363 5.31782 5.35243 5.65511 5.67117 5.68369 5.74003 5.74786 5.83192 6.27290 6.30018 6.44399 6.88737 7.13718 7.25136 7.53446 7.69967 7.89510 8.26840 9.24666 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.022047 B = 0.001798 C = 0.001717 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1269.714538 B =15570.066842 C =16303.667168 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.306 4.306 2 C -0.112 4.112 3 C 0.268 3.732 4 N -0.573 5.573 5 C -0.266 4.266 6 H 0.079 0.921 7 C -0.050 4.050 8 N -0.910 5.910 9 Si 0.965 3.035 10 H -0.270 1.270 11 H -0.303 1.303 12 H -0.284 1.284 13 C 0.123 3.877 14 C 0.465 3.535 15 O -0.558 6.558 16 N -0.724 5.724 17 C 0.172 3.828 18 C -0.140 4.140 19 C -0.062 4.062 20 C -0.161 4.161 21 C 0.125 3.875 22 O -0.318 6.318 23 C 0.031 3.969 24 C 0.516 3.484 25 N -0.826 5.826 26 O -0.585 6.585 27 C -0.201 4.201 28 C -0.062 4.062 29 H 0.202 0.798 30 H 0.072 0.928 31 H 0.072 0.928 32 H 0.243 0.757 33 H 0.100 0.900 34 H 0.105 0.895 35 H 0.409 0.591 36 H 0.051 0.949 37 H 0.053 0.947 38 H 0.135 0.865 39 H 0.134 0.866 40 H 0.126 0.874 41 H 0.125 0.875 42 H 0.423 0.577 43 H 0.414 0.586 44 H 0.163 0.837 45 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.545 4.117 29.233 29.734 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.325 4.325 2 C -0.115 4.115 3 C 0.143 3.857 4 N -0.291 5.291 5 C -0.396 4.396 6 H 0.097 0.903 7 C -0.246 4.246 8 N -0.554 5.554 9 Si 0.794 3.206 10 H -0.196 1.196 11 H -0.230 1.230 12 H -0.210 1.210 13 C -0.007 4.007 14 C 0.250 3.750 15 O -0.433 6.433 16 N -0.380 5.380 17 C 0.048 3.952 18 C -0.141 4.141 19 C -0.081 4.081 20 C -0.180 4.180 21 C 0.079 3.921 22 O -0.232 6.232 23 C -0.046 4.046 24 C 0.300 3.700 25 N -0.393 5.393 26 O -0.464 6.464 27 C -0.220 4.220 28 C -0.080 4.080 29 H 0.219 0.781 30 H 0.090 0.910 31 H 0.090 0.910 32 H 0.052 0.948 33 H 0.118 0.882 34 H 0.123 0.877 35 H 0.245 0.755 36 H 0.069 0.931 37 H 0.071 0.929 38 H 0.153 0.847 39 H 0.152 0.848 40 H 0.144 0.856 41 H 0.143 0.857 42 H 0.256 0.744 43 H 0.246 0.754 44 H 0.181 0.819 45 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 2.576 3.507 28.752 29.079 hybrid contribution -0.183 1.169 -0.472 1.274 sum 2.393 4.676 28.280 28.763 Atomic orbital electron populations 1.24603 0.96146 1.05982 1.05812 1.24532 0.95988 0.95276 0.95660 1.17931 0.82441 0.88230 0.97103 1.44313 1.72876 1.11387 1.00511 1.19457 1.25418 0.98879 0.95856 0.90287 1.25673 0.97040 1.01181 1.00743 1.70375 1.22728 1.46637 1.15651 0.85397 0.78738 0.78818 0.77696 1.19589 1.22965 1.21046 1.21331 0.93115 1.02541 0.83745 1.23339 0.92510 0.77241 0.81884 1.90755 1.42059 1.47269 1.63262 1.46262 1.16230 1.69308 1.06219 1.19867 0.87395 0.99418 0.88546 1.19711 1.04981 0.95466 0.93901 1.20971 0.96600 0.97443 0.93058 1.20549 1.05221 0.98633 0.93557 1.19161 0.96136 0.95000 0.81763 1.86120 1.81336 1.38558 1.17137 1.22793 1.04023 0.88634 0.89189 1.20469 0.76222 0.84070 0.89204 1.43500 1.67871 1.16852 1.11038 1.90798 1.49734 1.26732 1.79154 1.21461 1.07156 0.98152 0.95204 1.21068 0.95281 0.98096 0.93596 0.78051 0.90977 0.90983 0.94791 0.88224 0.87739 0.75493 0.93090 0.92865 0.84677 0.84812 0.85608 0.85718 0.74448 0.75368 0.81944 0.84346 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.31 -15.74 18.78 74.32 1.40 -14.34 16 2 C -0.11 -5.87 10.03 31.13 0.31 -5.56 16 3 C 0.27 12.94 5.45 84.58 0.46 13.41 16 4 N -0.57 -27.58 2.09 -716.90 -1.50 -29.08 16 5 C -0.27 -14.28 9.66 84.03 0.81 -13.47 16 6 H 0.08 4.06 7.90 -2.91 -0.02 4.04 16 7 C -0.05 -2.80 4.85 84.86 0.41 -2.39 16 8 N -0.91 -54.72 9.49 21.65 0.21 -54.51 16 9 Si 0.96 45.22 29.61 68.60 2.03 47.25 16 10 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 11 H -0.30 -14.61 7.11 99.48 0.71 -13.90 16 12 H -0.28 -13.12 7.11 99.48 0.71 -12.42 16 13 C 0.12 4.50 6.18 85.63 0.53 5.03 16 14 C 0.47 18.29 7.81 87.66 0.68 18.98 16 15 O -0.56 -29.01 14.44 -3.05 -0.04 -29.06 16 16 N -0.72 -20.43 5.55 -466.80 -2.59 -23.02 16 17 C 0.17 4.67 5.79 85.64 0.50 5.16 16 18 C -0.14 -2.87 5.25 -19.85 -0.10 -2.97 16 19 C -0.06 -1.22 9.69 22.25 0.22 -1.00 16 20 C -0.16 -3.10 9.99 22.37 0.22 -2.88 16 21 C 0.12 2.20 6.69 22.51 0.15 2.35 16 22 O -0.32 -5.91 9.67 -73.36 -0.71 -6.62 16 23 C 0.03 0.26 5.22 71.24 0.37 0.64 16 24 C 0.52 6.54 8.18 87.66 0.72 7.25 16 25 N -0.83 -2.06 8.87 -173.53 -1.54 -3.60 16 26 O -0.58 -14.85 17.34 16.03 0.28 -14.57 16 27 C -0.20 -2.70 9.04 22.37 0.20 -2.50 16 28 C -0.06 -1.03 9.69 22.25 0.22 -0.81 16 29 H 0.20 9.08 7.80 -4.41 -0.03 9.05 16 30 H 0.07 3.83 6.41 -2.39 -0.02 3.81 16 31 H 0.07 2.86 7.97 -2.38 -0.02 2.84 16 32 H 0.24 14.51 8.31 -92.71 -0.77 13.74 16 33 H 0.10 3.17 8.02 -2.39 -0.02 3.15 16 34 H 0.10 3.05 7.95 -2.39 -0.02 3.04 16 35 H 0.41 8.68 8.46 -92.71 -0.78 7.89 16 36 H 0.05 1.56 8.09 -2.39 -0.02 1.54 16 37 H 0.05 1.60 8.08 -2.39 -0.02 1.58 16 38 H 0.14 2.48 8.06 -2.91 -0.02 2.46 16 39 H 0.13 2.46 8.06 -2.91 -0.02 2.43 16 40 H 0.13 0.28 7.66 -2.38 -0.02 0.26 16 41 H 0.13 0.29 7.66 -2.39 -0.02 0.28 16 42 H 0.42 -2.26 8.83 -92.71 -0.82 -3.08 16 43 H 0.41 0.75 8.93 -92.71 -0.83 -0.08 16 44 H 0.16 0.92 6.30 -2.91 -0.02 0.90 16 45 H 0.14 2.02 8.06 -2.91 -0.02 2.00 16 Total: -1.00 -89.84 393.26 1.85 -87.99 By element: Atomic # 1 Polarization: 19.70 SS G_CDS: -1.37 Total: 18.32 kcal Atomic # 6 Polarization: -0.20 SS G_CDS: 7.09 Total: 6.90 kcal Atomic # 7 Polarization: -104.79 SS G_CDS: -5.42 Total: -110.21 kcal Atomic # 8 Polarization: -49.77 SS G_CDS: -0.48 Total: -50.25 kcal Atomic # 14 Polarization: 45.22 SS G_CDS: 2.03 Total: 47.25 kcal Total: -89.84 1.85 -87.99 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281427487.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.702 kcal (2) G-P(sol) polarization free energy of solvation -89.842 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.140 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.853 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.990 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.288 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds