Wall clock time and date at job start Wed Apr 1 2020 03:33:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17400 * 1 3 3 C 1.47196 * 179.97438 * 2 1 4 4 N 1.46494 * 109.47061 * 312.54322 * 3 2 1 5 5 C 1.36790 * 120.00152 * 274.68308 * 4 3 2 6 6 H 1.07995 * 119.99708 * 128.77850 * 5 4 3 7 7 C 1.39105 * 119.99686 * 308.78151 * 5 4 3 8 8 N 1.31320 * 120.00121 * 4.12811 * 7 5 4 9 9 Si 1.86802 * 119.99567 * 184.12625 * 7 5 4 10 10 H 1.48497 * 109.47156 * 90.00244 * 9 7 5 11 11 H 1.48504 * 109.47042 * 209.99752 * 9 7 5 12 12 H 1.48501 * 109.47481 * 330.00085 * 9 7 5 13 13 C 1.34774 * 120.00492 * 94.68654 * 4 3 2 14 14 O 1.21573 * 119.99602 * 355.00643 * 13 4 3 15 15 C 1.47992 * 120.00465 * 175.00398 * 13 4 3 16 16 C 1.39287 * 119.69347 * 184.97547 * 15 13 4 17 17 C 1.38698 * 119.20358 * 179.97438 * 16 15 13 18 18 C 1.38385 * 118.57784 * 359.75153 * 17 16 15 19 19 C 1.39354 * 119.31371 * 0.49101 * 18 17 16 20 20 N 1.39388 * 119.62501 * 179.77149 * 19 18 17 21 21 C 1.34778 * 119.99936 * 20.36398 * 20 19 18 22 22 O 1.21495 * 120.00054 * 356.23964 * 21 20 19 23 23 O 1.34637 * 119.99950 * 176.24610 * 21 20 19 24 24 C 1.45200 * 117.00069 * 179.97438 * 23 21 20 25 25 C 1.52998 * 109.46989 * 59.99692 * 24 23 21 26 26 C 1.52999 * 109.47037 * 179.97438 * 24 23 21 27 27 C 1.52995 * 109.46882 * 299.99946 * 24 23 21 28 28 N 1.32032 * 120.75059 * 359.49612 * 19 18 17 29 29 H 4.40636 * 5.51355 * 179.97438 * 4 1 2 30 30 H 1.08993 * 109.47142 * 192.53992 * 3 2 1 31 31 H 1.09002 * 109.47213 * 72.54438 * 3 2 1 32 32 H 0.97007 * 120.00132 * 179.97438 * 8 7 5 33 33 H 1.08006 * 120.39563 * 359.95666 * 16 15 13 34 34 H 1.08004 * 120.71118 * 180.02562 * 17 16 15 35 35 H 1.08004 * 120.34713 * 180.26294 * 18 17 16 36 36 H 0.96995 * 120.00076 * 200.36413 * 20 19 18 37 37 H 1.09000 * 109.47177 * 60.00403 * 25 24 23 38 38 H 1.09000 * 109.47320 * 180.02562 * 25 24 23 39 39 H 1.09005 * 109.47156 * 299.99833 * 25 24 23 40 40 H 1.09004 * 109.47136 * 60.00366 * 26 24 23 41 41 H 1.08998 * 109.46809 * 179.97438 * 26 24 23 42 42 H 1.08997 * 109.47152 * 299.99966 * 26 24 23 43 43 H 1.08995 * 109.47588 * 60.00029 * 27 24 23 44 44 H 1.09003 * 109.47006 * 180.02562 * 27 24 23 45 45 H 1.09004 * 109.47141 * 299.99542 * 27 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1347 -0.9330 1.0176 5 6 3.2713 -0.5209 2.3148 6 1 2.8321 -1.0992 3.1141 7 6 3.9759 0.6431 2.6041 8 7 4.4403 1.3892 1.6284 9 14 4.2614 1.1446 4.3808 10 1 5.5333 0.5502 4.8647 11 1 4.3413 2.6248 4.4705 12 1 3.1369 0.6577 5.2195 13 6 3.4498 -2.1980 0.6758 14 8 3.2434 -2.5912 -0.4559 15 6 4.0472 -3.1084 1.6781 16 6 4.4661 -4.3796 1.2925 17 6 5.0250 -5.2243 2.2400 18 6 5.1516 -4.7687 3.5405 19 6 4.7075 -3.4872 3.8608 20 7 4.8274 -3.0235 5.1698 21 6 5.7079 -3.6008 6.0112 22 8 6.3478 -4.5685 5.6506 23 8 5.8782 -3.1051 7.2513 24 6 6.8426 -3.7776 8.1034 25 6 8.2241 -3.7284 7.4476 26 6 6.8984 -3.0769 9.4623 27 6 6.4220 -5.2357 8.2976 28 7 4.1793 -2.7053 2.9372 29 1 -1.0499 0.0000 0.0003 30 1 3.0088 1.0039 0.2231 31 1 3.0095 -0.3074 -0.9804 32 1 4.9314 2.2011 1.8302 33 1 4.3567 -4.7037 0.2680 34 1 5.3585 -6.2148 1.9677 35 1 5.5866 -5.4010 4.3004 36 1 4.2772 -2.2853 5.4751 37 1 8.5238 -2.6896 7.3092 38 1 8.9480 -4.2336 8.0869 39 1 8.1846 -4.2273 6.4792 40 1 5.9143 -3.1117 9.9297 41 1 7.6221 -3.5820 10.1021 42 1 7.1983 -2.0382 9.3235 43 1 6.3825 -5.7346 7.3294 44 1 7.1457 -5.7404 8.9376 45 1 5.4378 -5.2707 8.7649 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000281605049.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:33:09 Heat of formation + Delta-G solvation = 14.167503 kcal Electronic energy + Delta-G solvation = -30685.682676 eV Core-core repulsion = 26478.928629 eV Total energy + Delta-G solvation = -4206.754047 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.24178 -39.89742 -38.39503 -37.20435 -35.20806 -34.86654 -33.98189 -32.52808 -32.02636 -31.08439 -29.67512 -27.62707 -27.56420 -26.72706 -25.02868 -23.98751 -23.33002 -21.74247 -20.44371 -19.62399 -18.42714 -18.33818 -17.41384 -16.83018 -16.46115 -16.26633 -15.86594 -15.51572 -15.08666 -14.73638 -14.71287 -14.39741 -14.30853 -14.03654 -13.71423 -13.44529 -13.14950 -12.75550 -12.66779 -12.54161 -12.25598 -12.19921 -12.11529 -11.97072 -11.92506 -11.69414 -11.49026 -11.27679 -11.23383 -10.92082 -10.61566 -10.46633 -10.45625 -9.83009 -9.70137 -9.38030 -9.27242 -9.17778 -9.06222 -8.38584 -8.03656 -7.48830 -6.36650 -4.13380 1.31073 1.66258 1.91492 2.72586 3.11798 3.17177 3.20233 3.49213 3.72031 3.76484 3.89562 4.12629 4.49084 4.54733 4.59257 4.66659 4.68712 4.96370 5.05521 5.25283 5.26154 5.33322 5.41967 5.44513 5.47868 5.56116 5.59956 5.64824 5.65974 5.73011 5.79398 6.08095 6.11514 6.16024 6.28244 6.44386 6.48318 6.65894 6.70569 6.80793 7.12293 7.14893 7.25461 7.56828 7.87408 8.21716 8.37756 8.49662 8.52274 9.05205 9.31790 9.77621 10.64315 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.012970 B = 0.003743 C = 0.003111 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2158.299171 B = 7478.022914 C = 8999.358695 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.260 4.260 2 C -0.147 4.147 3 C 0.195 3.805 4 N -0.411 5.411 5 C -0.286 4.286 6 H 0.104 0.896 7 C 0.045 3.955 8 N -0.875 5.875 9 Si 0.916 3.084 10 H -0.275 1.275 11 H -0.284 1.284 12 H -0.266 1.266 13 C 0.518 3.482 14 O -0.594 6.594 15 C 0.142 3.858 16 C -0.146 4.146 17 C -0.076 4.076 18 C -0.184 4.184 19 C 0.337 3.663 20 N -0.629 5.629 21 C 0.662 3.338 22 O -0.550 6.550 23 O -0.358 6.358 24 C 0.135 3.865 25 C -0.186 4.186 26 C -0.141 4.141 27 C -0.184 4.184 28 N -0.430 5.430 29 H 0.207 0.793 30 H 0.141 0.859 31 H 0.082 0.918 32 H 0.271 0.729 33 H 0.142 0.858 34 H 0.135 0.865 35 H 0.170 0.830 36 H 0.420 0.580 37 H 0.061 0.939 38 H 0.071 0.929 39 H 0.089 0.911 40 H 0.067 0.933 41 H 0.081 0.919 42 H 0.068 0.932 43 H 0.089 0.911 44 H 0.071 0.929 45 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.313 -8.739 13.044 16.283 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.279 4.279 2 C -0.148 4.148 3 C 0.074 3.926 4 N -0.127 5.127 5 C -0.415 4.415 6 H 0.122 0.878 7 C -0.160 4.160 8 N -0.512 5.512 9 Si 0.742 3.258 10 H -0.200 1.200 11 H -0.210 1.210 12 H -0.191 1.191 13 C 0.306 3.694 14 O -0.479 6.479 15 C 0.002 3.998 16 C -0.168 4.168 17 C -0.102 4.102 18 C -0.206 4.206 19 C 0.108 3.892 20 N -0.280 5.280 21 C 0.416 3.584 22 O -0.439 6.439 23 O -0.272 6.272 24 C 0.099 3.901 25 C -0.243 4.243 26 C -0.199 4.199 27 C -0.241 4.241 28 N -0.145 5.145 29 H 0.224 0.776 30 H 0.158 0.842 31 H 0.100 0.900 32 H 0.082 0.918 33 H 0.160 0.840 34 H 0.153 0.847 35 H 0.187 0.813 36 H 0.257 0.743 37 H 0.080 0.920 38 H 0.090 0.910 39 H 0.108 0.892 40 H 0.086 0.914 41 H 0.100 0.900 42 H 0.087 0.913 43 H 0.108 0.892 44 H 0.090 0.910 45 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 4.423 -8.310 12.652 15.769 hybrid contribution 0.124 0.074 0.931 0.942 sum 4.547 -8.236 13.582 16.522 Atomic orbital electron populations 1.24563 0.95605 1.04139 1.03558 1.24257 0.95346 0.97539 0.97679 1.18880 0.81852 0.99153 0.92750 1.43254 1.52671 1.07962 1.08779 1.19692 1.31522 1.07973 0.82342 0.87842 1.25590 0.94804 0.96597 0.99014 1.69544 1.35321 1.14551 1.31817 0.86105 0.79155 0.77682 0.82856 1.20045 1.20975 1.19064 1.18191 0.81616 0.83672 0.85889 1.90645 1.59728 1.76832 1.20732 1.20961 0.96875 0.92501 0.89456 1.22063 0.99307 0.94029 1.01383 1.21384 0.96862 0.99592 0.92375 1.22783 1.02854 0.96028 0.98976 1.18239 0.97501 0.89620 0.83882 1.41664 1.39646 1.37767 1.08890 1.17743 0.79080 0.81167 0.80371 1.90733 1.49389 1.27500 1.76269 1.86338 1.60327 1.57536 1.23012 1.22144 0.86930 0.92406 0.88641 1.22541 0.94907 1.03204 1.03627 1.21870 1.03225 1.01436 0.93320 1.22527 1.01892 0.94968 1.04700 1.68136 1.14442 1.31240 1.00723 0.77645 0.84239 0.89956 0.91807 0.84044 0.84688 0.81342 0.74253 0.91978 0.91042 0.89188 0.91363 0.90047 0.91309 0.89244 0.91045 0.92048 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.26 -5.21 19.25 29.55 0.57 -4.64 16 2 C -0.15 -3.38 13.64 -37.12 -0.51 -3.88 16 3 C 0.20 4.76 5.55 -6.83 -0.04 4.73 16 4 N -0.41 -10.51 2.44 -118.98 -0.29 -10.80 16 5 C -0.29 -7.22 7.05 -15.02 -0.11 -7.32 16 6 H 0.10 2.59 6.49 -52.49 -0.34 2.25 16 7 C 0.04 1.12 5.40 -17.45 -0.09 1.03 16 8 N -0.87 -22.67 11.07 55.50 0.61 -22.06 16 9 Si 0.92 19.56 29.56 -169.99 -5.02 14.54 16 10 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 11 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 12 H -0.27 -5.41 7.11 56.52 0.40 -5.01 16 13 C 0.52 13.03 7.61 -12.26 -0.09 12.93 16 14 O -0.59 -15.67 15.88 5.30 0.08 -15.58 16 15 C 0.14 3.14 6.66 -83.03 -0.55 2.59 16 16 C -0.15 -2.71 9.63 -39.02 -0.38 -3.08 16 17 C -0.08 -1.19 10.16 -39.36 -0.40 -1.59 16 18 C -0.18 -3.05 8.89 -39.11 -0.35 -3.40 16 19 C 0.34 6.26 7.52 -154.87 -1.16 5.10 16 20 N -0.63 -10.39 5.42 -15.85 -0.09 -10.47 16 21 C 0.66 10.11 7.96 54.06 0.43 10.54 16 22 O -0.55 -8.53 8.53 -19.27 -0.16 -8.70 16 23 O -0.36 -4.84 9.94 -40.32 -0.40 -5.24 16 24 C 0.14 1.43 1.13 -90.62 -0.10 1.33 16 25 C -0.19 -1.96 8.37 37.16 0.31 -1.64 16 26 C -0.14 -1.12 8.85 37.16 0.33 -0.79 16 27 C -0.18 -1.75 8.37 37.16 0.31 -1.44 16 28 N -0.43 -9.21 6.58 -8.94 -0.06 -9.26 16 29 H 0.21 3.15 7.80 -54.10 -0.42 2.73 16 30 H 0.14 3.53 5.56 -51.93 -0.29 3.24 16 31 H 0.08 1.99 7.36 -51.93 -0.38 1.61 16 32 H 0.27 6.69 8.31 -40.82 -0.34 6.35 16 33 H 0.14 2.50 7.64 -52.48 -0.40 2.10 16 34 H 0.14 1.61 8.06 -52.48 -0.42 1.18 16 35 H 0.17 2.64 5.13 -53.04 -0.27 2.36 16 36 H 0.42 6.64 8.93 -40.82 -0.36 6.27 16 37 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.09 1.15 5.88 -51.93 -0.31 0.84 16 40 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 41 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 42 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 43 H 0.09 1.02 5.88 -51.93 -0.31 0.72 16 44 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 45 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 LS Contribution 380.81 15.07 5.74 5.74 Total: -1.00 -29.99 380.81 -7.02 -37.00 By element: Atomic # 1 Polarization: 20.00 SS G_CDS: -5.60 Total: 14.40 kcal Atomic # 6 Polarization: 12.27 SS G_CDS: -1.83 Total: 10.44 kcal Atomic # 7 Polarization: -52.77 SS G_CDS: 0.18 Total: -52.59 kcal Atomic # 8 Polarization: -29.05 SS G_CDS: -0.48 Total: -29.53 kcal Atomic # 14 Polarization: 19.56 SS G_CDS: -5.02 Total: 14.54 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -29.99 -7.02 -37.00 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281605049.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.172 kcal (2) G-P(sol) polarization free energy of solvation -29.988 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.183 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.016 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.004 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.168 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds