Wall clock time and date at job start Wed Apr 1 2020 03:33:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17400 * 1 3 3 C 1.47196 * 179.97438 * 2 1 4 4 N 1.46494 * 109.47061 * 312.54322 * 3 2 1 5 5 C 1.36790 * 120.00152 * 274.68308 * 4 3 2 6 6 H 1.07995 * 119.99708 * 128.77850 * 5 4 3 7 7 C 1.39105 * 119.99686 * 308.78151 * 5 4 3 8 8 N 1.31320 * 120.00121 * 4.12811 * 7 5 4 9 9 Si 1.86802 * 119.99567 * 184.12625 * 7 5 4 10 10 H 1.48497 * 109.47156 * 90.00244 * 9 7 5 11 11 H 1.48504 * 109.47042 * 209.99752 * 9 7 5 12 12 H 1.48501 * 109.47481 * 330.00085 * 9 7 5 13 13 C 1.34774 * 120.00492 * 94.68654 * 4 3 2 14 14 O 1.21573 * 119.99602 * 355.00643 * 13 4 3 15 15 C 1.47992 * 120.00465 * 175.00398 * 13 4 3 16 16 C 1.39287 * 119.69347 * 184.97547 * 15 13 4 17 17 C 1.38698 * 119.20358 * 179.97438 * 16 15 13 18 18 C 1.38385 * 118.57784 * 359.75153 * 17 16 15 19 19 C 1.39354 * 119.31371 * 0.49101 * 18 17 16 20 20 N 1.39388 * 119.62501 * 179.77149 * 19 18 17 21 21 C 1.34778 * 119.99936 * 20.36398 * 20 19 18 22 22 O 1.21495 * 120.00054 * 356.23964 * 21 20 19 23 23 O 1.34637 * 119.99950 * 176.24610 * 21 20 19 24 24 C 1.45200 * 117.00069 * 179.97438 * 23 21 20 25 25 C 1.52998 * 109.46989 * 59.99692 * 24 23 21 26 26 C 1.52999 * 109.47037 * 179.97438 * 24 23 21 27 27 C 1.52995 * 109.46882 * 299.99946 * 24 23 21 28 28 N 1.32032 * 120.75059 * 359.49612 * 19 18 17 29 29 H 4.40636 * 5.51355 * 179.97438 * 4 1 2 30 30 H 1.08993 * 109.47142 * 192.53992 * 3 2 1 31 31 H 1.09002 * 109.47213 * 72.54438 * 3 2 1 32 32 H 0.97007 * 120.00132 * 179.97438 * 8 7 5 33 33 H 1.08006 * 120.39563 * 359.95666 * 16 15 13 34 34 H 1.08004 * 120.71118 * 180.02562 * 17 16 15 35 35 H 1.08004 * 120.34713 * 180.26294 * 18 17 16 36 36 H 0.96995 * 120.00076 * 200.36413 * 20 19 18 37 37 H 1.09000 * 109.47177 * 60.00403 * 25 24 23 38 38 H 1.09000 * 109.47320 * 180.02562 * 25 24 23 39 39 H 1.09005 * 109.47156 * 299.99833 * 25 24 23 40 40 H 1.09004 * 109.47136 * 60.00366 * 26 24 23 41 41 H 1.08998 * 109.46809 * 179.97438 * 26 24 23 42 42 H 1.08997 * 109.47152 * 299.99966 * 26 24 23 43 43 H 1.08995 * 109.47588 * 60.00029 * 27 24 23 44 44 H 1.09003 * 109.47006 * 180.02562 * 27 24 23 45 45 H 1.09004 * 109.47141 * 299.99542 * 27 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1347 -0.9330 1.0176 5 6 3.2713 -0.5209 2.3148 6 1 2.8321 -1.0992 3.1141 7 6 3.9759 0.6431 2.6041 8 7 4.4403 1.3892 1.6284 9 14 4.2614 1.1446 4.3808 10 1 5.5333 0.5502 4.8647 11 1 4.3413 2.6248 4.4705 12 1 3.1369 0.6577 5.2195 13 6 3.4498 -2.1980 0.6758 14 8 3.2434 -2.5912 -0.4559 15 6 4.0472 -3.1084 1.6781 16 6 4.4661 -4.3796 1.2925 17 6 5.0250 -5.2243 2.2400 18 6 5.1516 -4.7687 3.5405 19 6 4.7075 -3.4872 3.8608 20 7 4.8274 -3.0235 5.1698 21 6 5.7079 -3.6008 6.0112 22 8 6.3478 -4.5685 5.6506 23 8 5.8782 -3.1051 7.2513 24 6 6.8426 -3.7776 8.1034 25 6 8.2241 -3.7284 7.4476 26 6 6.8984 -3.0769 9.4623 27 6 6.4220 -5.2357 8.2976 28 7 4.1793 -2.7053 2.9372 29 1 -1.0499 0.0000 0.0003 30 1 3.0088 1.0039 0.2231 31 1 3.0095 -0.3074 -0.9804 32 1 4.9314 2.2011 1.8302 33 1 4.3567 -4.7037 0.2680 34 1 5.3585 -6.2148 1.9677 35 1 5.5866 -5.4010 4.3004 36 1 4.2772 -2.2853 5.4751 37 1 8.5238 -2.6896 7.3092 38 1 8.9480 -4.2336 8.0869 39 1 8.1846 -4.2273 6.4792 40 1 5.9143 -3.1117 9.9297 41 1 7.6221 -3.5820 10.1021 42 1 7.1983 -2.0382 9.3235 43 1 6.3825 -5.7346 7.3294 44 1 7.1457 -5.7404 8.9376 45 1 5.4378 -5.2707 8.7649 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000281605049.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:33:09 Heat of formation + Delta-G solvation = -2.999317 kcal Electronic energy + Delta-G solvation = -30686.427085 eV Core-core repulsion = 26478.928629 eV Total energy + Delta-G solvation = -4207.498456 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.43358 -41.36229 -40.04021 -38.41004 -37.05275 -36.15539 -34.93305 -34.25897 -33.63904 -32.83749 -31.13441 -28.53853 -28.33859 -28.28489 -26.87814 -25.22884 -24.92274 -23.02938 -21.74577 -21.09806 -20.11902 -19.52676 -18.96969 -18.25242 -17.76453 -17.52303 -17.38385 -16.93245 -16.66816 -16.25622 -16.12008 -15.91370 -15.63076 -15.39901 -14.93637 -14.87453 -14.52270 -14.12291 -14.07741 -13.84998 -13.56878 -13.30005 -13.22741 -13.18084 -13.06405 -12.88294 -12.86713 -12.70118 -12.60526 -12.16953 -12.13912 -11.80056 -11.45580 -11.44822 -11.17497 -10.99997 -10.98924 -10.84919 -10.68577 -10.09786 -9.58462 -9.29052 -8.25350 -6.08673 -0.19311 0.28211 0.77327 1.39868 1.41192 1.51244 1.51950 1.78175 2.01633 2.04659 2.34570 2.74614 2.93367 3.01322 3.16216 3.62019 3.72417 3.78199 3.80045 3.94043 3.96041 4.17101 4.20541 4.27224 4.50120 4.60673 4.65413 4.70846 4.77900 4.79332 4.87487 4.89715 5.03582 5.07353 5.16915 5.17736 5.20493 5.23685 5.30865 5.33374 5.48720 5.60984 5.80470 5.95060 5.98742 6.49700 6.80423 6.94419 7.03779 7.15703 7.43004 7.86999 8.75964 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.012970 B = 0.003743 C = 0.003111 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2158.299171 B = 7478.022914 C = 8999.358695 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.216 4.216 3 C 0.199 3.801 4 N -0.423 5.423 5 C -0.290 4.290 6 H 0.102 0.898 7 C 0.004 3.996 8 N -0.905 5.905 9 Si 0.970 3.030 10 H -0.276 1.276 11 H -0.284 1.284 12 H -0.249 1.249 13 C 0.505 3.495 14 O -0.620 6.620 15 C 0.108 3.892 16 C -0.145 4.145 17 C -0.055 4.055 18 C -0.172 4.172 19 C 0.330 3.670 20 N -0.633 5.633 21 C 0.664 3.336 22 O -0.553 6.553 23 O -0.362 6.362 24 C 0.122 3.878 25 C -0.183 4.183 26 C -0.138 4.138 27 C -0.179 4.179 28 N -0.456 5.456 29 H 0.256 0.744 30 H 0.125 0.875 31 H 0.068 0.932 32 H 0.271 0.729 33 H 0.147 0.853 34 H 0.183 0.817 35 H 0.185 0.815 36 H 0.421 0.579 37 H 0.054 0.946 38 H 0.098 0.902 39 H 0.065 0.935 40 H 0.071 0.929 41 H 0.108 0.892 42 H 0.064 0.936 43 H 0.068 0.932 44 H 0.096 0.904 45 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.427 -10.534 15.770 19.475 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.218 4.218 3 C 0.077 3.923 4 N -0.139 5.139 5 C -0.420 4.420 6 H 0.120 0.880 7 C -0.197 4.197 8 N -0.544 5.544 9 Si 0.794 3.206 10 H -0.201 1.201 11 H -0.209 1.209 12 H -0.172 1.172 13 C 0.295 3.705 14 O -0.507 6.507 15 C -0.030 4.030 16 C -0.167 4.167 17 C -0.081 4.081 18 C -0.194 4.194 19 C 0.099 3.901 20 N -0.284 5.284 21 C 0.419 3.581 22 O -0.443 6.443 23 O -0.277 6.277 24 C 0.086 3.914 25 C -0.240 4.240 26 C -0.194 4.194 27 C -0.236 4.236 28 N -0.172 5.172 29 H 0.272 0.728 30 H 0.142 0.858 31 H 0.086 0.914 32 H 0.081 0.919 33 H 0.165 0.835 34 H 0.201 0.799 35 H 0.202 0.798 36 H 0.258 0.742 37 H 0.073 0.927 38 H 0.117 0.883 39 H 0.084 0.916 40 H 0.091 0.909 41 H 0.127 0.873 42 H 0.083 0.917 43 H 0.087 0.913 44 H 0.115 0.885 45 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 4.531 -10.101 15.401 18.967 hybrid contribution 0.093 0.510 0.131 0.535 sum 4.625 -9.591 15.532 18.831 Atomic orbital electron populations 1.25606 0.96417 1.00645 1.00077 1.24287 0.95821 1.00751 1.00905 1.18605 0.83521 0.98202 0.91932 1.43474 1.52993 1.08311 1.09100 1.19759 1.31878 1.08079 0.82241 0.88036 1.26304 0.94478 0.96455 1.02493 1.69673 1.36284 1.14980 1.33491 0.85264 0.79381 0.77139 0.78840 1.20150 1.20946 1.17193 1.18760 0.81258 0.84016 0.86492 1.90588 1.60821 1.77381 1.21948 1.20696 0.99287 0.93527 0.89518 1.22190 0.99109 0.93038 1.02371 1.21850 0.94507 1.00758 0.90979 1.23080 1.01418 0.95139 0.99790 1.18448 0.97334 0.90194 0.84145 1.41699 1.40198 1.38065 1.08467 1.17741 0.78624 0.80969 0.80805 1.90713 1.49338 1.27656 1.76564 1.86367 1.61119 1.57971 1.22222 1.22616 0.86216 0.93398 0.89177 1.22519 0.95744 1.02753 1.03021 1.21920 1.04346 1.01251 0.91928 1.22486 1.02915 0.94122 1.04086 1.67857 1.15698 1.32674 1.00967 0.72800 0.85815 0.91410 0.91893 0.83543 0.79927 0.79811 0.74156 0.92705 0.88323 0.91559 0.90949 0.87311 0.91719 0.91279 0.88540 0.91697 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -8.10 19.25 74.32 1.43 -6.66 16 2 C -0.22 -10.20 13.64 31.12 0.42 -9.77 16 3 C 0.20 10.32 5.55 84.57 0.47 10.79 16 4 N -0.42 -22.70 2.44 -648.60 -1.58 -24.28 16 5 C -0.29 -15.19 7.05 84.13 0.59 -14.60 16 6 H 0.10 5.24 6.49 -2.91 -0.02 5.22 16 7 C 0.00 0.21 5.40 84.98 0.46 0.67 16 8 N -0.91 -48.93 11.07 21.69 0.24 -48.69 16 9 Si 0.97 40.58 29.56 68.60 2.03 42.61 16 10 H -0.28 -11.49 7.11 99.48 0.71 -10.78 16 11 H -0.28 -11.76 7.11 99.48 0.71 -11.06 16 12 H -0.25 -9.57 7.11 99.48 0.71 -8.86 16 13 C 0.50 26.57 7.61 86.83 0.66 27.23 16 14 O -0.62 -34.23 15.88 -3.94 -0.06 -34.29 16 15 C 0.11 4.90 6.66 41.83 0.28 5.18 16 16 C -0.14 -5.29 9.63 22.63 0.22 -5.07 16 17 C -0.06 -1.58 10.16 22.41 0.23 -1.35 16 18 C -0.17 -5.35 8.89 22.57 0.20 -5.15 16 19 C 0.33 12.04 7.52 133.09 1.00 13.05 16 20 N -0.63 -20.48 5.42 -434.48 -2.36 -22.84 16 21 C 0.66 19.45 7.96 129.79 1.03 20.48 16 22 O -0.55 -16.31 8.53 19.86 0.17 -16.14 16 23 O -0.36 -9.27 9.94 -55.47 -0.55 -9.82 16 24 C 0.12 2.29 1.13 -10.80 -0.01 2.28 16 25 C -0.18 -3.49 8.37 71.98 0.60 -2.89 16 26 C -0.14 -1.77 8.85 71.98 0.64 -1.13 16 27 C -0.18 -2.94 8.37 71.98 0.60 -2.34 16 28 N -0.46 -19.81 6.58 -182.19 -1.20 -21.00 16 29 H 0.26 6.77 7.80 -4.42 -0.03 6.74 16 30 H 0.12 6.71 5.56 -2.39 -0.01 6.70 16 31 H 0.07 3.56 7.36 -2.39 -0.02 3.54 16 32 H 0.27 13.89 8.31 -92.70 -0.77 13.12 16 33 H 0.15 5.13 7.64 -2.91 -0.02 5.11 16 34 H 0.18 3.47 8.06 -2.91 -0.02 3.45 16 35 H 0.19 5.24 5.13 -11.78 -0.06 5.18 16 36 H 0.42 13.14 8.93 -92.71 -0.83 12.32 16 37 H 0.05 1.10 8.14 -2.39 -0.02 1.09 16 38 H 0.10 1.30 8.14 -2.39 -0.02 1.28 16 39 H 0.07 1.60 5.88 -2.38 -0.01 1.58 16 40 H 0.07 0.88 8.14 -2.38 -0.02 0.87 16 41 H 0.11 0.81 8.14 -2.39 -0.02 0.79 16 42 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 43 H 0.07 1.44 5.88 -2.39 -0.01 1.43 16 44 H 0.10 1.08 8.14 -2.39 -0.02 1.06 16 45 H 0.06 1.01 8.14 -2.38 -0.02 0.99 16 Total: -1.00 -68.79 380.81 5.68 -63.11 By element: Atomic # 1 Polarization: 40.47 SS G_CDS: 0.17 Total: 40.64 kcal Atomic # 6 Polarization: 21.88 SS G_CDS: 8.83 Total: 30.71 kcal Atomic # 7 Polarization: -111.92 SS G_CDS: -4.90 Total: -116.82 kcal Atomic # 8 Polarization: -59.81 SS G_CDS: -0.44 Total: -60.25 kcal Atomic # 14 Polarization: 40.58 SS G_CDS: 2.03 Total: 42.61 kcal Total: -68.79 5.68 -63.11 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281605049.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.113 kcal (2) G-P(sol) polarization free energy of solvation -68.791 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.677 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.678 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.113 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.999 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds