Wall clock time and date at job start Wed Apr 1 2020 03:06:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53000 * 109.46645 * 2 1 4 4 C 1.53002 * 109.47185 * 119.99471 * 2 1 3 5 5 H 1.09000 * 109.46902 * 300.00896 * 4 2 1 6 6 N 1.46493 * 109.47624 * 180.02562 * 4 2 1 7 7 C 1.34780 * 120.00299 * 84.99719 * 6 4 2 8 8 O 1.21282 * 119.99610 * 0.02562 * 7 6 4 9 9 C 1.50696 * 120.00227 * 180.02562 * 7 6 4 10 10 C 1.50700 * 109.46990 * 180.02562 * 9 7 6 11 11 C 1.38319 * 119.96396 * 269.72105 * 10 9 7 12 12 C 1.38278 * 120.13573 * 179.77130 * 11 10 9 13 13 C 1.38123 * 120.07101 * 0.50713 * 12 11 10 14 14 C 1.38854 * 119.92820 * 359.74728 * 13 12 11 15 15 O 1.35751 * 120.06582 * 179.97438 * 14 13 12 16 16 C 1.34827 * 117.00004 * 354.48532 * 15 14 13 17 17 H 1.07998 * 120.00099 * 5.06136 * 16 15 14 18 18 C 1.38659 * 119.99843 * 185.06323 * 16 15 14 19 19 N 1.31554 * 120.00140 * 180.02562 * 18 16 15 20 20 Si 1.86804 * 119.99921 * 359.97438 * 18 16 15 21 21 H 1.48500 * 109.47125 * 90.00466 * 20 18 16 22 22 H 1.48497 * 109.47042 * 210.00242 * 20 18 16 23 23 H 1.48493 * 109.47311 * 330.00480 * 20 18 16 24 24 C 1.38082 * 119.96406 * 90.00164 * 10 9 7 25 25 C 1.50702 * 109.46905 * 60.00281 * 4 2 1 26 26 N 1.34495 * 126.28638 * 255.00379 * 25 4 2 27 27 C 1.31131 * 105.61275 * 180.02562 * 26 25 4 28 28 O 1.33645 * 106.89699 * 359.97438 * 27 26 25 29 29 N 1.21299 * 109.81496 * 0.02562 * 28 27 26 30 30 H 1.09000 * 109.47932 * 300.00264 * 1 2 3 31 31 H 1.09002 * 109.46875 * 60.00712 * 1 2 3 32 32 H 1.09004 * 109.46603 * 179.97438 * 1 2 3 33 33 H 1.08990 * 109.47800 * 239.99781 * 2 1 3 34 34 H 1.09008 * 109.47180 * 179.97438 * 3 2 1 35 35 H 1.08996 * 109.47711 * 299.99505 * 3 2 1 36 36 H 1.09003 * 109.47643 * 59.99851 * 3 2 1 37 37 H 0.96998 * 120.00076 * 265.00608 * 6 4 2 38 38 H 1.09002 * 109.47158 * 300.00207 * 9 7 6 39 39 H 1.08996 * 109.47504 * 59.99901 * 9 7 6 40 40 H 1.08001 * 119.92905 * 359.97438 * 11 10 9 41 41 H 1.08009 * 119.96600 * 180.25344 * 12 11 10 42 42 H 1.07999 * 120.03436 * 179.72474 * 13 12 11 43 43 H 0.97000 * 120.00362 * 179.97438 * 19 18 16 44 44 H 1.07996 * 120.03785 * 359.95105 * 24 10 9 45 45 H 1.08006 * 126.55434 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0398 1.4425 0.0000 4 6 2.0400 -0.7211 1.2493 5 1 1.6765 -0.2073 2.1392 6 7 3.5049 -0.7207 1.2497 7 6 4.1784 0.3374 1.7432 8 8 3.5715 1.2889 2.1874 9 6 5.6853 0.3381 1.7431 10 6 6.1871 1.6256 2.3444 11 6 6.4223 2.7213 1.5335 12 6 6.8781 3.9059 2.0821 13 6 7.1101 3.9953 3.4408 14 6 6.8800 2.8955 4.2567 15 8 7.1075 2.9801 5.5923 16 6 7.6639 4.1208 6.0475 17 1 7.8323 4.9465 5.3720 18 6 8.0200 4.2338 7.3828 19 7 8.5624 5.3469 7.8270 20 14 7.7281 2.8058 8.5513 21 1 8.9233 1.9246 8.5642 22 1 7.4834 3.3281 9.9197 23 1 6.5457 2.0297 8.0989 24 6 6.4171 1.7086 3.7034 25 6 1.5377 -2.1420 1.2494 26 7 0.5496 -2.6369 2.0159 27 6 0.4497 -3.9029 1.6890 28 8 1.3680 -4.1342 0.7460 29 7 1.9799 -3.1140 0.5089 30 1 -0.3635 0.5138 0.8899 31 1 -0.3633 0.5137 -0.8901 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8934 -0.5138 -0.8898 34 1 3.1299 1.4426 0.0005 35 1 1.6766 1.9564 -0.8900 36 1 1.6765 1.9564 0.8900 37 1 3.9903 -1.4818 0.8947 38 1 6.0491 -0.5037 2.3323 39 1 6.0487 0.2489 0.7193 40 1 6.2463 2.6524 0.4702 41 1 7.0570 4.7610 1.4470 42 1 7.4704 4.9194 3.8680 43 1 8.8112 5.4261 8.7612 44 1 6.2368 0.8516 4.3355 45 1 -0.2430 -4.6212 2.1023 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000287114775.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:06:41 Heat of formation + Delta-G solvation = 32.927297 kcal Electronic energy + Delta-G solvation = -29572.729161 eV Core-core repulsion = 25366.788600 eV Total energy + Delta-G solvation = -4205.940561 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -46.11617 -40.34382 -39.06559 -37.52980 -36.52082 -35.58975 -33.72444 -32.66729 -32.38167 -32.00260 -29.44625 -28.24197 -27.41570 -26.36851 -25.10448 -24.67852 -23.10133 -21.84851 -21.29520 -20.42209 -20.24254 -18.66111 -18.50092 -17.68792 -17.19541 -16.99916 -16.59079 -15.91348 -15.69836 -15.15676 -15.06997 -14.81055 -14.16301 -14.03581 -13.66248 -13.65059 -13.45881 -13.28430 -12.89700 -12.66949 -12.56940 -12.46154 -12.30634 -12.22205 -12.14800 -11.77695 -11.67169 -11.54763 -11.28780 -11.17571 -11.05204 -10.82347 -10.77456 -10.69366 -10.61422 -10.12817 -9.81556 -9.35196 -9.30110 -8.83328 -8.11686 -7.32025 -6.37171 -4.03735 0.69971 1.69791 2.03879 2.32336 2.52621 2.63031 2.84026 3.24441 3.26253 3.28039 3.44078 3.74062 4.27679 4.42906 4.44327 4.51163 4.69993 4.74730 4.87752 4.93756 5.08457 5.13551 5.16497 5.23979 5.33235 5.36594 5.46885 5.55595 5.57533 5.61974 5.71399 5.73945 5.82323 5.87143 5.99852 6.13976 6.15593 6.28824 6.32640 6.56144 6.82247 7.13267 7.24492 7.27634 7.35855 7.64511 7.66637 7.85055 8.08608 8.16922 8.98469 9.61735 10.70716 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.014526 B = 0.002423 C = 0.002224 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1927.107631 B =11554.488189 C =12588.081468 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.099 4.099 3 C -0.139 4.139 4 C 0.242 3.758 5 H 0.119 0.881 6 N -0.734 5.734 7 C 0.518 3.482 8 O -0.506 6.506 9 C -0.093 4.093 10 C -0.035 4.035 11 C -0.187 4.187 12 C -0.076 4.076 13 C -0.217 4.217 14 C 0.161 3.839 15 O -0.219 6.219 16 C -0.388 4.388 17 H 0.106 0.894 18 C 0.063 3.937 19 N -0.882 5.882 20 Si 0.904 3.096 21 H -0.274 1.274 22 H -0.282 1.282 23 H -0.260 1.260 24 C -0.174 4.174 25 C 0.169 3.831 26 N -0.475 5.475 27 C 0.162 3.838 28 O 0.080 5.920 29 N -0.375 5.375 30 H 0.064 0.936 31 H 0.061 0.939 32 H 0.046 0.954 33 H 0.073 0.927 34 H 0.059 0.941 35 H 0.052 0.948 36 H 0.069 0.931 37 H 0.402 0.598 38 H 0.100 0.900 39 H 0.100 0.900 40 H 0.105 0.895 41 H 0.110 0.890 42 H 0.132 0.868 43 H 0.279 0.721 44 H 0.113 0.887 45 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.198 -19.072 -17.400 29.958 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.119 4.119 3 C -0.196 4.196 4 C 0.136 3.864 5 H 0.137 0.863 6 N -0.388 5.388 7 C 0.305 3.695 8 O -0.379 6.379 9 C -0.132 4.132 10 C -0.035 4.035 11 C -0.206 4.206 12 C -0.094 4.094 13 C -0.236 4.236 14 C 0.109 3.891 15 O -0.125 6.125 16 C -0.464 4.464 17 H 0.124 0.876 18 C -0.140 4.140 19 N -0.520 5.520 20 Si 0.730 3.270 21 H -0.199 1.199 22 H -0.208 1.208 23 H -0.184 1.184 24 C -0.193 4.193 25 C -0.104 4.104 26 N -0.207 5.207 27 C -0.079 4.079 28 O 0.020 5.980 29 N -0.081 5.081 30 H 0.083 0.917 31 H 0.080 0.920 32 H 0.065 0.935 33 H 0.092 0.908 34 H 0.078 0.922 35 H 0.071 0.929 36 H 0.088 0.912 37 H 0.237 0.763 38 H 0.118 0.882 39 H 0.119 0.881 40 H 0.123 0.877 41 H 0.128 0.872 42 H 0.150 0.850 43 H 0.089 0.911 44 H 0.131 0.869 45 H 0.280 0.720 Dipole moment (debyes) X Y Z Total from point charges -15.029 -17.896 -17.011 28.906 hybrid contribution -0.082 -1.119 0.534 1.242 sum -15.111 -19.015 -16.478 29.350 Atomic orbital electron populations 1.21788 0.94186 1.01378 1.02738 1.21534 0.96367 0.97721 0.96316 1.21872 1.01727 0.93767 1.02237 1.19174 0.80980 0.84606 1.01684 0.86319 1.46034 1.05270 1.21967 1.65565 1.20736 0.90242 0.81787 0.76726 1.90786 1.69777 1.33567 1.43733 1.20583 0.90889 0.98490 1.03287 1.18615 0.98783 0.93431 0.92721 1.20404 1.08183 0.93701 0.98294 1.20733 0.97469 0.96733 0.94456 1.21296 1.08463 1.00011 0.93835 1.19003 0.93293 0.93044 0.83779 1.83569 1.71228 1.39964 1.17707 1.20764 1.39039 0.90799 0.95755 0.87647 1.24450 0.95366 0.97621 0.96561 1.69645 1.40162 1.25468 1.16711 0.86195 0.79850 0.81792 0.79162 1.19930 1.20808 1.18378 1.19936 1.08775 0.96742 0.93878 1.25902 0.93528 0.98914 0.92057 1.71914 1.17516 1.07373 1.23912 1.30578 0.93841 0.94489 0.89020 1.85320 1.37003 1.30411 1.45276 1.74598 1.17745 0.93944 1.21821 0.91730 0.91957 0.93472 0.90824 0.92180 0.92917 0.91185 0.76314 0.88221 0.88147 0.87735 0.87188 0.85004 0.91121 0.86898 0.71962 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.24 8.95 37.16 0.33 -0.91 16 2 C -0.10 -0.96 2.68 -90.62 -0.24 -1.20 16 3 C -0.14 -1.55 7.72 37.16 0.29 -1.27 16 4 C 0.24 2.59 2.39 -69.08 -0.16 2.43 16 5 H 0.12 1.52 7.58 -51.93 -0.39 1.12 16 6 N -0.73 -7.70 4.96 -54.93 -0.27 -7.97 16 7 C 0.52 6.91 6.18 -10.99 -0.07 6.84 16 8 O -0.51 -8.76 13.16 5.56 0.07 -8.68 16 9 C -0.09 -1.15 5.83 -29.04 -0.17 -1.31 16 10 C -0.03 -0.60 4.37 -104.65 -0.46 -1.06 16 11 C -0.19 -3.21 9.70 -39.54 -0.38 -3.59 16 12 C -0.08 -1.42 10.04 -39.61 -0.40 -1.82 16 13 C -0.22 -4.85 9.17 -39.40 -0.36 -5.22 16 14 C 0.16 3.85 6.65 -39.11 -0.26 3.59 16 15 O -0.22 -5.97 8.59 0.05 0.00 -5.97 16 16 C -0.39 -11.20 9.95 30.89 0.31 -10.89 16 17 H 0.11 3.10 5.44 -52.49 -0.29 2.82 16 18 C 0.06 1.80 5.49 -17.52 -0.10 1.70 16 19 N -0.88 -25.93 13.96 55.48 0.77 -25.15 16 20 Si 0.90 22.18 28.62 -169.99 -4.86 17.31 16 21 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 22 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 23 H -0.26 -6.44 7.11 56.52 0.40 -6.04 16 24 C -0.17 -3.58 9.65 -39.39 -0.38 -3.96 16 25 C 0.17 1.66 5.75 -156.37 -0.90 0.76 16 26 N -0.47 -4.24 11.55 -13.72 -0.16 -4.39 16 27 C 0.16 0.78 13.40 51.99 0.70 1.48 16 28 O 0.08 0.54 11.31 18.10 0.20 0.75 16 29 N -0.37 -3.42 11.86 30.88 0.37 -3.05 16 30 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 31 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.05 0.41 7.22 -51.93 -0.37 0.03 16 33 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 34 H 0.06 0.75 5.77 -51.92 -0.30 0.45 16 35 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.07 0.91 7.53 -51.93 -0.39 0.52 16 37 H 0.40 3.45 8.36 -40.82 -0.34 3.11 16 38 H 0.10 1.05 8.08 -51.93 -0.42 0.64 16 39 H 0.10 0.95 8.08 -51.93 -0.42 0.53 16 40 H 0.10 1.50 8.06 -52.49 -0.42 1.08 16 41 H 0.11 1.76 8.06 -52.48 -0.42 1.34 16 42 H 0.13 3.08 5.64 -52.49 -0.30 2.79 16 43 H 0.28 7.57 8.31 -40.82 -0.34 7.23 16 44 H 0.11 2.20 8.06 -52.49 -0.42 1.78 16 45 H 0.26 -0.28 8.06 -52.48 -0.42 -0.70 16 LS Contribution 380.02 15.07 5.73 5.73 Total: -1.00 -34.88 380.02 -6.14 -41.03 By element: Atomic # 1 Polarization: 10.60 SS G_CDS: -5.74 Total: 4.86 kcal Atomic # 6 Polarization: -12.19 SS G_CDS: -2.26 Total: -14.44 kcal Atomic # 7 Polarization: -41.28 SS G_CDS: 0.71 Total: -40.57 kcal Atomic # 8 Polarization: -14.19 SS G_CDS: 0.28 Total: -13.91 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -4.86 Total: 17.31 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -34.88 -6.14 -41.03 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000287114775.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.953 kcal (2) G-P(sol) polarization free energy of solvation -34.882 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.144 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.026 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.927 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds