Wall clock time and date at job start Wed Apr 1 2020 03:06:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53000 * 109.46645 * 2 1 4 4 C 1.53002 * 109.47185 * 119.99471 * 2 1 3 5 5 H 1.09000 * 109.46902 * 300.00896 * 4 2 1 6 6 N 1.46493 * 109.47624 * 180.02562 * 4 2 1 7 7 C 1.34780 * 120.00299 * 84.99719 * 6 4 2 8 8 O 1.21282 * 119.99610 * 0.02562 * 7 6 4 9 9 C 1.50696 * 120.00227 * 180.02562 * 7 6 4 10 10 C 1.50700 * 109.46990 * 180.02562 * 9 7 6 11 11 C 1.38319 * 119.96396 * 269.72105 * 10 9 7 12 12 C 1.38278 * 120.13573 * 179.77130 * 11 10 9 13 13 C 1.38123 * 120.07101 * 0.50713 * 12 11 10 14 14 C 1.38854 * 119.92820 * 359.74728 * 13 12 11 15 15 O 1.35751 * 120.06582 * 179.97438 * 14 13 12 16 16 C 1.34827 * 117.00004 * 354.48532 * 15 14 13 17 17 H 1.07998 * 120.00099 * 5.06136 * 16 15 14 18 18 C 1.38659 * 119.99843 * 185.06323 * 16 15 14 19 19 N 1.31554 * 120.00140 * 180.02562 * 18 16 15 20 20 Si 1.86804 * 119.99921 * 359.97438 * 18 16 15 21 21 H 1.48500 * 109.47125 * 90.00466 * 20 18 16 22 22 H 1.48497 * 109.47042 * 210.00242 * 20 18 16 23 23 H 1.48493 * 109.47311 * 330.00480 * 20 18 16 24 24 C 1.38082 * 119.96406 * 90.00164 * 10 9 7 25 25 C 1.50702 * 109.46905 * 60.00281 * 4 2 1 26 26 N 1.34495 * 126.28638 * 255.00379 * 25 4 2 27 27 C 1.31131 * 105.61275 * 180.02562 * 26 25 4 28 28 O 1.33645 * 106.89699 * 359.97438 * 27 26 25 29 29 N 1.21299 * 109.81496 * 0.02562 * 28 27 26 30 30 H 1.09000 * 109.47932 * 300.00264 * 1 2 3 31 31 H 1.09002 * 109.46875 * 60.00712 * 1 2 3 32 32 H 1.09004 * 109.46603 * 179.97438 * 1 2 3 33 33 H 1.08990 * 109.47800 * 239.99781 * 2 1 3 34 34 H 1.09008 * 109.47180 * 179.97438 * 3 2 1 35 35 H 1.08996 * 109.47711 * 299.99505 * 3 2 1 36 36 H 1.09003 * 109.47643 * 59.99851 * 3 2 1 37 37 H 0.96998 * 120.00076 * 265.00608 * 6 4 2 38 38 H 1.09002 * 109.47158 * 300.00207 * 9 7 6 39 39 H 1.08996 * 109.47504 * 59.99901 * 9 7 6 40 40 H 1.08001 * 119.92905 * 359.97438 * 11 10 9 41 41 H 1.08009 * 119.96600 * 180.25344 * 12 11 10 42 42 H 1.07999 * 120.03436 * 179.72474 * 13 12 11 43 43 H 0.97000 * 120.00362 * 179.97438 * 19 18 16 44 44 H 1.07996 * 120.03785 * 359.95105 * 24 10 9 45 45 H 1.08006 * 126.55434 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0398 1.4425 0.0000 4 6 2.0400 -0.7211 1.2493 5 1 1.6765 -0.2073 2.1392 6 7 3.5049 -0.7207 1.2497 7 6 4.1784 0.3374 1.7432 8 8 3.5715 1.2889 2.1874 9 6 5.6853 0.3381 1.7431 10 6 6.1871 1.6256 2.3444 11 6 6.4223 2.7213 1.5335 12 6 6.8781 3.9059 2.0821 13 6 7.1101 3.9953 3.4408 14 6 6.8800 2.8955 4.2567 15 8 7.1075 2.9801 5.5923 16 6 7.6639 4.1208 6.0475 17 1 7.8323 4.9465 5.3720 18 6 8.0200 4.2338 7.3828 19 7 8.5624 5.3469 7.8270 20 14 7.7281 2.8058 8.5513 21 1 8.9233 1.9246 8.5642 22 1 7.4834 3.3281 9.9197 23 1 6.5457 2.0297 8.0989 24 6 6.4171 1.7086 3.7034 25 6 1.5377 -2.1420 1.2494 26 7 0.5496 -2.6369 2.0159 27 6 0.4497 -3.9029 1.6890 28 8 1.3680 -4.1342 0.7460 29 7 1.9799 -3.1140 0.5089 30 1 -0.3635 0.5138 0.8899 31 1 -0.3633 0.5137 -0.8901 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8934 -0.5138 -0.8898 34 1 3.1299 1.4426 0.0005 35 1 1.6766 1.9564 -0.8900 36 1 1.6765 1.9564 0.8900 37 1 3.9903 -1.4818 0.8947 38 1 6.0491 -0.5037 2.3323 39 1 6.0487 0.2489 0.7193 40 1 6.2463 2.6524 0.4702 41 1 7.0570 4.7610 1.4470 42 1 7.4704 4.9194 3.8680 43 1 8.8112 5.4261 8.7612 44 1 6.2368 0.8516 4.3355 45 1 -0.2430 -4.6212 2.1023 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000287114775.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:06:40 Heat of formation + Delta-G solvation = 6.867017 kcal Electronic energy + Delta-G solvation = -29573.859220 eV Core-core repulsion = 25366.788600 eV Total energy + Delta-G solvation = -4207.070620 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -46.68843 -41.43840 -40.70625 -38.69475 -37.91556 -36.26852 -34.65391 -34.47846 -33.49548 -33.16299 -31.09849 -29.32905 -28.30977 -27.49815 -27.03824 -25.21686 -23.80789 -23.36502 -22.70885 -21.54703 -21.20440 -19.70372 -19.33341 -19.10143 -18.78952 -17.92920 -17.50613 -16.98406 -16.85499 -16.45181 -16.27955 -15.85387 -15.74549 -15.65513 -15.12446 -14.92123 -14.75874 -14.33260 -14.14229 -14.02022 -13.95260 -13.66921 -13.35334 -13.13969 -13.05074 -12.94990 -12.79104 -12.56133 -12.47178 -12.45180 -12.35579 -12.13305 -11.98640 -11.94213 -11.88334 -11.31942 -11.24097 -10.95178 -10.87811 -10.23275 -9.67712 -9.06702 -8.51046 -6.23615 0.20851 0.47445 0.70132 1.12584 1.28445 1.33025 1.49809 1.61129 1.95569 2.17327 2.26806 2.58778 2.76974 3.04228 3.10878 3.21719 3.67263 3.72304 3.77461 3.94708 4.06014 4.09133 4.20549 4.28790 4.40881 4.42037 4.55190 4.59362 4.62480 4.69996 4.70902 4.73103 4.85455 4.89617 4.96371 4.99350 5.05103 5.17292 5.24317 5.29168 5.39096 5.42535 5.64650 5.72366 5.76373 5.91088 6.23845 6.41857 6.83382 7.12827 7.21157 7.58670 8.60869 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.014526 B = 0.002423 C = 0.002224 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1927.107631 B =11554.488189 C =12588.081468 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.091 4.091 3 C -0.133 4.133 4 C 0.243 3.757 5 H 0.091 0.909 6 N -0.717 5.717 7 C 0.521 3.479 8 O -0.554 6.554 9 C -0.090 4.090 10 C -0.026 4.026 11 C -0.167 4.167 12 C -0.077 4.077 13 C -0.240 4.240 14 C 0.119 3.881 15 O -0.248 6.248 16 C -0.399 4.399 17 H 0.080 0.920 18 C 0.010 3.990 19 N -0.924 5.924 20 Si 0.970 3.030 21 H -0.262 1.262 22 H -0.266 1.266 23 H -0.268 1.268 24 C -0.181 4.181 25 C 0.156 3.844 26 N -0.515 5.515 27 C 0.190 3.810 28 O 0.084 5.916 29 N -0.385 5.385 30 H 0.053 0.947 31 H 0.074 0.926 32 H 0.048 0.952 33 H 0.083 0.917 34 H 0.049 0.951 35 H 0.066 0.934 36 H 0.044 0.956 37 H 0.415 0.585 38 H 0.124 0.876 39 H 0.144 0.856 40 H 0.149 0.851 41 H 0.140 0.860 42 H 0.107 0.893 43 H 0.285 0.715 44 H 0.119 0.881 45 H 0.318 0.682 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.488 -22.793 -20.059 34.551 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.111 4.111 3 C -0.190 4.190 4 C 0.137 3.863 5 H 0.109 0.891 6 N -0.371 5.371 7 C 0.309 3.691 8 O -0.430 6.430 9 C -0.129 4.129 10 C -0.027 4.027 11 C -0.186 4.186 12 C -0.095 4.095 13 C -0.259 4.259 14 C 0.070 3.930 15 O -0.156 6.156 16 C -0.476 4.476 17 H 0.098 0.902 18 C -0.188 4.188 19 N -0.565 5.565 20 Si 0.793 3.207 21 H -0.187 1.187 22 H -0.190 1.190 23 H -0.193 1.193 24 C -0.200 4.200 25 C -0.117 4.117 26 N -0.248 5.248 27 C -0.049 4.049 28 O 0.023 5.977 29 N -0.092 5.092 30 H 0.072 0.928 31 H 0.093 0.907 32 H 0.067 0.933 33 H 0.101 0.899 34 H 0.068 0.932 35 H 0.085 0.915 36 H 0.063 0.937 37 H 0.252 0.748 38 H 0.142 0.858 39 H 0.161 0.839 40 H 0.167 0.833 41 H 0.158 0.842 42 H 0.124 0.876 43 H 0.094 0.906 44 H 0.137 0.863 45 H 0.333 0.667 Dipole moment (debyes) X Y Z Total from point charges -16.323 -21.655 -19.728 33.535 hybrid contribution 0.173 -0.097 1.030 1.049 sum -16.150 -21.752 -18.698 32.918 Atomic orbital electron populations 1.21731 0.93455 1.01493 1.02835 1.21461 0.96936 0.96631 0.96111 1.21790 1.00946 0.94700 1.01604 1.19025 0.80789 0.85582 1.00949 0.89107 1.45841 1.05407 1.21518 1.64372 1.20845 0.90578 0.81624 0.76090 1.90795 1.70695 1.35476 1.46059 1.20690 0.90030 0.96387 1.05801 1.19137 0.96441 0.95762 0.91321 1.20992 1.04683 0.92420 1.00483 1.21109 0.96568 0.98801 0.93017 1.21321 1.09923 0.98922 0.95720 1.19583 0.95264 0.95030 0.83095 1.83507 1.73262 1.39103 1.19694 1.20716 1.39696 0.91150 0.96001 0.90228 1.25272 0.95256 1.00319 0.98001 1.69726 1.41971 1.27289 1.17494 0.85226 0.79585 0.78505 0.77428 1.18656 1.19029 1.19262 1.20256 1.08364 0.95718 0.95676 1.25658 0.94431 0.98576 0.93068 1.71901 1.18295 1.09412 1.25155 1.31675 0.92532 0.93964 0.86773 1.85291 1.37265 1.29496 1.45680 1.74585 1.18392 0.94165 1.22049 0.92767 0.90708 0.93294 0.89884 0.93195 0.91548 0.93729 0.74830 0.85834 0.83864 0.83333 0.84186 0.87550 0.90558 0.86272 0.66748 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.22 8.95 71.98 0.64 -1.58 16 2 C -0.09 -1.64 2.68 -10.79 -0.03 -1.67 16 3 C -0.13 -2.84 7.72 71.98 0.56 -2.29 16 4 C 0.24 4.96 2.39 44.25 0.11 5.07 16 5 H 0.09 2.38 7.58 -2.39 -0.02 2.37 16 6 N -0.72 -13.49 4.96 -446.10 -2.21 -15.70 16 7 C 0.52 12.73 6.18 87.66 0.54 13.27 16 8 O -0.55 -18.85 13.16 -3.04 -0.04 -18.89 16 9 C -0.09 -1.86 5.83 29.10 0.17 -1.69 16 10 C -0.03 -0.83 4.37 -19.88 -0.09 -0.92 16 11 C -0.17 -5.21 9.70 22.30 0.22 -4.99 16 12 C -0.08 -2.81 10.04 22.25 0.22 -2.59 16 13 C -0.24 -11.21 9.17 22.39 0.21 -11.00 16 14 C 0.12 5.94 6.65 22.58 0.15 6.09 16 15 O -0.25 -14.23 8.59 -22.72 -0.20 -14.43 16 16 C -0.40 -24.59 9.95 67.92 0.68 -23.91 16 17 H 0.08 5.13 5.44 -2.91 -0.02 5.11 16 18 C 0.01 0.58 5.49 84.84 0.47 1.04 16 19 N -0.92 -56.79 13.96 21.61 0.30 -56.49 16 20 Si 0.97 47.18 28.62 68.60 1.96 49.14 16 21 H -0.26 -12.07 7.11 99.48 0.71 -11.36 16 22 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 23 H -0.27 -13.23 7.11 99.48 0.71 -12.52 16 24 C -0.18 -7.42 9.65 22.39 0.22 -7.20 16 25 C 0.16 2.78 5.75 138.46 0.80 3.57 16 26 N -0.52 -8.20 11.55 -315.38 -3.64 -11.84 16 27 C 0.19 1.18 13.40 130.51 1.75 2.93 16 28 O 0.08 0.88 11.31 74.82 0.85 1.72 16 29 N -0.39 -6.06 11.86 -60.40 -0.72 -6.78 16 30 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 31 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 32 H 0.05 0.78 7.22 -2.38 -0.02 0.76 16 33 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 34 H 0.05 1.15 5.77 -2.38 -0.01 1.14 16 35 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 36 H 0.04 1.17 7.53 -2.39 -0.02 1.16 16 37 H 0.41 5.81 8.36 -92.71 -0.77 5.03 16 38 H 0.12 2.08 8.08 -2.39 -0.02 2.06 16 39 H 0.14 1.83 8.08 -2.39 -0.02 1.81 16 40 H 0.15 3.41 8.06 -2.91 -0.02 3.39 16 41 H 0.14 4.19 8.06 -2.91 -0.02 4.17 16 42 H 0.11 5.44 5.64 -2.91 -0.02 5.42 16 43 H 0.28 16.01 8.31 -92.71 -0.77 15.24 16 44 H 0.12 4.62 8.06 -2.91 -0.02 4.60 16 45 H 0.32 -2.25 8.06 -2.91 -0.02 -2.27 16 Total: -1.00 -83.03 380.02 3.17 -79.86 By element: Atomic # 1 Polarization: 19.00 SS G_CDS: 0.27 Total: 19.26 kcal Atomic # 6 Polarization: -32.46 SS G_CDS: 6.60 Total: -25.87 kcal Atomic # 7 Polarization: -84.54 SS G_CDS: -6.27 Total: -90.81 kcal Atomic # 8 Polarization: -32.20 SS G_CDS: 0.61 Total: -31.59 kcal Atomic # 14 Polarization: 47.18 SS G_CDS: 1.96 Total: 49.14 kcal Total: -83.03 3.17 -79.86 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000287114775.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.727 kcal (2) G-P(sol) polarization free energy of solvation -83.028 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.699 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.168 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.860 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.867 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds