Wall clock time and date at job start Wed Apr 1 2020 03:14:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53000 * 109.47058 * 2 1 4 4 C 1.52999 * 109.47157 * 120.00426 * 2 1 3 5 5 N 1.46498 * 109.47044 * 64.99973 * 4 2 1 6 6 C 1.34777 * 119.99865 * 180.02562 * 5 4 2 7 7 O 1.21288 * 119.99841 * 359.97438 * 6 5 4 8 8 C 1.50695 * 120.00387 * 180.02562 * 6 5 4 9 9 C 1.50699 * 109.47419 * 179.97438 * 8 6 5 10 10 N 1.30052 * 126.17838 * 270.01711 * 9 8 6 11 11 O 1.21278 * 110.50802 * 179.70427 * 10 9 8 12 12 C 1.34242 * 109.68566 * 0.43840 * 11 10 9 13 13 C 1.47579 * 126.68711 * 179.83365 * 12 11 10 14 14 C 1.39615 * 120.19049 * 179.68264 * 13 12 11 15 15 C 1.37880 * 119.91933 * 180.02562 * 14 13 12 16 16 C 1.38547 * 120.30962 * 0.02562 * 15 14 13 17 17 C 1.38060 * 120.39495 * 359.97438 * 16 15 14 18 18 C 1.38794 * 120.07082 * 0.02562 * 17 16 15 19 19 O 1.35568 * 120.15469 * 179.97438 * 18 17 16 20 20 C 1.34810 * 116.99959 * 354.40823 * 19 18 17 21 21 H 1.07993 * 120.00177 * 5.05956 * 20 19 18 22 22 C 1.38688 * 119.99891 * 185.06227 * 20 19 18 23 23 N 1.31528 * 119.99847 * 359.97438 * 22 20 19 24 24 Si 1.86792 * 119.99938 * 180.02562 * 22 20 19 25 25 H 1.48495 * 109.47599 * 89.99897 * 24 22 20 26 26 H 1.48504 * 109.46946 * 210.00071 * 24 22 20 27 27 H 1.48504 * 109.47191 * 329.99742 * 24 22 20 28 28 N 1.32226 * 106.62449 * 359.57402 * 12 11 10 29 29 H 1.08998 * 109.47050 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47229 * 300.00063 * 1 2 3 31 31 H 1.09005 * 109.47608 * 59.99794 * 1 2 3 32 32 H 1.09004 * 109.47021 * 240.00555 * 2 1 3 33 33 H 1.09002 * 109.47142 * 179.97438 * 3 2 1 34 34 H 1.08996 * 109.47633 * 300.00315 * 3 2 1 35 35 H 1.09004 * 109.46751 * 60.00390 * 3 2 1 36 36 H 1.08997 * 109.46611 * 304.99509 * 4 2 1 37 37 H 1.09006 * 109.46923 * 185.00148 * 4 2 1 38 38 H 0.96996 * 120.00651 * 0.02562 * 5 4 2 39 39 H 1.09005 * 109.47420 * 59.99170 * 8 6 5 40 40 H 1.09001 * 109.46895 * 300.00077 * 8 6 5 41 41 H 1.07995 * 120.04599 * 0.05114 * 14 13 12 42 42 H 1.07997 * 119.84441 * 180.02562 * 15 14 13 43 43 H 1.07997 * 119.79764 * 179.71865 * 16 15 14 44 44 H 1.07996 * 119.96382 * 180.02562 * 17 16 15 45 45 H 0.96996 * 120.00378 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 1.6524 -2.1329 1.1904 6 6 1.9955 -2.9681 2.1909 7 8 2.6256 -2.5512 3.1398 8 6 1.5974 -4.4203 2.1303 9 6 2.0997 -5.1307 3.3608 10 7 3.2528 -5.7176 3.4914 11 8 3.3643 -6.1929 4.6016 12 6 2.2489 -5.9547 5.3096 13 6 1.9824 -6.3688 6.7008 14 6 0.7702 -6.0408 7.3110 15 6 0.5272 -6.4301 8.6112 16 6 1.4811 -7.1457 9.3166 17 6 2.6841 -7.4770 8.7259 18 6 2.9456 -7.0933 7.4179 19 8 4.1265 -7.4173 6.8363 20 6 5.0507 -8.0115 7.6173 21 1 4.8052 -8.2829 8.6334 22 6 6.3168 -8.2744 7.1160 23 7 6.6157 -7.9442 5.8784 24 14 7.5972 -9.0985 8.1980 25 1 7.5013 -10.5723 8.0437 26 1 8.9525 -8.6456 7.7937 27 1 7.3558 -8.7326 9.6169 28 7 1.4380 -5.2717 4.5195 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 -0.3634 0.5139 -0.8900 32 1 1.8933 -0.5138 -0.8901 33 1 3.1300 1.4425 0.0005 34 1 1.6766 1.9564 -0.8899 35 1 1.6766 1.9563 0.8901 36 1 1.6054 -0.2618 2.1369 37 1 3.1263 -0.6444 1.2951 38 1 1.1488 -2.4665 0.4314 39 1 2.0327 -4.8797 1.2428 40 1 0.5111 -4.4975 2.0836 41 1 0.0236 -5.4831 6.7652 42 1 -0.4110 -6.1761 9.0819 43 1 1.2839 -7.4425 10.3361 44 1 3.4225 -8.0354 9.2821 45 1 7.5010 -8.1284 5.5276 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000288944725.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:14:55 Heat of formation + Delta-G solvation = 19.945590 kcal Electronic energy + Delta-G solvation = -29189.559513 eV Core-core repulsion = 24983.056023 eV Total energy + Delta-G solvation = -4206.503490 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -44.60492 -39.81593 -39.19478 -36.98084 -36.61791 -35.11549 -33.50232 -32.90631 -32.42301 -30.29273 -29.48140 -28.79415 -27.59306 -26.19821 -25.53758 -23.83909 -22.63781 -21.47449 -21.05267 -20.83882 -19.99702 -18.14955 -17.66531 -17.50099 -16.71634 -16.54306 -16.11578 -15.85622 -15.42312 -14.79648 -14.69620 -14.51283 -14.22611 -13.99044 -13.86723 -13.70053 -13.39418 -13.32085 -13.16212 -12.80003 -12.74123 -12.49505 -12.13986 -11.82106 -11.64764 -11.60951 -11.53793 -11.31593 -11.12379 -11.08511 -11.06151 -10.89587 -10.82429 -10.51651 -10.28282 -10.04382 -9.63402 -9.57766 -9.23012 -8.96815 -8.10910 -7.36847 -6.57055 -4.16149 1.28923 2.23014 2.30698 2.60246 2.87601 3.07262 3.08898 3.13773 3.25763 3.66607 3.84833 4.06784 4.35056 4.44292 4.47574 4.56214 4.61693 4.78080 4.92591 5.04799 5.12777 5.16700 5.22703 5.28152 5.32456 5.42207 5.49686 5.55889 5.57713 5.64641 5.71054 5.80901 5.85115 5.90665 5.96560 6.14230 6.26294 6.34482 6.52869 6.60059 6.65518 6.91204 7.04992 7.15759 7.22179 7.31568 7.58154 7.82173 8.14761 8.83616 8.96703 9.46429 10.57038 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.013114 B = 0.002466 C = 0.002183 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2134.667808 B =11351.466028 C =12825.050808 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.108 4.108 3 C -0.146 4.146 4 C 0.123 3.877 5 N -0.733 5.733 6 C 0.518 3.482 7 O -0.519 6.519 8 C -0.041 4.041 9 C 0.168 3.832 10 N -0.386 5.386 11 O 0.119 5.881 12 C 0.261 3.739 13 C -0.131 4.131 14 C -0.011 4.011 15 C -0.224 4.224 16 C -0.046 4.046 17 C -0.232 4.232 18 C 0.176 3.824 19 O -0.146 6.146 20 C -0.398 4.398 21 H 0.099 0.901 22 C 0.045 3.955 23 N -0.835 5.835 24 Si 0.944 3.056 25 H -0.271 1.271 26 H -0.276 1.276 27 H -0.265 1.265 28 N -0.502 5.502 29 H 0.056 0.944 30 H 0.058 0.942 31 H 0.057 0.943 32 H 0.077 0.923 33 H 0.058 0.942 34 H 0.059 0.941 35 H 0.058 0.942 36 H 0.068 0.932 37 H 0.067 0.933 38 H 0.400 0.600 39 H 0.117 0.883 40 H 0.121 0.879 41 H 0.127 0.873 42 H 0.116 0.884 43 H 0.115 0.885 44 H 0.136 0.864 45 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.987 10.210 -8.968 18.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.127 4.127 3 C -0.203 4.203 4 C 0.000 4.000 5 N -0.387 5.387 6 C 0.303 3.697 7 O -0.393 6.393 8 C -0.083 4.083 9 C -0.106 4.106 10 N -0.092 5.092 11 O 0.057 5.943 12 C 0.048 3.952 13 C -0.135 4.135 14 C -0.031 4.031 15 C -0.243 4.243 16 C -0.065 4.065 17 C -0.251 4.251 18 C 0.117 3.883 19 O -0.045 6.045 20 C -0.473 4.473 21 H 0.116 0.884 22 C -0.163 4.163 23 N -0.466 5.466 24 Si 0.768 3.232 25 H -0.197 1.197 26 H -0.201 1.201 27 H -0.189 1.189 28 N -0.238 5.238 29 H 0.075 0.925 30 H 0.077 0.923 31 H 0.076 0.924 32 H 0.095 0.905 33 H 0.077 0.923 34 H 0.079 0.921 35 H 0.078 0.922 36 H 0.086 0.914 37 H 0.086 0.914 38 H 0.234 0.766 39 H 0.135 0.865 40 H 0.139 0.861 41 H 0.145 0.855 42 H 0.134 0.866 43 H 0.133 0.867 44 H 0.154 0.846 45 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -10.939 10.727 -9.486 18.019 hybrid contribution 0.446 -0.605 0.301 0.809 sum -10.493 10.122 -9.185 17.231 Atomic orbital electron populations 1.21878 0.94617 1.01997 1.02183 1.21360 0.96512 0.97001 0.97826 1.21766 1.01388 0.94928 1.02268 1.21432 1.00258 0.80238 0.98112 1.45906 1.59094 1.09815 1.23892 1.20338 0.79448 0.87597 0.82360 1.90791 1.38279 1.77575 1.32695 1.19714 1.03633 0.91213 0.93701 1.24485 0.89361 1.01002 0.95707 1.74556 1.19506 1.14734 1.00443 1.85661 1.36396 1.55771 1.16424 1.26031 0.81587 0.92224 0.95383 1.16289 0.97719 1.12257 0.87260 1.20710 0.93395 0.94853 0.94134 1.20534 1.00800 1.07705 0.95229 1.20982 0.92604 0.94443 0.98486 1.21088 0.99568 1.08745 0.95678 1.19290 0.87003 0.90956 0.91047 1.83976 1.18844 1.64403 1.37232 1.21469 0.90764 1.38430 0.96632 0.88395 1.25410 0.97200 0.97015 0.96717 1.70071 1.21778 1.41001 1.13767 0.85668 0.79076 0.79134 0.79340 1.19655 1.20075 1.18939 1.71935 1.30317 1.20208 1.01370 0.92533 0.92298 0.92394 0.90489 0.92260 0.92144 0.92249 0.91363 0.91429 0.76582 0.86484 0.86082 0.85508 0.86603 0.86739 0.84641 0.91523 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.84 9.07 37.16 0.34 -0.51 16 2 C -0.11 -0.69 2.96 -90.62 -0.27 -0.96 16 3 C -0.15 -0.86 9.19 37.16 0.34 -0.52 16 4 C 0.12 1.18 5.06 -4.04 -0.02 1.16 16 5 N -0.73 -7.29 5.28 -60.29 -0.32 -7.61 16 6 C 0.52 7.66 7.82 -10.99 -0.09 7.57 16 7 O -0.52 -10.62 16.03 5.55 0.09 -10.53 16 8 C -0.04 -0.56 6.33 -29.04 -0.18 -0.75 16 9 C 0.17 3.41 6.69 -156.57 -1.05 2.36 16 10 N -0.39 -9.15 12.15 31.21 0.38 -8.78 16 11 O 0.12 3.09 10.01 -1.92 -0.02 3.07 16 12 C 0.26 6.14 7.96 -13.90 -0.11 6.03 16 13 C -0.13 -2.91 5.89 -104.82 -0.62 -3.52 16 14 C -0.01 -0.21 9.70 -39.20 -0.38 -0.59 16 15 C -0.22 -3.67 10.03 -39.60 -0.40 -4.06 16 16 C -0.05 -0.78 10.03 -39.53 -0.40 -1.17 16 17 C -0.23 -4.71 9.16 -39.44 -0.36 -5.07 16 18 C 0.18 4.18 6.66 -38.62 -0.26 3.93 16 19 O -0.15 -4.02 8.21 -17.79 -0.15 -4.17 16 20 C -0.40 -10.61 9.49 30.90 0.29 -10.32 16 21 H 0.10 2.36 5.21 -52.49 -0.27 2.08 16 22 C 0.04 1.19 5.49 -17.52 -0.10 1.09 16 23 N -0.83 -24.02 13.67 55.48 0.76 -23.26 16 24 Si 0.94 19.76 29.55 -169.99 -5.02 14.74 16 25 H -0.27 -5.52 7.11 56.52 0.40 -5.12 16 26 H -0.28 -5.72 7.11 56.52 0.40 -5.32 16 27 H -0.27 -5.30 7.11 56.52 0.40 -4.90 16 28 N -0.50 -10.78 11.26 -10.18 -0.11 -10.90 16 29 H 0.06 0.29 7.18 -51.93 -0.37 -0.08 16 30 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.06 0.28 8.14 -51.93 -0.42 -0.15 16 32 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 34 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 35 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 36 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.40 2.55 7.66 -40.82 -0.31 2.24 16 39 H 0.12 1.27 8.14 -51.93 -0.42 0.85 16 40 H 0.12 1.25 8.14 -51.93 -0.42 0.82 16 41 H 0.13 2.15 7.88 -52.49 -0.41 1.73 16 42 H 0.12 1.53 8.06 -52.49 -0.42 1.11 16 43 H 0.11 1.54 8.06 -52.49 -0.42 1.11 16 44 H 0.14 2.67 5.64 -52.49 -0.30 2.37 16 45 H 0.27 7.26 8.31 -40.82 -0.34 6.92 16 LS Contribution 388.42 15.07 5.85 5.85 Total: -1.00 -35.20 388.42 -7.67 -42.87 By element: Atomic # 1 Polarization: 9.91 SS G_CDS: -5.88 Total: 4.04 kcal Atomic # 6 Polarization: -2.08 SS G_CDS: -3.25 Total: -5.33 kcal Atomic # 7 Polarization: -51.25 SS G_CDS: 0.70 Total: -50.54 kcal Atomic # 8 Polarization: -11.55 SS G_CDS: -0.08 Total: -11.63 kcal Atomic # 14 Polarization: 19.76 SS G_CDS: -5.02 Total: 14.74 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -35.20 -7.67 -42.87 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000288944725.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.813 kcal (2) G-P(sol) polarization free energy of solvation -35.199 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.614 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.668 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.867 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.946 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds