Wall clock time and date at job start Wed Apr 1 2020 03:14:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53000 * 109.47058 * 2 1 4 4 C 1.52999 * 109.47157 * 120.00426 * 2 1 3 5 5 N 1.46498 * 109.47044 * 64.99973 * 4 2 1 6 6 C 1.34777 * 119.99865 * 180.02562 * 5 4 2 7 7 O 1.21288 * 119.99841 * 359.97438 * 6 5 4 8 8 C 1.50695 * 120.00387 * 180.02562 * 6 5 4 9 9 C 1.50699 * 109.47419 * 179.97438 * 8 6 5 10 10 N 1.30052 * 126.17838 * 270.01711 * 9 8 6 11 11 O 1.21278 * 110.50802 * 179.70427 * 10 9 8 12 12 C 1.34242 * 109.68566 * 0.43840 * 11 10 9 13 13 C 1.47579 * 126.68711 * 179.83365 * 12 11 10 14 14 C 1.39615 * 120.19049 * 179.68264 * 13 12 11 15 15 C 1.37880 * 119.91933 * 180.02562 * 14 13 12 16 16 C 1.38547 * 120.30962 * 0.02562 * 15 14 13 17 17 C 1.38060 * 120.39495 * 359.97438 * 16 15 14 18 18 C 1.38794 * 120.07082 * 0.02562 * 17 16 15 19 19 O 1.35568 * 120.15469 * 179.97438 * 18 17 16 20 20 C 1.34810 * 116.99959 * 354.40823 * 19 18 17 21 21 H 1.07993 * 120.00177 * 5.05956 * 20 19 18 22 22 C 1.38688 * 119.99891 * 185.06227 * 20 19 18 23 23 N 1.31528 * 119.99847 * 359.97438 * 22 20 19 24 24 Si 1.86792 * 119.99938 * 180.02562 * 22 20 19 25 25 H 1.48495 * 109.47599 * 89.99897 * 24 22 20 26 26 H 1.48504 * 109.46946 * 210.00071 * 24 22 20 27 27 H 1.48504 * 109.47191 * 329.99742 * 24 22 20 28 28 N 1.32226 * 106.62449 * 359.57402 * 12 11 10 29 29 H 1.08998 * 109.47050 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47229 * 300.00063 * 1 2 3 31 31 H 1.09005 * 109.47608 * 59.99794 * 1 2 3 32 32 H 1.09004 * 109.47021 * 240.00555 * 2 1 3 33 33 H 1.09002 * 109.47142 * 179.97438 * 3 2 1 34 34 H 1.08996 * 109.47633 * 300.00315 * 3 2 1 35 35 H 1.09004 * 109.46751 * 60.00390 * 3 2 1 36 36 H 1.08997 * 109.46611 * 304.99509 * 4 2 1 37 37 H 1.09006 * 109.46923 * 185.00148 * 4 2 1 38 38 H 0.96996 * 120.00651 * 0.02562 * 5 4 2 39 39 H 1.09005 * 109.47420 * 59.99170 * 8 6 5 40 40 H 1.09001 * 109.46895 * 300.00077 * 8 6 5 41 41 H 1.07995 * 120.04599 * 0.05114 * 14 13 12 42 42 H 1.07997 * 119.84441 * 180.02562 * 15 14 13 43 43 H 1.07997 * 119.79764 * 179.71865 * 16 15 14 44 44 H 1.07996 * 119.96382 * 180.02562 * 17 16 15 45 45 H 0.96996 * 120.00378 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 1.6524 -2.1329 1.1904 6 6 1.9955 -2.9681 2.1909 7 8 2.6256 -2.5512 3.1398 8 6 1.5974 -4.4203 2.1303 9 6 2.0997 -5.1307 3.3608 10 7 3.2528 -5.7176 3.4914 11 8 3.3643 -6.1929 4.6016 12 6 2.2489 -5.9547 5.3096 13 6 1.9824 -6.3688 6.7008 14 6 0.7702 -6.0408 7.3110 15 6 0.5272 -6.4301 8.6112 16 6 1.4811 -7.1457 9.3166 17 6 2.6841 -7.4770 8.7259 18 6 2.9456 -7.0933 7.4179 19 8 4.1265 -7.4173 6.8363 20 6 5.0507 -8.0115 7.6173 21 1 4.8052 -8.2829 8.6334 22 6 6.3168 -8.2744 7.1160 23 7 6.6157 -7.9442 5.8784 24 14 7.5972 -9.0985 8.1980 25 1 7.5013 -10.5723 8.0437 26 1 8.9525 -8.6456 7.7937 27 1 7.3558 -8.7326 9.6169 28 7 1.4380 -5.2717 4.5195 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 -0.3634 0.5139 -0.8900 32 1 1.8933 -0.5138 -0.8901 33 1 3.1300 1.4425 0.0005 34 1 1.6766 1.9564 -0.8899 35 1 1.6766 1.9563 0.8901 36 1 1.6054 -0.2618 2.1369 37 1 3.1263 -0.6444 1.2951 38 1 1.1488 -2.4665 0.4314 39 1 2.0327 -4.8797 1.2428 40 1 0.5111 -4.4975 2.0836 41 1 0.0236 -5.4831 6.7652 42 1 -0.4110 -6.1761 9.0819 43 1 1.2839 -7.4425 10.3361 44 1 3.4225 -8.0354 9.2821 45 1 7.5010 -8.1284 5.5276 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000288944725.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:14:54 Heat of formation + Delta-G solvation = -5.919053 kcal Electronic energy + Delta-G solvation = -29190.681088 eV Core-core repulsion = 24983.056023 eV Total energy + Delta-G solvation = -4207.625065 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -46.32933 -40.97694 -40.88429 -38.30799 -37.80026 -36.74966 -34.62659 -34.41175 -34.22817 -31.68256 -31.00472 -30.39581 -28.05403 -27.46129 -27.06539 -25.50300 -24.20148 -23.14484 -22.44335 -21.69748 -21.09705 -19.93601 -19.28246 -19.07938 -18.12131 -17.95087 -17.28931 -17.16209 -16.66031 -16.39981 -16.17543 -15.72080 -15.69066 -15.40658 -15.12947 -14.98821 -14.68370 -14.46079 -14.38316 -14.06496 -13.61578 -13.56330 -13.37924 -13.31174 -13.10035 -12.91468 -12.72624 -12.63401 -12.52839 -12.35263 -12.12396 -12.06532 -12.00849 -11.88591 -11.66585 -11.56009 -11.33366 -11.05451 -10.84579 -10.23107 -9.69193 -9.07149 -8.48706 -6.18231 -0.39543 0.64916 0.71834 1.35146 1.35779 1.44543 1.46221 1.54163 1.94059 2.09816 2.14371 2.61455 2.79869 3.06229 3.11460 3.30134 3.67235 3.75972 3.90388 3.93949 4.09843 4.10510 4.17098 4.28236 4.37679 4.53779 4.55050 4.58164 4.63592 4.74661 4.79790 4.82864 4.89326 4.96835 4.99533 5.02157 5.06576 5.13692 5.20733 5.26304 5.39462 5.45896 5.50518 5.55636 5.65702 5.93041 6.08795 6.40469 6.91789 7.11435 7.19940 7.65537 8.71037 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.013114 B = 0.002466 C = 0.002183 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2134.667808 B =11351.466028 C =12825.050808 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.098 4.098 3 C -0.147 4.147 4 C 0.121 3.879 5 N -0.705 5.705 6 C 0.518 3.482 7 O -0.587 6.587 8 C -0.042 4.042 9 C 0.183 3.817 10 N -0.420 5.420 11 O 0.067 5.933 12 C 0.247 3.753 13 C -0.151 4.151 14 C -0.015 4.015 15 C -0.192 4.192 16 C -0.029 4.029 17 C -0.244 4.244 18 C 0.147 3.853 19 O -0.201 6.201 20 C -0.419 4.419 21 H 0.116 0.884 22 C -0.018 4.018 23 N -0.904 5.904 24 Si 1.021 2.979 25 H -0.261 1.261 26 H -0.277 1.277 27 H -0.246 1.246 28 N -0.499 5.499 29 H 0.063 0.937 30 H 0.049 0.951 31 H 0.071 0.929 32 H 0.091 0.909 33 H 0.053 0.947 34 H 0.075 0.925 35 H 0.054 0.946 36 H 0.054 0.946 37 H 0.049 0.951 38 H 0.422 0.578 39 H 0.151 0.849 40 H 0.165 0.835 41 H 0.146 0.854 42 H 0.168 0.832 43 H 0.165 0.835 44 H 0.137 0.863 45 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.615 10.759 -8.123 20.629 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.117 4.117 3 C -0.205 4.205 4 C -0.003 4.003 5 N -0.359 5.359 6 C 0.303 3.697 7 O -0.467 6.467 8 C -0.082 4.082 9 C -0.091 4.091 10 N -0.134 5.134 11 O 0.015 5.985 12 C 0.034 3.966 13 C -0.156 4.156 14 C -0.035 4.035 15 C -0.210 4.210 16 C -0.047 4.047 17 C -0.263 4.263 18 C 0.091 3.909 19 O -0.103 6.103 20 C -0.494 4.494 21 H 0.133 0.867 22 C -0.218 4.218 23 N -0.539 5.539 24 Si 0.840 3.160 25 H -0.186 1.186 26 H -0.202 1.202 27 H -0.169 1.169 28 N -0.235 5.235 29 H 0.082 0.918 30 H 0.068 0.932 31 H 0.090 0.910 32 H 0.109 0.891 33 H 0.072 0.928 34 H 0.094 0.906 35 H 0.073 0.927 36 H 0.072 0.928 37 H 0.068 0.932 38 H 0.260 0.740 39 H 0.169 0.831 40 H 0.182 0.818 41 H 0.163 0.837 42 H 0.185 0.815 43 H 0.182 0.818 44 H 0.154 0.846 45 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -14.651 11.267 -8.624 20.395 hybrid contribution 1.116 -0.572 0.073 1.256 sum -13.535 10.695 -8.551 19.253 Atomic orbital electron populations 1.21886 0.93622 1.02616 1.02491 1.21318 0.97191 0.96834 0.96311 1.21788 1.01125 0.94743 1.02816 1.21518 0.99286 0.79997 0.99494 1.45704 1.57558 1.09517 1.23128 1.20524 0.78647 0.88255 0.82258 1.90778 1.41618 1.78708 1.35557 1.20132 1.06287 0.89966 0.91832 1.25607 0.87948 0.98660 0.96904 1.74542 1.21591 1.17019 1.00293 1.85631 1.37930 1.57369 1.17587 1.26605 0.81393 0.92337 0.96303 1.16845 0.99042 1.12661 0.87024 1.21081 0.92158 0.94847 0.95379 1.21186 1.02043 1.04110 0.93684 1.21545 0.90529 0.92243 1.00401 1.21311 1.01446 1.09121 0.94432 1.19918 0.86482 0.91624 0.92856 1.83989 1.20484 1.67201 1.38669 1.22022 0.91302 1.38635 0.97469 0.86715 1.26717 0.99405 0.97623 0.98092 1.70256 1.22333 1.44854 1.16473 0.84559 0.75436 0.78132 0.77917 1.18573 1.20222 1.16919 1.71956 1.30022 1.19910 1.01628 0.91772 0.93155 0.90967 0.89077 0.92789 0.90573 0.92723 0.92805 0.93224 0.73990 0.83149 0.81771 0.83655 0.81484 0.81777 0.84555 0.91824 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.30 9.07 71.98 0.65 -0.65 16 2 C -0.10 -1.06 2.96 -10.80 -0.03 -1.09 16 3 C -0.15 -1.55 9.19 71.98 0.66 -0.89 16 4 C 0.12 2.26 5.06 86.38 0.44 2.69 16 5 N -0.71 -12.91 5.28 -463.06 -2.45 -15.35 16 6 C 0.52 15.02 7.82 87.66 0.69 15.71 16 7 O -0.59 -24.87 16.03 -3.05 -0.05 -24.92 16 8 C -0.04 -1.07 6.33 29.10 0.18 -0.88 16 9 C 0.18 7.56 6.69 138.53 0.93 8.49 16 10 N -0.42 -21.18 12.15 -58.50 -0.71 -21.89 16 11 O 0.07 3.78 10.01 86.91 0.87 4.65 16 12 C 0.25 12.21 7.96 87.22 0.69 12.91 16 13 C -0.15 -6.88 5.89 -19.99 -0.12 -7.00 16 14 C -0.02 -0.53 9.70 22.52 0.22 -0.31 16 15 C -0.19 -5.32 10.03 22.26 0.22 -5.10 16 16 C -0.03 -0.84 10.03 22.30 0.22 -0.62 16 17 C -0.24 -9.72 9.16 22.36 0.20 -9.51 16 18 C 0.15 7.24 6.66 22.89 0.15 7.40 16 19 O -0.20 -11.95 8.21 -2.88 -0.02 -11.98 16 20 C -0.42 -23.72 9.49 67.93 0.64 -23.08 16 21 H 0.12 5.73 5.21 -2.91 -0.02 5.71 16 22 C -0.02 -1.04 5.49 84.85 0.47 -0.57 16 23 N -0.90 -56.42 13.67 21.62 0.30 -56.13 16 24 Si 1.02 42.28 29.55 68.60 2.03 44.30 16 25 H -0.26 -10.21 7.11 99.48 0.71 -9.51 16 26 H -0.28 -11.33 7.11 99.48 0.71 -10.62 16 27 H -0.25 -9.23 7.11 99.48 0.71 -8.53 16 28 N -0.50 -21.75 11.26 -302.67 -3.41 -25.16 16 29 H 0.06 0.46 7.18 -2.39 -0.02 0.44 16 30 H 0.05 0.54 8.14 -2.39 -0.02 0.52 16 31 H 0.07 0.46 8.14 -2.38 -0.02 0.44 16 32 H 0.09 0.78 8.14 -2.39 -0.02 0.76 16 33 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 34 H 0.08 0.59 8.14 -2.39 -0.02 0.57 16 35 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 36 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 37 H 0.05 1.13 8.14 -2.38 -0.02 1.11 16 38 H 0.42 4.05 7.66 -92.71 -0.71 3.34 16 39 H 0.15 2.89 8.14 -2.38 -0.02 2.87 16 40 H 0.16 2.78 8.14 -2.39 -0.02 2.76 16 41 H 0.15 4.50 7.88 -2.91 -0.02 4.48 16 42 H 0.17 3.10 8.06 -2.91 -0.02 3.08 16 43 H 0.16 3.29 8.06 -2.91 -0.02 3.27 16 44 H 0.14 5.32 5.64 -2.91 -0.02 5.30 16 45 H 0.27 15.72 8.31 -92.71 -0.77 14.95 16 Total: -1.00 -88.74 388.42 3.11 -85.63 By element: Atomic # 1 Polarization: 23.00 SS G_CDS: 0.33 Total: 23.33 kcal Atomic # 6 Polarization: -8.72 SS G_CDS: 6.23 Total: -2.50 kcal Atomic # 7 Polarization: -112.26 SS G_CDS: -6.27 Total: -118.53 kcal Atomic # 8 Polarization: -33.04 SS G_CDS: 0.80 Total: -32.24 kcal Atomic # 14 Polarization: 42.28 SS G_CDS: 2.03 Total: 44.30 kcal Total: -88.74 3.11 -85.63 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000288944725.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.710 kcal (2) G-P(sol) polarization free energy of solvation -88.738 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.027 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.108 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.629 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.919 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds