Wall clock time and date at job start Wed Apr 1 2020 03:52:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30994 * 1 3 3 C 1.50698 * 120.00078 * 2 1 4 4 N 1.46911 * 109.46760 * 124.11533 * 3 2 1 5 5 C 1.46902 * 110.99597 * 298.60303 * 4 3 2 6 6 C 1.50699 * 109.47452 * 287.97382 * 5 4 3 7 7 H 1.07998 * 119.99930 * 354.68943 * 6 5 4 8 8 C 1.37872 * 119.99802 * 174.68500 * 6 5 4 9 9 N 1.31517 * 120.00303 * 359.97438 * 8 6 5 10 10 Si 1.86805 * 119.99767 * 180.02562 * 8 6 5 11 11 H 1.48502 * 109.47108 * 359.97438 * 10 8 6 12 12 H 1.48496 * 109.47197 * 120.00184 * 10 8 6 13 13 H 1.48506 * 109.46844 * 240.00037 * 10 8 6 14 14 C 1.46891 * 111.00144 * 62.56221 * 4 3 2 15 15 C 1.50700 * 109.47490 * 66.04680 * 14 4 3 16 16 O 1.21287 * 119.99747 * 359.97438 * 15 14 4 17 17 N 1.34775 * 120.00235 * 180.02562 * 15 14 4 18 18 C 1.46537 * 124.97678 * 359.96627 * 17 15 14 19 19 C 1.53741 * 105.19530 * 180.02562 * 18 17 15 20 20 C 1.51216 * 104.58451 * 0.02562 * 19 18 17 21 21 C 1.38185 * 130.97323 * 179.97438 * 20 19 18 22 22 C 1.38225 * 120.14846 * 179.97438 * 21 20 19 23 23 C 1.38292 * 119.82981 * 359.97438 * 22 21 20 24 24 N 1.48012 * 119.88821 * 179.97438 * 23 22 21 25 25 O 1.21795 * 120.00122 * 0.02562 * 24 23 22 26 26 O 1.21806 * 120.00173 * 180.02562 * 24 23 22 27 27 C 1.37840 * 120.22563 * 0.25603 * 23 22 21 28 28 C 1.38562 * 108.55848 * 359.97438 * 20 19 18 29 29 H 1.08004 * 120.00046 * 359.97438 * 1 2 3 30 30 H 1.08004 * 120.00320 * 179.97438 * 1 2 3 31 31 H 1.08004 * 120.00046 * 180.02562 * 2 1 3 32 32 H 1.08990 * 109.47205 * 4.11556 * 3 2 1 33 33 H 1.09000 * 109.47091 * 244.10896 * 3 2 1 34 34 H 1.09004 * 109.46853 * 47.97320 * 5 4 3 35 35 H 1.08993 * 109.46826 * 167.97253 * 5 4 3 36 36 H 0.97004 * 119.99672 * 179.97438 * 9 8 6 37 37 H 1.08999 * 109.47070 * 306.04243 * 14 4 3 38 38 H 1.09001 * 109.47160 * 186.04921 * 14 4 3 39 39 H 1.09005 * 110.29714 * 61.11446 * 18 17 15 40 40 H 1.08993 * 110.38980 * 299.01516 * 18 17 15 41 41 H 1.09007 * 110.41716 * 241.23144 * 19 18 17 42 42 H 1.08999 * 110.41553 * 118.78243 * 19 18 17 43 43 H 1.07999 * 119.92200 * 0.02562 * 21 20 19 44 44 H 1.08000 * 120.08037 * 180.02562 * 22 21 20 45 45 H 1.07998 * 119.85936 * 179.74043 * 27 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 7 2.9810 1.3407 1.1468 5 6 2.2432 1.2544 2.4141 6 6 1.5165 2.5511 2.6616 7 1 1.6624 3.3878 1.9945 8 6 0.6652 2.6693 3.7397 9 7 0.4870 1.6503 4.5518 10 14 -0.2362 4.2766 4.0461 11 1 0.1335 5.2595 2.9961 12 1 -1.7013 4.0376 4.0073 13 1 0.1431 4.8105 5.3790 14 6 3.9869 0.2746 1.0494 15 6 4.8823 0.5352 -0.1343 16 8 4.7001 1.5127 -0.8289 17 7 5.8849 -0.3184 -0.4218 18 6 6.2021 -1.5289 0.3406 19 6 7.4120 -2.1508 -0.3757 20 6 7.6966 -1.2125 -1.5269 21 6 8.6647 -1.2546 -2.5120 22 6 8.7214 -0.2621 -3.4724 23 6 7.8059 0.7741 -3.4458 24 7 7.8658 1.8378 -4.4733 25 8 8.7201 1.7994 -5.3405 26 8 7.0608 2.7516 -4.4515 27 6 6.8414 0.8227 -2.4623 28 6 6.7754 -0.1781 -1.4908 29 1 -0.5400 0.9353 0.0004 30 1 -0.5401 -0.9353 -0.0004 31 1 1.8500 -0.9353 -0.0004 32 1 1.3575 2.1322 0.0737 33 1 2.6337 1.3953 -0.9245 34 1 1.5224 0.4385 2.3600 35 1 2.9422 1.0683 3.2294 36 1 -0.1117 1.7337 5.3105 37 1 3.4873 -0.6858 0.9226 38 1 4.5852 0.2553 1.9603 39 1 5.3579 -2.2183 0.3241 40 1 6.4609 -1.2736 1.3681 41 1 7.1641 -3.1450 -0.7475 42 1 8.2688 -2.1981 0.2965 43 1 9.3781 -2.0652 -2.5320 44 1 9.4783 -0.2963 -4.2421 45 1 6.1320 1.6368 -2.4446 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292298144.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:52:28 Heat of formation + Delta-G solvation = 38.030804 kcal Electronic energy + Delta-G solvation = -29972.923633 eV Core-core repulsion = 25767.204376 eV Total energy + Delta-G solvation = -4205.719257 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.35517 -41.51948 -39.26872 -37.21944 -36.64480 -36.59710 -33.06897 -32.88852 -32.29301 -30.94622 -30.39129 -28.23523 -26.70588 -26.38310 -24.59566 -23.53127 -23.45980 -21.93267 -21.13516 -20.36501 -19.08478 -18.90623 -18.53113 -17.63227 -17.25432 -16.81617 -16.68337 -16.22604 -15.54736 -15.45546 -15.19425 -14.68252 -14.45067 -14.29789 -14.27104 -13.79359 -13.46819 -13.41608 -13.11478 -12.51859 -12.49122 -12.47217 -12.24217 -12.06744 -11.69326 -11.63360 -11.30129 -11.28633 -11.21646 -11.03383 -10.88105 -10.75450 -10.65108 -10.57272 -10.07395 -9.90263 -9.73758 -9.24866 -8.77000 -8.47009 -8.38147 -7.40160 -6.07242 -4.07621 -0.37761 0.60509 1.11898 1.21369 2.34588 2.43166 2.80384 3.03179 3.29169 3.37148 3.43501 3.67318 3.88105 4.20250 4.32787 4.36250 4.41309 4.48399 4.49487 4.80178 4.89067 5.00755 5.10924 5.13281 5.26388 5.29024 5.37346 5.39839 5.42236 5.49640 5.57220 5.64247 5.70386 5.75461 6.07822 6.16929 6.32822 6.35236 6.67749 6.90381 7.06460 7.10165 7.21212 7.32956 7.53413 7.73350 7.87088 7.99939 8.07166 8.43186 9.01005 9.56808 11.03402 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.014500 B = 0.002650 C = 0.002446 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1930.521398 B =10564.565884 C =11446.543719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.188 4.188 3 C 0.083 3.917 4 N -0.513 5.513 5 C 0.192 3.808 6 C -0.502 4.502 7 H 0.065 0.935 8 C 0.057 3.943 9 N -0.899 5.899 10 Si 0.896 3.104 11 H -0.271 1.271 12 H -0.285 1.285 13 H -0.284 1.284 14 C 0.041 3.959 15 C 0.524 3.476 16 O -0.483 6.483 17 N -0.560 5.560 18 C 0.098 3.902 19 C -0.089 4.089 20 C -0.095 4.095 21 C -0.076 4.076 22 C -0.087 4.087 23 C -0.016 4.016 24 N 0.028 4.972 25 O -0.162 6.162 26 O -0.151 6.151 27 C -0.077 4.077 28 C 0.164 3.836 29 H 0.099 0.901 30 H 0.085 0.915 31 H 0.091 0.909 32 H 0.088 0.912 33 H 0.078 0.922 34 H 0.009 0.991 35 H 0.023 0.977 36 H 0.260 0.740 37 H 0.062 0.938 38 H 0.103 0.897 39 H 0.091 0.909 40 H 0.094 0.906 41 H 0.102 0.898 42 H 0.103 0.897 43 H 0.149 0.851 44 H 0.155 0.845 45 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.093 -13.770 -10.919 23.829 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.208 4.208 3 C -0.044 4.044 4 N -0.236 5.236 5 C 0.067 3.933 6 C -0.541 4.541 7 H 0.083 0.917 8 C -0.144 4.144 9 N -0.539 5.539 10 Si 0.723 3.277 11 H -0.195 1.195 12 H -0.211 1.211 13 H -0.210 1.210 14 C -0.090 4.090 15 C 0.314 3.686 16 O -0.353 6.353 17 N -0.285 5.285 18 C -0.024 4.024 19 C -0.126 4.126 20 C -0.099 4.099 21 C -0.095 4.095 22 C -0.107 4.107 23 C -0.100 4.100 24 N 0.548 4.452 25 O -0.377 6.377 26 O -0.368 6.368 27 C -0.099 4.099 28 C 0.066 3.934 29 H 0.118 0.882 30 H 0.104 0.896 31 H 0.109 0.891 32 H 0.106 0.894 33 H 0.096 0.904 34 H 0.027 0.973 35 H 0.041 0.959 36 H 0.070 0.930 37 H 0.079 0.921 38 H 0.121 0.879 39 H 0.109 0.891 40 H 0.112 0.888 41 H 0.120 0.880 42 H 0.121 0.879 43 H 0.167 0.833 44 H 0.173 0.827 45 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges 15.933 -13.239 -10.497 23.223 hybrid contribution -0.984 0.164 0.207 1.019 sum 14.949 -13.075 -10.290 22.367 Atomic orbital electron populations 1.23727 0.95979 1.01298 1.00055 1.23549 0.96876 0.99583 1.00750 1.21425 0.94678 0.94232 0.94104 1.62210 1.15112 1.41238 1.05032 1.19837 0.92112 0.97817 0.83486 1.21139 1.24273 0.98043 1.10605 0.91698 1.24947 0.96768 0.96697 0.96034 1.69958 1.37839 1.30327 1.15797 0.86469 0.79290 0.83697 0.78196 1.19530 1.21110 1.21046 1.21960 0.95452 0.96572 0.95044 1.21375 0.79202 0.81173 0.86846 1.90676 1.68322 1.26494 1.49819 1.46306 1.29707 1.25877 1.26638 1.22264 0.98299 0.85312 0.96549 1.21255 0.98465 0.98576 0.94346 1.20500 0.95504 0.96206 0.97679 1.20313 0.97951 0.98670 0.92595 1.20858 0.97943 0.91946 0.99938 1.20676 1.02810 0.92516 0.93958 1.43560 0.99403 1.01319 1.00883 1.94507 1.30540 1.82737 1.29952 1.94610 1.35605 1.26520 1.80097 1.20678 0.98128 0.99889 0.91223 1.18056 0.91308 0.94334 0.89695 0.88243 0.89629 0.89107 0.89374 0.90391 0.97278 0.95858 0.93025 0.92053 0.87914 0.89061 0.88813 0.87983 0.87912 0.83289 0.82709 0.81160 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.97 14.32 29.02 0.42 -2.56 16 2 C -0.19 -3.31 7.46 -36.03 -0.27 -3.58 16 3 C 0.08 1.64 5.32 -4.97 -0.03 1.61 16 4 N -0.51 -10.62 4.39 -238.97 -1.05 -11.67 16 5 C 0.19 4.68 4.60 -4.98 -0.02 4.66 16 6 C -0.50 -13.73 8.51 -34.44 -0.29 -14.03 16 7 H 0.06 1.82 7.68 -52.49 -0.40 1.41 16 8 C 0.06 1.57 5.46 -17.82 -0.10 1.47 16 9 N -0.90 -25.81 13.29 55.43 0.74 -25.07 16 10 Si 0.90 21.46 29.54 -169.99 -5.02 16.44 16 11 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 12 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 13 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 14 C 0.04 0.65 4.41 -4.98 -0.02 0.63 16 15 C 0.52 7.98 7.50 -10.99 -0.08 7.90 16 16 O -0.48 -9.05 12.49 5.55 0.07 -8.98 16 17 N -0.56 -6.42 3.13 -112.90 -0.35 -6.77 16 18 C 0.10 0.65 6.67 -3.64 -0.02 0.63 16 19 C -0.09 -0.41 6.93 -27.24 -0.19 -0.60 16 20 C -0.10 -0.73 6.23 -104.27 -0.65 -1.38 16 21 C -0.08 -0.48 10.04 -39.61 -0.40 -0.88 16 22 C -0.09 -0.74 9.56 -39.57 -0.38 -1.11 16 23 C -0.02 -0.20 6.84 -80.08 -0.55 -0.74 16 24 N 0.03 0.40 4.45 33.90 0.15 0.55 16 25 O -0.16 -2.25 18.44 -29.46 -0.54 -2.80 16 26 O -0.15 -2.43 18.43 -29.46 -0.54 -2.97 16 27 C -0.08 -1.02 8.97 -39.21 -0.35 -1.38 16 28 C 0.16 1.86 6.62 -83.57 -0.55 1.31 16 29 H 0.10 1.78 7.84 -52.48 -0.41 1.37 16 30 H 0.09 1.29 8.06 -52.48 -0.42 0.87 16 31 H 0.09 1.43 6.75 -52.48 -0.35 1.08 16 32 H 0.09 1.91 7.01 -51.93 -0.36 1.55 16 33 H 0.08 1.52 5.84 -51.93 -0.30 1.21 16 34 H 0.01 0.24 6.77 -51.93 -0.35 -0.11 16 35 H 0.02 0.60 7.81 -51.93 -0.41 0.19 16 36 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 37 H 0.06 0.86 6.26 -51.93 -0.33 0.54 16 38 H 0.10 1.48 7.86 -51.93 -0.41 1.07 16 39 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 40 H 0.09 0.52 8.14 -51.93 -0.42 0.09 16 41 H 0.10 0.27 8.14 -51.92 -0.42 -0.15 16 42 H 0.10 0.28 8.14 -51.93 -0.42 -0.14 16 43 H 0.15 0.42 8.06 -52.49 -0.42 0.00 16 44 H 0.16 1.03 7.61 -52.49 -0.40 0.63 16 45 H 0.17 2.71 5.81 -52.49 -0.30 2.40 16 LS Contribution 379.14 15.07 5.71 5.71 Total: -1.00 -33.53 379.14 -10.03 -43.56 By element: Atomic # 1 Polarization: 5.75 SS G_CDS: -5.70 Total: 0.05 kcal Atomic # 6 Polarization: -4.56 SS G_CDS: -3.49 Total: -8.05 kcal Atomic # 7 Polarization: -42.45 SS G_CDS: -0.52 Total: -42.96 kcal Atomic # 8 Polarization: -13.74 SS G_CDS: -1.02 Total: -14.75 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -33.53 -10.03 -43.56 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292298144.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.592 kcal (2) G-P(sol) polarization free energy of solvation -33.530 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.061 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.031 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.561 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.031 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds